ISHko1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOJH01000103 ND Halorubrum kocurii
Halorubrum kocurii JCM 14978
DNA section
IS Length : 1389 bp

Ends


Left end : CAGAAGTGAGGCGAGAATGCCCCTTCCTCAAGGAGTGACCAACGGGAGCGAGTAGGGAGGGGATGAATCGCCGCACACCAGTACAAACCATTAAGTTAAC II struct. : Yes
Right end : TACGGACACCACTCGCGTGTCTGCAAAGCGCGTCGTCGAAACAGGAAGCCCCACCCTCAACGAAGCCACGCCTGTGGCTGAGTAGGGTGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CTTACTCGCGTATTACGGAAGTACAAGGtcac

DNA sequence

CAGAAGTGAGGCGAGAATGCCCCTTCCTCAAGGAGTGACCAACGGGAGCGAGTAGGGAGGGGATGAATCGCCGCACACCAGTACAAACCATTAAGTTAAC
ATATCGATAATCAATAGACAGCGATGGAGTACAGTCACCGCTACTATGCCTACCCGACACAAGAGGTAGCGGCTGAACTAGACTACCATATCGACATTCA
TCGCCAAGCGTACAACTACACCCTGTACGAGTACGACAACGTGGACGCCGACAACATCGGCTCTGCGTACAAGCACCACTCCCGACTCCCCGACTGGAAA
GACGAGTTCCCTGTTTTCTCGGAAGTCAACTCGAAGGCTCTGCAACGAACCGTCACTCGGTTCTACCACAACCTCGACGGACTCTCCGAGCAGAAGCAAA
ACGGACGCAAGGTCGGGAAGCTCACGTGGAAGTCTCCGAGAGAGTTCCAGAGTATAACGTATTCGCAGTCTGGCTTCGAACTCAAAAACACGAGTGGTCG
ACGCGCGACGCTCTGGCTCTCCAAAATCGGAGATATCAAACTCCGCTACCACCGCGAGATCCCCGACGAAGCAGCTATCAAAGAAGTCACAGTCAAAAAG
GAGACGACCGGCGACTGGTTCGTCTCGTTCGGCCTCGAAACTGACGAGGCTGACCTGCCCGAGAAACCCGACGTGGACTCGCTCAATACAGACAATAGCG
TCGGCGTTGACCTCGGCATCCTCAACTACATCCACACTTCGGACGGGACGACTGTAGACTGGATCGACCTCGAAGACGAATACGAGCGACTGTGCCGTGA
ACAACGTAAACTCTCACGGAAAGAACACGGGTCAAACAACTACGAAAACCAGCGCCAAGCGGTTGCGAAGGTCAAACGCCATATCCGTCAGAAGGTGCTG
GACTACCAGCACAAGCTCACGACATGGCTCGTCACAGAGTACGATGCGGTGTTCGTGGAAGACCTGAACGTCGCTCAGATGCTTCAAGGCGATGGGAACG
CGCGGAACAAGCAGGCTGCGGCGTGGCGACAGTTCATCACCTTGCTCGAATACAAGGGTGAGCTGTACGGGACACACGTCGTGCAAGTCGAAGCGAGAGG
AACGACGAAAGAGTGTGCGACGTGTGGTGTGGAGACAGCGAAACCCATCTGGATCAGGGAGCACTCGTGTCCGAGTTGTGGGTTCGAGTGTGACCGTGAC
GCGAACGCGGCGATGAACGTCTTGCAGAGAGGCTTTGCTGAACTAGGGCTGGGATGGCCCGAATCAACGCCTGTGGAGACTGCGCTCCCTACGGACACCA
CTCGCGTGTCTGCAAAGCGCGTCGTCGAAACAGGAAGCCCCACCCTCAACGAAGCCACGCCTGTGGCTGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1251 bp416 aa1241374+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEYSHRYYAYPTQEVAAELDYHIDIHRQAYNYTLYEYDNVDADNIGSAYKHHSRLPDWKDEFPVFSEVNSKALQRTVTRFYHNLDGLSEQKQNGRKVGKL
TWKSPREFQSITYSQSGFELKNTSGRRATLWLSKIGDIKLRYHREIPDEAAIKEVTVKKETTGDWFVSFGLETDEADLPEKPDVDSLNTDNSVGVDLGIL
NYIHTSDGTTVDWIDLEDEYERLCREQRKLSRKEHGSNNYENQRQAVAKVKRHIRQKVLDYQHKLTTWLVTEYDAVFVEDLNVAQMLQGDGNARNKQAAA
WRQFITLLEYKGELYGTHVVQVEARGTTKECATCGVETAKPIWIREHSCPSCGFECDRDANAAMNVLQRGFAELGLGWPESTPVETALPTDTTRVSAKRV
VETGSPTLNEATPVAE

 

Blast result :
Comments
ISHko1 is 92% aa similar to ISHarch8.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.