ISHalsp1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halorubrum sp.
Halorubrum sp. T3
DNA section
IS Length : 1584 bp

Ends


Left end : CTGAATGTAGGCGGTAAGCTCCCTTCCTCAAGGAGCAACGCAGGCCGAAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCATCGTCAATA II struct. : Yes
Right end : CTGCGGGAACTACCCCGGTTCCTGCAAAGCGTGTCGTGGAAGCAGGAAGCCCCTGTCTCAAGGAGCCGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CCGGCGCTCGAATTAGGTCCCGTGCTCCtcac

DNA sequence

CTGAATGTAGGCGGTAAGCTCCCTTCCTCAAGGAGCAACGCAGGCCGAAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCATCGTCAATA
CACTCTTCTATTCCCAACCCACAGGCCAACGCACCGACACAGTTATGTTGAAACAAAGTTTAAACACAGGTGATGGATAGACACGAAATCGAAGGCCACG
AAGTCATCGACGGCGAGGTGAAAGCCACTGGCAACGGCGCACACGTCCTCGTCCCAAAACGGTGGCGTGGCGCAGACGTAAAAATCGTCAGAACCTCTGA
GCCTGACGAGTAACCGATGAACTACAACTACAGGTATCGCCTCAAGCCGACAGAAGACCAGCGCGAGACGCTGGACTACCACCGCGATACCTGTAGACAA
CTCTATAACCACGCCCTGTACCGCTTCAACCAAATCCCCGAAGACGAGGGTACCGTCAAACAGCGTGTCCGCAAAATCCGTGACGAGCTTCCCGATCTCA
AAGACTGGTGGGATGCACTCACTGATGTCTACTCGAAGGTACTCCAGCCCACCGTCATGCGGGTCGCCAAGAACGTCAAAGCTCTCGGAAACCTCAAAGA
GCAGGGCTACAAAGTCGGTGAACTTCGGTGGAAGTCACCTCGGGAGTTTCGCAGTTTTACGTACAACCAGTCTGGCTTCGAACTCGACAAGAAGAGTGGG
CAGACTGTGTTGTCACTGTCGAAACTCGCAGCCATCCCCATCGAGTTCCACCGACCGCTGCCTGACGACGCTACGGTCAAGGAAGTCACGCTCAAAAAGG
AGAAAACTGGCGAGTGGTTCGCCATCTTCGGCATCGAGATGGACACAGAACCGCCAGCCAAGCCACCGCTGGAGGATATTGACACTGACGAGATGGTCGG
GATTGACGTGGGTATTCTGAAGTATGCCCACGATACAGACGGCACAGCGGTCGAATCACTCGACCTCTCTGAAGAACGTGACAGGCTCGAATGGGAGCAA
CGGAAACTCTCCCGGAAAGAGCGTGGGTCGAACAATTGGGAGAACCAACGTCGGCGTGTCGCTGAGTGCCATCTCGCCATCAAGCGCAAGCGGAATGATT
TCCTACACAAACTCTCGAACTACTACGCTCGGGAGTACGAACTGGTTGCCGTCGAAGACCTTGAGGTCAAAGGGATGCTCGAATCGCCGCGAAACAGCCG
CAACACGGCGTCAGCTGCGTGGACTACCTTCACCGACATGCTCGAAACGAAGTGTGAACGGGAAGGCACGCACTTCGTGGAAGTCGATCCAGATGGCACC
ACCAAAGAGTGCGCTCAGTGTGGCGTCGAAACCGACAAACCGCTGTGGGTTCGAGAACATTCCTGTCCTGCCTGTGGCTTCGAGGCAGACAGAGACGCAA
ACGCAGCGTGGAACATTCTCTCTCGCGGACTCACCGAACTAGGAGTGGGTCACTCCGAAGAAACGCCTGTGGAGACTGCGCTCCCTGCGGGAACTACCCC
GGTTCCTGCAAAGCGTGTCGTGGAAGCAGGAAGCCCCTGTCTCAAGGAGCCGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
141 bp46 aa173313+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MDRHEIEGHEVIDGEVKATGNGAHVLVPKRWRGADVKIVRTSEPDE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1263 bp420 aa3171579+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MNYNYRYRLKPTEDQRETLDYHRDTCRQLYNHALYRFNQIPEDEGTVKQRVRKIRDELPDLKDWWDALTDVYSKVLQPTVMRVAKNVKALGNLKEQGYKV
GELRWKSPREFRSFTYNQSGFELDKKSGQTVLSLSKLAAIPIEFHRPLPDDATVKEVTLKKEKTGEWFAIFGIEMDTEPPAKPPLEDIDTDEMVGIDVGI
LKYAHDTDGTAVESLDLSEERDRLEWEQRKLSRKERGSNNWENQRRRVAECHLAIKRKRNDFLHKLSNYYAREYELVAVEDLEVKGMLESPRNSRNTASA
AWTTFTDMLETKCEREGTHFVEVDPDGTTKECAQCGVETDKPLWVREHSCPACGFEADRDANAAWNILSRGLTELGVGHSEETPVETALPAGTTPVPAKR
VVEAGSPCLKEPPKAASRQG

 

Blast result :
Comments
ISHalsp1 is 93% (TnpB) aa similar to ISHalh1. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission.