ISHarch17
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002988 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 1585 bp
Ends
Left end : CGTAATGCAAGGTGGAGCCTCCGGCCTCAAGGAGCGACTGAAGGGAGCGAGTAGGCAGGAGAGGATACGAGGGACCAAAGGTCCCTCTGACCGTGCGAAC II struct. : Yes
Right end : CGGAGCCTTTCGAGGCCTCGTCGGAGCTTGCTCCGACGGTGGCCCCACCCTCAAGGACCGAGGCGCGTATGCGCCGAGGGAGTAGGGTGGGGTAGTTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCTTCAGCCGTT | TCAG | TGGACGGTACCG | ttac |
GGAGCGACGGCT | TCAG | TTGTACTCCCGC | ttac |
ATCGGCAGCGGC | TCAG | TTGACGCGGTTG | ttac |
AGGCAAGCAGCA | TCAG | CAGGACCCCTGA | ttac |
DNA sequence
CGTAATGCAAGGTGGAGCCTCCGGCCTCAAGGAGCGACTGAAGGGAGCGAGTAGGCAGGAGAGGATACGAGGGACCAAAGGTCCCTCTGACCGTGCGAAC
GGGCCTGCGGCCCGTGAGCAGAAACCGACATGGTACGACGGAACCGGCACGCTACGACCAACCGACTCCCGAACGCATAAGTACCGTCGGGTTCTCTCTG
AAGTATGGACGTGCGTCGAACCGCCGTCGTGAAACTCGCCGTTTCCGACGAGCAACGCGACGCGCTCCACCGAACCGCCGAGCAATACCTGTACTGCGCG
AACCGAACCGCCGACTACTGTTGGTCCAACACCTCATACACTGAGTGCAAAACCAACAAACGAACAGTGCGGGACGCACTCTACTCCGAACTCCGAAAGG
AAACGGAGTTGCAGGCACAACTCGTCCAAGCCGCTATCCGACGCGCCGTCGAAGCTGTCAAAGGCGTTGTCGAACGCTGGAAGAAAGGACAGCACATCTC
GTGTCCGACGTTCACCGCTGAAACGATGGACTACGACATGCGAAGCGCGACATTCTACCGAAACAAGGTGTCGCTGGCAACTGTTGAGGGGCGGGTCGAA
TCCTCGTTCATTCTTCCGGCAGACAGTCCGACACCCTACGAGCGGTACGTACTCTCCGAGGACTACGAGTTCCGCGAGAGTACGCTTCGGTATGACGCGG
TAACCGACGGGTTCTACCTCAACATCTCGACTCAACGGATTAACGACGACGGTGAGGTTCCGGCAGATACCGGGCACCCCGACCAAACGGTCCTCGGTAT
CGACCTCGGCGTCAACTCGTTGGCCGTCTCCTCAACCGCCACATTCTGGCAAGGAGACGAGTACGACCACTGGTGTGGCGAGTTTGAGAAGCGACGTGGA
GAGATGCAACAGCGCGGCACGCAAGCCGCCCACAACGCCCTGCTTCGCCTCGGCAAGCGCGAAGAAGCGTGGCGGAAACAGTACATCCACACAGTCGCCA
ACGAACTCGTCTCGGAGGCCGTTGAACACGACTGCGACGTTATTGTGTTCGAGGACTTAACCGACATCCGAGAGCGGCTTCCACAGGCGAAGTGGCACCA
TGTGTGGGCGTTCCGACGCCTCTTCGAGTACGTCTCCTACAAGGCTCCTGAACAGGGTGTTTCCGTGGAACAGGTCGAGCCGAACCACACGTCCCAACGC
TGTTCTCGGACGGACTGCGGGTTCACACACCCAAACAACCGCAACGGCGAACAGTTCTGTTGCCAGAAGTGCGGGTACGAAGTGAACGCTGACTACAACG
GTGCGAAGAACATCGGGCTACGGTACGCTCGAAAGCGAATCCACAAACTCCGTTCCTCGCCCAAGTCGGGGAGCGGAGACGCAGAAGTAGACCTGCGTAT
