ISHalsp1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halorubrum sp. | Halorubrum sp. T3 |
DNA section
IS Length : 1584 bp
Ends
Left end : CTGAATGTAGGCGGTAAGCTCCCTTCCTCAAGGAGCAACGCAGGCCGAAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCATCGTCAATA II struct. : Yes
Right end : CTGCGGGAACTACCCCGGTTCCTGCAAAGCGTGTCGTGGAAGCAGGAAGCCCCTGTCTCAAGGAGCCGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCGGCGCTCGAA | TTAG | GTCCCGTGCTCC | tcac |
DNA sequence
CTGAATGTAGGCGGTAAGCTCCCTTCCTCAAGGAGCAACGCAGGCCGAAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCATCGTCAATA
CACTCTTCTATTCCCAACCCACAGGCCAACGCACCGACACAGTTATGTTGAAACAAAGTTTAAACACAGGTGATGGATAGACACGAAATCGAAGGCCACG
AAGTCATCGACGGCGAGGTGAAAGCCACTGGCAACGGCGCACACGTCCTCGTCCCAAAACGGTGGCGTGGCGCAGACGTAAAAATCGTCAGAACCTCTGA
GCCTGACGAGTAACCGATGAACTACAACTACAGGTATCGCCTCAAGCCGACAGAAGACCAGCGCGAGACGCTGGACTACCACCGCGATACCTGTAGACAA
CTCTATAACCACGCCCTGTACCGCTTCAACCAAATCCCCGAAGACGAGGGTACCGTCAAACAGCGTGTCCGCAAAATCCGTGACGAGCTTCCCGATCTCA
AAGACTGGTGGGATGCACTCACTGATGTCTACTCGAAGGTACTCCAGCCCACCGTCATGCGGGTCGCCAAGAACGTCAAAGCTCTCGGAAACCTCAAAGA
GCAGGGCTACAAAGTCGGTGAACTTCGGTGGAAGTCACCTCGGGAGTTTCGCAGTTTTACGTACAACCAGTCTGGCTTCGAACTCGACAAGAAGAGTGGG
CAGACTGTGTTGTCACTGTCGAAACTCGCAGCCATCCCCATCGAGTTCCACCGACCGCTGCCTGACGACGCTACGGTCAAGGAAGTCACGCTCAAAAAGG
AGAAAACTGGCGAGTGGTTCGCCATCTTCGGCATCGAGATGGACACAGAACCGCCAGCCAAGCCACCGCTGGAGGATATTGACACTGACGAGATGGTCGG
GATTGACGTGGGTATTCTGAAGTATGCCCACGATACAGACGGCACAGCGGTCGAATCACTCGACCTCTCTGAAGAACGTGACAGGCTCGAATGGGAGCAA
CGGAAACTCTCCCGGAAAGAGCGTGGGTCGAACAATTGGGAGAACCAACGTCGGCGTGTCGCTGAGTGCCATCTCGCCATCAAGCGCAAGCGGAATGATT
TCCTACACAAACTCTCGAACTACTACGCTCGGGAGTACGAACTGGTTGCCGTCGAAGACCTTGAGGTCAAAGGGATGCTCGAATCGCCGCGAAACAGCCG
CAACACGGCGTCAGCTGCGTGGACTACCTTCACCGACATGCTCGAAACGAAGTGTGAACGGGAAGGCACGCACTTCGTGGAAGTCGATCCAGATGGCACC
ACCAAAGAGTGCGCTCAGTGTGGCGTCGAAACCGACAAACCGCTGTGGGTTCGAGAACATTCCTGTCCTGCCTGTGGCTTCGAGGCAGACAGAGACGCAA
ACGCAGCGTGGAACATTCTCTCTCGCGGACTCACCGAACTAGGAGTGGGTCACTCCGAAGAAACGCCTGTGGAGACTGCGCTCCCTGCGGGAACTACCCC
GGTTCCTGCAAAGCGTGTCGTGGAAGCAGGAAGCCCCTGTCTCAAGGAGCCGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC
CACTCTTCTATTCCCAACCCACAGGCCAACGCACCGACACAGTTATGTTGAAACAAAGTTTAAACACAGGTGATGGATAGACACGAAATCGAAGGCCACG
AAGTCATCGACGGCGAGGTGAAAGCCACTGGCAACGGCGCACACGTCCTCGTCCCAAAACGGTGGCGTGGCGCAGACGTAAAAATCGTCAGAACCTCTGA
GCCTGACGAGTAACCGATGAACTACAACTACAGGTATCGCCTCAAGCCGACAGAAGACCAGCGCGAGACGCTGGACTACCACCGCGATACCTGTAGACAA
