ISHwa34
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ARPX01000147 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi J07HQW1 |
DNA section
IS Length : 1470 bp
Ends
Left end : GGAAGATTCAAGGCTAAAACGCCCTTCAGGGCGGGGATACAGCCGACAATTCCTCCACTAACCACGTTCGATGGCACTGCTGGATATTCCACACTCAGTC II struct. : Yes
Right end : CAAACCTCTGGGTCGTTCCACCCGAGGGAACAGGTGGGTTGCAAATCTTAATATCCCAACGCTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGTCAGACATGG | TTAT | TTGTGTGAACTA | tcaa |
DNA sequence
GGAAGATTCAAGGCTAAAACGCCCTTCAGGGCGGGGATACAGCCGACAATTCCTCCACTAACCACGTTCGATGGCACTGCTGGATATTCCACACTCAGTC
GTTACTCCTACTATGCAATTTCTCATAACTGGTTATGAACACAGTCTGATGCTGGAGACCACTCGTACCTATCGGGCGAAAATCGCCAACCACTCTCAGG
TGAGTGACGACCTCGACCAGTGTGGGTTCTCTGCATCAAAACTGTGGAACGTCGCCCGATACTACACACAAGGTTGGTGGGATGAAGACGGGGAAATACT
CGACGACGGCGAACTCAAATCCGAACTCAAGGAACACGAACGATACAGTGACCTACATTCTCAGTCAACTCAGCGAGTTCTCGAAGAACTTGCTGAGTCG
TTCACCAGTTGGTACAAAGCACGCCAACGCGGAGATGAGGACGCCAACCCACCCGGCTATCGCAAACACGGCGACGAACACCCGCGCTCCACCGTGACGT
GGAAGCAGAAGGGCATCAAGCACGATTCCAAACACAACAAACTCCGACTGAGCAAGGGCTTCAACCTGAAGAACCACCGCTCAGACTTTATCTTGTGTGA
GTACGAGACGCGACCGGACGTGACCGTGGAGAACATCCACCAAGTGCGAGCTGTGTGGAACGGCGACAACTGGGAACTTCACCTCGTCTGCAAGGTCGAG
ATACCTGTTGAGGACGTACCTGGCGAGAAGACGGCGGGTATCGACCTTGGCATCAAGAACTACCTCGCTATCGCCTACGACGACGGTGAGCCAGAGTTGT
ATCCGGGGAATATGCTGAAACAGGACAAGTACTGCTTCACCCGCGACGAGTACGATACCGAAGGCGAGAATGGCCCGTCACGCCGTGCCCTTCGTGCCCG
TCAGAAACTCTCACGCCGGAAAGACCACTTTCTGCACTCACTCGCCAAGCACGTCGTAGAGCGGTGTATCGACCACGAGGTCGGACGCATCGCCATCGGT
GAGTTGAGCAAGATTCGTGAGGACGAGAACGGTGAGTCTCGGAACTGGGGTCGAAGTGGAACCAAGAAGCTCCACGGTTGGGAGTTCGACCACTTCACCA
CGGTGCTCGAATACAAGGCTGAGGAACACGGTATCCTCGTTGACCGAAAGAGCGAGCGCGACACGTCGAAGACGTGTTCGTGTTGTGGTCGGAAGTGTGA
CTCAAACCGTGTGGAGCGTGGTTTGTACGTGTGTAAGTCGTGCGGTACAACGATGAACGCGGACGTAAATGGTGCGGTGAATATTCGCAGAAAGATAACT
CAGAATCCTCCCACAGGGGATATGAGTAACGGTCGTTTGGCACGGCCAGTAGCCTACCTGTTCAACCAAACCTCTGGGTCGTTCCACCCGAGGGAACAGG
TGGGTTGCAAATCTTAATATCCCAACGCTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
GTTACTCCTACTATGCAATTTCTCATAACTGGTTATGAACACAGTCTGATGCTGGAGACCACTCGTACCTATCGGGCGAAAATCGCCAACCACTCTCAGG
TGAGTGACGACCTCGACCAGTGTGGGTTCTCTGCATCAAAACTGTGGAACGTCGCCCGATACTACACACAAGGTTGGTGGGATGAAGACGGGGAAATACT
CGACGACGGCGAACTCAAATCCGAACTCAAGGAACACGAACGATACAGTGACCTACATTCTCAGTCAACTCAGCGAGTTCTCGAAGAACTTGCTGAGTCG
TTCACCAGTTGGTACAAAGCACGCCAACGCGGAGATGAGGACGCCAACCCACCCGGCTATCGCAAACACGGCGACGAACACCCGCGCTCCACCGTGACGT
GGAAGCAGAAGGGCATCAAGCACGATTCCAAACACAACAAACTCCGACTGAGCAAGGGCTTCAACCTGAAGAACCACCGCTCAGACTTTATCTTGTGTGA
GTACGAGACGCGACCGGACGTGACCGTGGAGAACATCCACCAAGTGCGAGCTGTGTGGAACGGCGACAACTGGGAACTTCACCTCGTCTGCAAGGTCGAG
ATACCTGTTGAGGACGTACCTGGCGAGAAGACGGCGGGTATCGACCTTGGCATCAAGAACTACCTCGCTATCGCCTACGACGACGGTGAGCCAGAGTTGT
ATCCGGGGAATATGCTGAAACAGGACAAGTACTGCTTCACCCGCGACGAGTACGATACCGAAGGCGAGAATGGCCCGTCACGCCGTGCCCTTCGTGCCCG
TCAGAAACTCTCACGCCGGAAAGACCACTTTCTGCACTCACTCGCCAAGCACGTCGTAGAGCGGTGTATCGACCACGAGGTCGGACGCATCGCCATCGGT
GAGTTGAGCAAGATTCGTGAGGACGAGAACGGTGAGTCTCGGAACTGGGGTCGAAGTGGAACCAAGAAGCTCCACGGTTGGGAGTTCGACCACTTCACCA
CGGTGCTCGAATACAAGGCTGAGGAACACGGTATCCTCGTTGACCGAAAGAGCGAGCGCGACACGTCGAAGACGTGTTCGTGTTGTGGTCGGAAGTGTGA
CTCAAACCGTGTGGAGCGTGGTTTGTACGTGTGTAAGTCGTGCGGTACAACGATGAACGCGGACGTAAATGGTGCGGTGAATATTCGCAGAAAGATAACT
CAGAATCCTCCCACAGGGGATATGAGTAACGGTCGTTTGGCACGGCCAGTAGCCTACCTGTTCAACCAAACCTCTGGGTCGTTCCACCCGAGGGAACAGG
TGGGTTGCAAATCTTAATATCCCAACGCTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1269 bp | 422 aa | 149 | 1417 | + | No |
AG : TnpB
ORF sequence :
MLETTRTYRAKIANHSQVSDDLDQCGFSASKLWNVARYYTQGWWDEDGEILDDGELKSELKEHERYSDLHSQSTQRVLEELAESFTSWYKARQRGDEDAN
PPGYRKHGDEHPRSTVTWKQKGIKHDSKHNKLRLSKGFNLKNHRSDFILCEYETRPDVTVENIHQVRAVWNGDNWELHLVCKVEIPVEDVPGEKTAGIDL
GIKNYLAIAYDDGEPELYPGNMLKQDKYCFTRDEYDTEGENGPSRRALRARQKLSRRKDHFLHSLAKHVVERCIDHEVGRIAIGELSKIREDENGESRNW
GRSGTKKLHGWEFDHFTTVLEYKAEEHGILVDRKSERDTSKTCSCCGRKCDSNRVERGLYVCKSCGTTMNADVNGAVNIRRKITQNPPTGDMSNGRLARP
VAYLFNQTSGSFHPREQVGCKS
PPGYRKHGDEHPRSTVTWKQKGIKHDSKHNKLRLSKGFNLKNHRSDFILCEYETRPDVTVENIHQVRAVWNGDNWELHLVCKVEIPVEDVPGEKTAGIDL
GIKNYLAIAYDDGEPELYPGNMLKQDKYCFTRDEYDTEGENGPSRRALRARQKLSRRKDHFLHSLAKHVVERCIDHEVGRIAIGELSKIREDENGESRNW
GRSGTKKLHGWEFDHFTTVLEYKAEEHGILVDRKSERDTSKTCSCCGRKCDSNRVERGLYVCKSCGTTMNADVNGAVNIRRKITQNPPTGDMSNGRLARP
VAYLFNQTSGSFHPREQVGCKS
Blast result :
Comments
ISHwa34 is 90% aa similar to ISHtu3.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Podell,S., Ugalde,J.A., Narasingarao,P., Banfield,J.F., Heidelberg,K.B. and Allen,E.E. (2013) PLoS ONE 8 (4), E61692.
2] Podell,S., Ugalde,J.A., Narasingarao,P., Banfield,J.F., Heidelberg,K.B. and Allen,E.E. (2013) PLoS ONE 8 (4), E61692.