ISHti13

  • Family IS4
  • Group ISH8
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF571520 ND Halorhabdus tiamatea
Halorhabdus tiamatea SARL4B
Halorhabdus tiamatea SARL4B plasmid pHTIA
DNA section
IS Length : 1403 bp

Ends


IR Length : 19

IRL : CATGCGTCTTTAGCTAAGCGAAGAACCGCCTGACAGCAGCGGCTTATCGA
IRR : CATGCGTCTTTAGCTAAGCCTCAGTCCTCGGTTGTGTAGCGGTAGCGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
GACGACGTTACCGTGAGAGTGGGCGGACTG10
CCTCGAGGAACTTGAGAAGGGTGTGAGCAG10
TCACGTAATCGCGAACTATTCAACCGGATC10
TATCTCGTTGTCTGCTTCGGGTTCTTGCAC10

DNA sequence

CATGCGTCTTTAGCTAAGCGAAGAACCGCCTGACAGCAGCGGCTTATCGAGGTACCTTTGCAGGAGGATTGAGGAGGTTGCGAGTGTGCACAACGCTCCC
TCCTCAGATCAGATTGAACGTCGGCTCACTACCCTCTTTCCCTCTGCTGCGCTGGAAGATCACGCCGAGGCTGTCGGCGTGATCGAACGAGACGGAAAGC
TCCAGATCCCGCCGCTCGTGTGGTCGTTTGCGTTCGGCTTCGCCACTGGCGAGAGCCGAACGCTCGCAGCCTTCCGTCGGAGCTACAACTCCACAGCTGA
CAAACCGCTGTCTCCCGGTGGGTACTACCAGCGATTGACGCCGACGTTGGCAGAGTATCTCCACGACCTCGTCGAGTACGGCCTCGACGAGGTCGCTGTC
CCCCACACTGTGACCGACCAGTTCGACCGATTCAGAGACGTGATGATTGCTGATGGGACGGTGTTGCGCCTGCACCAGTTCCTCTCCGATGAGTTCGAAG
GACGCAACGAGGAGCAGGCTGGAGCACGGCTCCACCTGCTCCACAACCCGAGCGATCAGATGCTGGAACGATTCAGCATCACCGACGAGAAAGCCCACGA
CAGCACGGAGTTCAACACCGGCTCGTGGCTCGAACAGCGGCTGGTACTGTTCGATCAGGCGTATTTCAAATACCGGCGGTTCGCGTTGATCGACGAGAAC
GATGGCTACTTTGTGAGTCGGCTGAAACCCGACGCAAATCCGGTTGTAACGGACGAGTTACGGGAATGGCGTGGCGACGCCATTCCCTTGGAAGGAGAGA
AGATCCACGATGTCGTTGAGGATCTCTACCGGAAATACATCGATGTGGAAGTCGAGGCTGAGTTCAAGCGCGGGCCGTACAACGGAACACGGTCGCTGGA
CTCCAAGCGGTTCCGCGTCGTCGGCGTCCGCGACGAGGACGCCGACGACTACCATCTGTACATCACGAATCTGCCGCGTGAGGAGTTTCTCCCGGAAGAT
TTAGCGACGATCTATCGGTGTCGGTGGGCTGTCGAGCGGTTGTTTCGGGAGCTCAAGACGCAATACGGACTGGATGAGTTCGACACAACGAAAGAGCACG
TTGTGGAGATTCTGGTGTATGCGGCGTTGTTGTCGCTGTTAGTGAGTCGTGAGTTGCTGTCGCTGGTGACAGAGTGCGCCGATGATGAAGCTGTCTTCCC
TCCAGGGCGTTGGGCGGCGACCTTCCGGTCGCACGCCCAACTCATTCTCAACGATTTGGGTGAATTCCTCGGCTACTCGCCACCTCCGCTGTTGGAACGG
CTGATCGAAGATGCACAGAAAATCCATAGCCAACGACCGATACTACAGGAGACGCTCGCTACCGCTACACAACCGAGGACTGAGGCTTAGCTAAAGACGC
ATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1305 bp434 aa861390+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHNAPSSDQIERRLTTLFPSAALEDHAEAVGVIERDGKLQIPPLVWSFAFGFATGESRTLAAFRRSYNSTADKPLSPGGYYQRLTPTLAEYLHDLVEYGL
DEVAVPHTVTDQFDRFRDVMIADGTVLRLHQFLSDEFEGRNEEQAGARLHLLHNPSDQMLERFSITDEKAHDSTEFNTGSWLEQRLVLFDQAYFKYRRFA
LIDENDGYFVSRLKPDANPVVTDELREWRGDAIPLEGEKIHDVVEDLYRKYIDVEVEAEFKRGPYNGTRSLDSKRFRVVGVRDEDADDYHLYITNLPREE
FLPEDLATIYRCRWAVERLFRELKTQYGLDEFDTTKEHVVEILVYAALLSLLVSRELLSLVTECADDEAVFPPGRWAATFRSHAQLILNDLGEFLGYSPP
PLLERLIEDAQKIHSQRPILQETLATATQPRTEA

 

Blast result :
Comments
ISHti13 is 89% aa similar to ISH8C.
IS_pep_1 is HTIA_0111, starting in UniProt with the GTG for Val-32 encoded on the chromosome and on plasmid pHTIA.
References
1] Pfeiffer F. (2015) Direct submission
2] Werner J., Ferrer M., Michel G., Mann A.J., Huang S., Juarez S., Ciordia S., Albar J.P., Alcaide M., La Cono V., Yakimov M.M., Antunes A., Taborda M., da Costa M.S., Hai T., Glockner F.O., Golyshina O.V., Golyshin P.N., and Teeling H. (2014) Environ Microbiol. Aug;16(8):2525-37