ISHti13
- Family IS4
- Group ISH8
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF571520 | ND | Halorhabdus tiamatea | Halorhabdus tiamatea SARL4B Halorhabdus tiamatea SARL4B plasmid pHTIA |
DNA section
IS Length : 1403 bp
Ends
IR Length : 19
IRL : CATGCGTCTTTAGCTAAGCGAAGAACCGCCTGACAGCAGCGGCTTATCGA
IRR : CATGCGTCTTTAGCTAAGCCTCAGTCCTCGGTTGTGTAGCGGTAGCGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACGACGTTA | CCGTGAGAGT | GGGCGGACTG | 10 |
CCTCGAGGAA | CTTGAGAAGG | GTGTGAGCAG | 10 |
TCACGTAATC | GCGAACTATT | CAACCGGATC | 10 |
TATCTCGTTG | TCTGCTTCGG | GTTCTTGCAC | 10 |
DNA sequence
CATGCGTCTTTAGCTAAGCGAAGAACCGCCTGACAGCAGCGGCTTATCGAGGTACCTTTGCAGGAGGATTGAGGAGGTTGCGAGTGTGCACAACGCTCCC
TCCTCAGATCAGATTGAACGTCGGCTCACTACCCTCTTTCCCTCTGCTGCGCTGGAAGATCACGCCGAGGCTGTCGGCGTGATCGAACGAGACGGAAAGC
TCCAGATCCCGCCGCTCGTGTGGTCGTTTGCGTTCGGCTTCGCCACTGGCGAGAGCCGAACGCTCGCAGCCTTCCGTCGGAGCTACAACTCCACAGCTGA
CAAACCGCTGTCTCCCGGTGGGTACTACCAGCGATTGACGCCGACGTTGGCAGAGTATCTCCACGACCTCGTCGAGTACGGCCTCGACGAGGTCGCTGTC
CCCCACACTGTGACCGACCAGTTCGACCGATTCAGAGACGTGATGATTGCTGATGGGACGGTGTTGCGCCTGCACCAGTTCCTCTCCGATGAGTTCGAAG
GACGCAACGAGGAGCAGGCTGGAGCACGGCTCCACCTGCTCCACAACCCGAGCGATCAGATGCTGGAACGATTCAGCATCACCGACGAGAAAGCCCACGA
CAGCACGGAGTTCAACACCGGCTCGTGGCTCGAACAGCGGCTGGTACTGTTCGATCAGGCGTATTTCAAATACCGGCGGTTCGCGTTGATCGACGAGAAC
GATGGCTACTTTGTGAGTCGGCTGAAACCCGACGCAAATCCGGTTGTAACGGACGAGTTACGGGAATGGCGTGGCGACGCCATTCCCTTGGAAGGAGAGA
AGATCCACGATGTCGTTGAGGATCTCTACCGGAAATACATCGATGTGGAAGTCGAGGCTGAGTTCAAGCGCGGGCCGTACAACGGAACACGGTCGCTGGA
CTCCAAGCGGTTCCGCGTCGTCGGCGTCCGCGACGAGGACGCCGACGACTACCATCTGTACATCACGAATCTGCCGCGTGAGGAGTTTCTCCCGGAAGAT
TTAGCGACGATCTATCGGTGTCGGTGGGCTGTCGAGCGGTTGTTTCGGGAGCTCAAGACGCAATACGGACTGGATGAGTTCGACACAACGAAAGAGCACG
TTGTGGAGATTCTGGTGTATGCGGCGTTGTTGTCGCTGTTAGTGAGTCGTGAGTTGCTGTCGCTGGTGACAGAGTGCGCCGATGATGAAGCTGTCTTCCC
TCCAGGGCGTTGGGCGGCGACCTTCCGGTCGCACGCCCAACTCATTCTCAACGATTTGGGTGAATTCCTCGGCTACTCGCCACCTCCGCTGTTGGAACGG
CTGATCGAAGATGCACAGAAAATCCATAGCCAACGACCGATACTACAGGAGACGCTCGCTACCGCTACACAACCGAGGACTGAGGCTTAGCTAAAGACGC
ATG
TCCTCAGATCAGATTGAACGTCGGCTCACTACCCTCTTTCCCTCTGCTGCGCTGGAAGATCACGCCGAGGCTGTCGGCGTGATCGAACGAGACGGAAAGC
TCCAGATCCCGCCGCTCGTGTGGTCGTTTGCGTTCGGCTTCGCCACTGGCGAGAGCCGAACGCTCGCAGCCTTCCGTCGGAGCTACAACTCCACAGCTGA
CAAACCGCTGTCTCCCGGTGGGTACTACCAGCGATTGACGCCGACGTTGGCAGAGTATCTCCACGACCTCGTCGAGTACGGCCTCGACGAGGTCGCTGTC
CCCCACACTGTGACCGACCAGTTCGACCGATTCAGAGACGTGATGATTGCTGATGGGACGGTGTTGCGCCTGCACCAGTTCCTCTCCGATGAGTTCGAAG
GACGCAACGAGGAGCAGGCTGGAGCACGGCTCCACCTGCTCCACAACCCGAGCGATCAGATGCTGGAACGATTCAGCATCACCGACGAGAAAGCCCACGA
