ISHko1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOJH01000103 | ND | Halorubrum kocurii | Halorubrum kocurii JCM 14978 |
DNA section
IS Length : 1389 bp
Ends
Left end : CAGAAGTGAGGCGAGAATGCCCCTTCCTCAAGGAGTGACCAACGGGAGCGAGTAGGGAGGGGATGAATCGCCGCACACCAGTACAAACCATTAAGTTAAC II struct. : Yes
Right end : TACGGACACCACTCGCGTGTCTGCAAAGCGCGTCGTCGAAACAGGAAGCCCCACCCTCAACGAAGCCACGCCTGTGGCTGAGTAGGGTGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTTACTCGCGTA | TTAC | GGAAGTACAAGG | tcac |
DNA sequence
CAGAAGTGAGGCGAGAATGCCCCTTCCTCAAGGAGTGACCAACGGGAGCGAGTAGGGAGGGGATGAATCGCCGCACACCAGTACAAACCATTAAGTTAAC
ATATCGATAATCAATAGACAGCGATGGAGTACAGTCACCGCTACTATGCCTACCCGACACAAGAGGTAGCGGCTGAACTAGACTACCATATCGACATTCA
TCGCCAAGCGTACAACTACACCCTGTACGAGTACGACAACGTGGACGCCGACAACATCGGCTCTGCGTACAAGCACCACTCCCGACTCCCCGACTGGAAA
GACGAGTTCCCTGTTTTCTCGGAAGTCAACTCGAAGGCTCTGCAACGAACCGTCACTCGGTTCTACCACAACCTCGACGGACTCTCCGAGCAGAAGCAAA
ACGGACGCAAGGTCGGGAAGCTCACGTGGAAGTCTCCGAGAGAGTTCCAGAGTATAACGTATTCGCAGTCTGGCTTCGAACTCAAAAACACGAGTGGTCG
ACGCGCGACGCTCTGGCTCTCCAAAATCGGAGATATCAAACTCCGCTACCACCGCGAGATCCCCGACGAAGCAGCTATCAAAGAAGTCACAGTCAAAAAG
GAGACGACCGGCGACTGGTTCGTCTCGTTCGGCCTCGAAACTGACGAGGCTGACCTGCCCGAGAAACCCGACGTGGACTCGCTCAATACAGACAATAGCG
TCGGCGTTGACCTCGGCATCCTCAACTACATCCACACTTCGGACGGGACGACTGTAGACTGGATCGACCTCGAAGACGAATACGAGCGACTGTGCCGTGA
ACAACGTAAACTCTCACGGAAAGAACACGGGTCAAACAACTACGAAAACCAGCGCCAAGCGGTTGCGAAGGTCAAACGCCATATCCGTCAGAAGGTGCTG
GACTACCAGCACAAGCTCACGACATGGCTCGTCACAGAGTACGATGCGGTGTTCGTGGAAGACCTGAACGTCGCTCAGATGCTTCAAGGCGATGGGAACG
CGCGGAACAAGCAGGCTGCGGCGTGGCGACAGTTCATCACCTTGCTCGAATACAAGGGTGAGCTGTACGGGACACACGTCGTGCAAGTCGAAGCGAGAGG
AACGACGAAAGAGTGTGCGACGTGTGGTGTGGAGACAGCGAAACCCATCTGGATCAGGGAGCACTCGTGTCCGAGTTGTGGGTTCGAGTGTGACCGTGAC
GCGAACGCGGCGATGAACGTCTTGCAGAGAGGCTTTGCTGAACTAGGGCTGGGATGGCCCGAATCAACGCCTGTGGAGACTGCGCTCCCTACGGACACCA
CTCGCGTGTCTGCAAAGCGCGTCGTCGAAACAGGAAGCCCCACCCTCAACGAAGCCACGCCTGTGGCTGAGTAGGGTGGGGTAGTTCAC
ATATCGATAATCAATAGACAGCGATGGAGTACAGTCACCGCTACTATGCCTACCCGACACAAGAGGTAGCGGCTGAACTAGACTACCATATCGACATTCA
TCGCCAAGCGTACAACTACACCCTGTACGAGTACGACAACGTGGACGCCGACAACATCGGCTCTGCGTACAAGCACCACTCCCGACTCCCCGACTGGAAA
GACGAGTTCCCTGTTTTCTCGGAAGTCAACTCGAAGGCTCTGCAACGAACCGTCACTCGGTTCTACCACAACCTCGACGGACTCTCCGAGCAGAAGCAAA
ACGGACGCAAGGTCGGGAAGCTCACGTGGAAGTCTCCGAGAGAGTTCCAGAGTATAACGTATTCGCAGTCTGGCTTCGAACTCAAAAACACGAGTGGTCG
ACGCGCGACGCTCTGGCTCTCCAAAATCGGAGATATCAAACTCCGCTACCACCGCGAGATCCCCGACGAAGCAGCTATCAAAGAAGTCACAGTCAAAAAG
GAGACGACCGGCGACTGGTTCGTCTCGTTCGGCCTCGAAACTGACGAGGCTGACCTGCCCGAGAAACCCGACGTGGACTCGCTCAATACAGACAATAGCG
TCGGCGTTGACCTCGGCATCCTCAACTACATCCACACTTCGGACGGGACGACTGTAGACTGGATCGACCTCGAAGACGAATACGAGCGACTGTGCCGTGA
ACAACGTAAACTCTCACGGAAAGAACACGGGTCAAACAACTACGAAAACCAGCGCCAAGCGGTTGCGAAGGTCAAACGCCATATCCGTCAGAAGGTGCTG
GACTACCAGCACAAGCTCACGACATGGCTCGTCACAGAGTACGATGCGGTGTTCGTGGAAGACCTGAACGTCGCTCAGATGCTTCAAGGCGATGGGAACG
CGCGGAACAAGCAGGCTGCGGCGTGGCGACAGTTCATCACCTTGCTCGAATACAAGGGTGAGCTGTACGGGACACACGTCGTGCAAGTCGAAGCGAGAGG
AACGACGAAAGAGTGTGCGACGTGTGGTGTGGAGACAGCGAAACCCATCTGGATCAGGGAGCACTCGTGTCCGAGTTGTGGGTTCGAGTGTGACCGTGAC
GCGAACGCGGCGATGAACGTCTTGCAGAGAGGCTTTGCTGAACTAGGGCTGGGATGGCCCGAATCAACGCCTGTGGAGACTGCGCTCCCTACGGACACCA
CTCGCGTGTCTGCAAAGCGCGTCGTCGAAACAGGAAGCCCCACCCTCAACGAAGCCACGCCTGTGGCTGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 124 | 1374 | + | No |
AG : TnpB
ORF sequence :
MEYSHRYYAYPTQEVAAELDYHIDIHRQAYNYTLYEYDNVDADNIGSAYKHHSRLPDWKDEFPVFSEVNSKALQRTVTRFYHNLDGLSEQKQNGRKVGKL
TWKSPREFQSITYSQSGFELKNTSGRRATLWLSKIGDIKLRYHREIPDEAAIKEVTVKKETTGDWFVSFGLETDEADLPEKPDVDSLNTDNSVGVDLGIL
NYIHTSDGTTVDWIDLEDEYERLCREQRKLSRKEHGSNNYENQRQAVAKVKRHIRQKVLDYQHKLTTWLVTEYDAVFVEDLNVAQMLQGDGNARNKQAAA
WRQFITLLEYKGELYGTHVVQVEARGTTKECATCGVETAKPIWIREHSCPSCGFECDRDANAAMNVLQRGFAELGLGWPESTPVETALPTDTTRVSAKRV
VETGSPTLNEATPVAE
TWKSPREFQSITYSQSGFELKNTSGRRATLWLSKIGDIKLRYHREIPDEAAIKEVTVKKETTGDWFVSFGLETDEADLPEKPDVDSLNTDNSVGVDLGIL
NYIHTSDGTTVDWIDLEDEYERLCREQRKLSRKEHGSNNYENQRQAVAKVKRHIRQKVLDYQHKLTTWLVTEYDAVFVEDLNVAQMLQGDGNARNKQAAA
WRQFITLLEYKGELYGTHVVQVEARGTTKECATCGVETAKPIWIREHSCPSCGFECDRDANAAMNVLQRGFAELGLGWPESTPVETALPTDTTRVSAKRV
VETGSPTLNEATPVAE
Blast result :
Comments
ISHko1 is 92% aa similar to ISHarch8.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.