CTCTATAACCACGCCCTGTACCGCTTCAACCAAATCCCCGAAGACGAGGGTACCGTCAAACAGCGTGTCCGCAAAATCCGTGACGAGCTTCCCGATCTCA
AAGACTGGTGGGATGCACTCACTGATGTCTACTCGAAGGTACTCCAGCCCACCGTCATGCGGGTCGCCAAGAACGTCAAAGCTCTCGGAAACCTCAAAGA
GCAGGGCTACAAAGTCGGTGAACTTCGGTGGAAGTCACCTCGGGAGTTTCGCAGTTTTACGTACAACCAGTCTGGCTTCGAACTCGACAAGAAGAGTGGG
CAGACTGTGTTGTCACTGTCGAAACTCGCAGCCATCCCCATCGAGTTCCACCGACCGCTGCCTGACGACGCTACGGTCAAGGAAGTCACGCTCAAAAAGG
AGAAAACTGGCGAGTGGTTCGCCATCTTCGGCATCGAGATGGACACAGAACCGCCAGCCAAGCCACCGCTGGAGGATATTGACACTGACGAGATGGTCGG
GATTGACGTGGGTATTCTGAAGTATGCCCACGATACAGACGGCACAGCGGTCGAATCACTCGACCTCTCTGAAGAACGTGACAGGCTCGAATGGGAGCAA
CGGAAACTCTCCCGGAAAGAGCGTGGGTCGAACAATTGGGAGAACCAACGTCGGCGTGTCGCTGAGTGCCATCTCGCCATCAAGCGCAAGCGGAATGATT
TCCTACACAAACTCTCGAACTACTACGCTCGGGAGTACGAACTGGTTGCCGTCGAAGACCTTGAGGTCAAAGGGATGCTCGAATCGCCGCGAAACAGCCG
CAACACGGCGTCAGCTGCGTGGACTACCTTCACCGACATGCTCGAAACGAAGTGTGAACGGGAAGGCACGCACTTCGTGGAAGTCGATCCAGATGGCACC
ACCAAAGAGTGCGCTCAGTGTGGCGTCGAAACCGACAAACCGCTGTGGGTTCGAGAACATTCCTGTCCTGCCTGTGGCTTCGAGGCAGACAGAGACGCAA
ACGCAGCGTGGAACATTCTCTCTCGCGGACTCACCGAACTAGGAGTGGGTCACTCCGAAGAAACGCCTGTGGAGACTGCGCTCCCTGCGGGAACTACCCC
GGTTCCTGCAAAGCGTGTCGTGGAAGCAGGAAGCCCCTGTCTCAAGGAGCCGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
141 bp | 46 aa | 173 | 313 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MDRHEIEGHEVIDGEVKATGNGAHVLVPKRWRGADVKIVRTSEPDE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1263 bp | 420 aa | 317 | 1579 | + | No |
AG : TnpB
ORF sequence :
MNYNYRYRLKPTEDQRETLDYHRDTCRQLYNHALYRFNQIPEDEGTVKQRVRKIRDELPDLKDWWDALTDVYSKVLQPTVMRVAKNVKALGNLKEQGYKV
GELRWKSPREFRSFTYNQSGFELDKKSGQTVLSLSKLAAIPIEFHRPLPDDATVKEVTLKKEKTGEWFAIFGIEMDTEPPAKPPLEDIDTDEMVGIDVGI
LKYAHDTDGTAVESLDLSEERDRLEWEQRKLSRKERGSNNWENQRRRVAECHLAIKRKRNDFLHKLSNYYAREYELVAVEDLEVKGMLESPRNSRNTASA
AWTTFTDMLETKCEREGTHFVEVDPDGTTKECAQCGVETDKPLWVREHSCPACGFEADRDANAAWNILSRGLTELGVGHSEETPVETALPAGTTPVPAKR
VVEAGSPCLKEPPKAASRQG
GELRWKSPREFRSFTYNQSGFELDKKSGQTVLSLSKLAAIPIEFHRPLPDDATVKEVTLKKEKTGEWFAIFGIEMDTEPPAKPPLEDIDTDEMVGIDVGI
LKYAHDTDGTAVESLDLSEERDRLEWEQRKLSRKERGSNNWENQRRRVAECHLAIKRKRNDFLHKLSNYYAREYELVAVEDLEVKGMLESPRNSRNTASA
AWTTFTDMLETKCEREGTHFVEVDPDGTTKECAQCGVETDKPLWVREHSCPACGFEADRDANAAWNILSRGLTELGVGHSEETPVETALPAGTTPVPAKR
VVEAGSPCLKEPPKAASRQG
Blast result :
Comments
ISHalsp1 is 93% (TnpB) aa similar to ISHalh1. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission.