ISHwa34

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ARPX01000147 ND Haloquadratum walsbyi
Haloquadratum walsbyi J07HQW1
DNA section
IS Length : 1470 bp

Ends


Left end : GGAAGATTCAAGGCTAAAACGCCCTTCAGGGCGGGGATACAGCCGACAATTCCTCCACTAACCACGTTCGATGGCACTGCTGGATATTCCACACTCAGTC II struct. : Yes
Right end : CAAACCTCTGGGTCGTTCCACCCGAGGGAACAGGTGGGTTGCAAATCTTAATATCCCAACGCTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGTCAGACATGGTTATTTGTGTGAACTAtcaa

DNA sequence

GGAAGATTCAAGGCTAAAACGCCCTTCAGGGCGGGGATACAGCCGACAATTCCTCCACTAACCACGTTCGATGGCACTGCTGGATATTCCACACTCAGTC
GTTACTCCTACTATGCAATTTCTCATAACTGGTTATGAACACAGTCTGATGCTGGAGACCACTCGTACCTATCGGGCGAAAATCGCCAACCACTCTCAGG
TGAGTGACGACCTCGACCAGTGTGGGTTCTCTGCATCAAAACTGTGGAACGTCGCCCGATACTACACACAAGGTTGGTGGGATGAAGACGGGGAAATACT
CGACGACGGCGAACTCAAATCCGAACTCAAGGAACACGAACGATACAGTGACCTACATTCTCAGTCAACTCAGCGAGTTCTCGAAGAACTTGCTGAGTCG
TTCACCAGTTGGTACAAAGCACGCCAACGCGGAGATGAGGACGCCAACCCACCCGGCTATCGCAAACACGGCGACGAACACCCGCGCTCCACCGTGACGT
GGAAGCAGAAGGGCATCAAGCACGATTCCAAACACAACAAACTCCGACTGAGCAAGGGCTTCAACCTGAAGAACCACCGCTCAGACTTTATCTTGTGTGA
GTACGAGACGCGACCGGACGTGACCGTGGAGAACATCCACCAAGTGCGAGCTGTGTGGAACGGCGACAACTGGGAACTTCACCTCGTCTGCAAGGTCGAG
ATACCTGTTGAGGACGTACCTGGCGAGAAGACGGCGGGTATCGACCTTGGCATCAAGAACTACCTCGCTATCGCCTACGACGACGGTGAGCCAGAGTTGT
ATCCGGGGAATATGCTGAAACAGGACAAGTACTGCTTCACCCGCGACGAGTACGATACCGAAGGCGAGAATGGCCCGTCACGCCGTGCCCTTCGTGCCCG
TCAGAAACTCTCACGCCGGAAAGACCACTTTCTGCACTCACTCGCCAAGCACGTCGTAGAGCGGTGTATCGACCACGAGGTCGGACGCATCGCCATCGGT
GAGTTGAGCAAGATTCGTGAGGACGAGAACGGTGAGTCTCGGAACTGGGGTCGAAGTGGAACCAAGAAGCTCCACGGTTGGGAGTTCGACCACTTCACCA
CGGTGCTCGAATACAAGGCTGAGGAACACGGTATCCTCGTTGACCGAAAGAGCGAGCGCGACACGTCGAAGACGTGTTCGTGTTGTGGTCGGAAGTGTGA
CTCAAACCGTGTGGAGCGTGGTTTGTACGTGTGTAAGTCGTGCGGTACAACGATGAACGCGGACGTAAATGGTGCGGTGAATATTCGCAGAAAGATAACT
CAGAATCCTCCCACAGGGGATATGAGTAACGGTCGTTTGGCACGGCCAGTAGCCTACCTGTTCAACCAAACCTCTGGGTCGTTCCACCCGAGGGAACAGG
TGGGTTGCAAATCTTAATATCCCAACGCTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1269 bp422 aa1491417+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLETTRTYRAKIANHSQVSDDLDQCGFSASKLWNVARYYTQGWWDEDGEILDDGELKSELKEHERYSDLHSQSTQRVLEELAESFTSWYKARQRGDEDAN
PPGYRKHGDEHPRSTVTWKQKGIKHDSKHNKLRLSKGFNLKNHRSDFILCEYETRPDVTVENIHQVRAVWNGDNWELHLVCKVEIPVEDVPGEKTAGIDL
GIKNYLAIAYDDGEPELYPGNMLKQDKYCFTRDEYDTEGENGPSRRALRARQKLSRRKDHFLHSLAKHVVERCIDHEVGRIAIGELSKIREDENGESRNW
GRSGTKKLHGWEFDHFTTVLEYKAEEHGILVDRKSERDTSKTCSCCGRKCDSNRVERGLYVCKSCGTTMNADVNGAVNIRRKITQNPPTGDMSNGRLARP
VAYLFNQTSGSFHPREQVGCKS

 

Blast result :
Comments
ISHwa34 is 90% aa similar to ISHtu3.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Podell,S., Ugalde,J.A., Narasingarao,P., Banfield,J.F., Heidelberg,K.B. and Allen,E.E. (2013) PLoS ONE 8 (4), E61692.