CAGCACGGAGTTCAACACCGGCTCGTGGCTCGAACAGCGGCTGGTACTGTTCGATCAGGCGTATTTCAAATACCGGCGGTTCGCGTTGATCGACGAGAAC
GATGGCTACTTTGTGAGTCGGCTGAAACCCGACGCAAATCCGGTTGTAACGGACGAGTTACGGGAATGGCGTGGCGACGCCATTCCCTTGGAAGGAGAGA
AGATCCACGATGTCGTTGAGGATCTCTACCGGAAATACATCGATGTGGAAGTCGAGGCTGAGTTCAAGCGCGGGCCGTACAACGGAACACGGTCGCTGGA
CTCCAAGCGGTTCCGCGTCGTCGGCGTCCGCGACGAGGACGCCGACGACTACCATCTGTACATCACGAATCTGCCGCGTGAGGAGTTTCTCCCGGAAGAT
TTAGCGACGATCTATCGGTGTCGGTGGGCTGTCGAGCGGTTGTTTCGGGAGCTCAAGACGCAATACGGACTGGATGAGTTCGACACAACGAAAGAGCACG
TTGTGGAGATTCTGGTGTATGCGGCGTTGTTGTCGCTGTTAGTGAGTCGTGAGTTGCTGTCGCTGGTGACAGAGTGCGCCGATGATGAAGCTGTCTTCCC
TCCAGGGCGTTGGGCGGCGACCTTCCGGTCGCACGCCCAACTCATTCTCAACGATTTGGGTGAATTCCTCGGCTACTCGCCACCTCCGCTGTTGGAACGG
CTGATCGAAGATGCACAGAAAATCCATAGCCAACGACCGATACTACAGGAGACGCTCGCTACCGCTACACAACCGAGGACTGAGGCTTAGCTAAAGACGC
ATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 86 | 1390 | + | No |
Chemistry : DDE
ORF sequence :
MHNAPSSDQIERRLTTLFPSAALEDHAEAVGVIERDGKLQIPPLVWSFAFGFATGESRTLAAFRRSYNSTADKPLSPGGYYQRLTPTLAEYLHDLVEYGL
DEVAVPHTVTDQFDRFRDVMIADGTVLRLHQFLSDEFEGRNEEQAGARLHLLHNPSDQMLERFSITDEKAHDSTEFNTGSWLEQRLVLFDQAYFKYRRFA
LIDENDGYFVSRLKPDANPVVTDELREWRGDAIPLEGEKIHDVVEDLYRKYIDVEVEAEFKRGPYNGTRSLDSKRFRVVGVRDEDADDYHLYITNLPREE
FLPEDLATIYRCRWAVERLFRELKTQYGLDEFDTTKEHVVEILVYAALLSLLVSRELLSLVTECADDEAVFPPGRWAATFRSHAQLILNDLGEFLGYSPP
PLLERLIEDAQKIHSQRPILQETLATATQPRTEA
DEVAVPHTVTDQFDRFRDVMIADGTVLRLHQFLSDEFEGRNEEQAGARLHLLHNPSDQMLERFSITDEKAHDSTEFNTGSWLEQRLVLFDQAYFKYRRFA
LIDENDGYFVSRLKPDANPVVTDELREWRGDAIPLEGEKIHDVVEDLYRKYIDVEVEAEFKRGPYNGTRSLDSKRFRVVGVRDEDADDYHLYITNLPREE
FLPEDLATIYRCRWAVERLFRELKTQYGLDEFDTTKEHVVEILVYAALLSLLVSRELLSLVTECADDEAVFPPGRWAATFRSHAQLILNDLGEFLGYSPP
PLLERLIEDAQKIHSQRPILQETLATATQPRTEA
Blast result :
Comments
ISHti13 is 89% aa similar to ISH8C.
IS_pep_1 is HTIA_0111, starting in UniProt with the GTG for Val-32 encoded on the chromosome and on plasmid pHTIA.
IS_pep_1 is HTIA_0111, starting in UniProt with the GTG for Val-32 encoded on the chromosome and on plasmid pHTIA.
References
1] Pfeiffer F. (2015) Direct submission
2] Werner J., Ferrer M., Michel G., Mann A.J., Huang S., Juarez S., Ciordia S., Albar J.P., Alcaide M., La Cono V., Yakimov M.M., Antunes A., Taborda M., da Costa M.S., Hai T., Glockner F.O., Golyshina O.V., Golyshin P.N., and Teeling H. (2014) Environ Microbiol. Aug;16(8):2525-37
2] Werner J., Ferrer M., Michel G., Mann A.J., Huang S., Juarez S., Ciordia S., Albar J.P., Alcaide M., La Cono V., Yakimov M.M., Antunes A., Taborda M., da Costa M.S., Hai T., Glockner F.O., Golyshina O.V., Golyshin P.N., and Teeling H. (2014) Environ Microbiol. Aug;16(8):2525-37