AAATGGTGGGACGTTGAACGGTGAGAGTCACCAGCCTATTGCCGGAGACTGATTGCCGGGAGTCCACATCAAAGCCACCGAAAGGCGGAGCCTTTCGAGG
CCTCGTCGGAGCTTGCTCCGACGGTGGCCCCACCCTCAAGGACCGAGGCGCGTATGCGCCGAGGGAGTAGGGTGGGGTAGTTTAC
GGGCCTGCGGCCCGTGAGCAGAAACCGACATGGTACGACGGAACCGGCACGCTACGACCAACCGACTCCCGAACGCATAAGTACCGTCGGGTTCTCTCTG
AAGTATGGACGTGCGTCGAACCGCCGTCGTGAAACTCGCCGTTTCCGACGAGCAACGCGACGCGCTCCACCGAACCGCCGAGCAATACCTGTACTGCGCG
AACCGAACCGCCGACTACTGTTGGTCCAACACCTCATACACTGAGTGCAAAACCAACAAACGAACAGTGCGGGACGCACTCTACTCCGAACTCCGAAAGG
AAACGGAGTTGCAGGCACAACTCGTCCAAGCCGCTATCCGACGCGCCGTCGAAGCTGTCAAAGGCGTTGTCGAACGCTGGAAGAAAGGACAGCACATCTC
GTGTCCGACGTTCACCGCTGAAACGATGGACTACGACATGCGAAGCGCGACATTCTACCGAAACAAGGTGTCGCTGGCAACTGTTGAGGGGCGGGTCGAA
TCCTCGTTCATTCTTCCGGCAGACAGTCCGACACCCTACGAGCGGTACGTACTCTCCGAGGACTACGAGTTCCGCGAGAGTACGCTTCGGTATGACGCGG
TAACCGACGGGTTCTACCTCAACATCTCGACTCAACGGATTAACGACGACGGTGAGGTTCCGGCAGATACCGGGCACCCCGACCAAACGGTCCTCGGTAT
CGACCTCGGCGTCAACTCGTTGGCCGTCTCCTCAACCGCCACATTCTGGCAAGGAGACGAGTACGACCACTGGTGTGGCGAGTTTGAGAAGCGACGTGGA
GAGATGCAACAGCGCGGCACGCAAGCCGCCCACAACGCCCTGCTTCGCCTCGGCAAGCGCGAAGAAGCGTGGCGGAAACAGTACATCCACACAGTCGCCA
ACGAACTCGTCTCGGAGGCCGTTGAACACGACTGCGACGTTATTGTGTTCGAGGACTTAACCGACATCCGAGAGCGGCTTCCACAGGCGAAGTGGCACCA
TGTGTGGGCGTTCCGACGCCTCTTCGAGTACGTCTCCTACAAGGCTCCTGAACAGGGTGTTTCCGTGGAACAGGTCGAGCCGAACCACACGTCCCAACGC
TGTTCTCGGACGGACTGCGGGTTCACACACCCAAACAACCGCAACGGCGAACAGTTCTGTTGCCAGAAGTGCGGGTACGAAGTGAACGCTGACTACAACG
GTGCGAAGAACATCGGGCTACGGTACGCTCGAAAGCGAATCCACAAACTCCGTTCCTCGCCCAAGTCGGGGAGCGGAGACGCAGAAGTAGACCTGCGTAT
AAATGGTGGGACGTTGAACGGTGAGAGTCACCAGCCTATTGCCGGAGACTGATTGCCGGGAGTCCACATCAAAGCCACCGAAAGGCGGAGCCTTTCGAGG
CCTCGTCGGAGCTTGCTCCGACGGTGGCCCCACCCTCAAGGACCGAGGCGCGTATGCGCCGAGGGAGTAGGGTGGGGTAGTTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1248 bp | 415 aa | 205 | 1452 | + | No |
AG : TnpB
ORF sequence :
MDVRRTAVVKLAVSDEQRDALHRTAEQYLYCANRTADYCWSNTSYTECKTNKRTVRDALYSELRKETELQAQLVQAAIRRAVEAVKGVVERWKKGQHISC
PTFTAETMDYDMRSATFYRNKVSLATVEGRVESSFILPADSPTPYERYVLSEDYEFRESTLRYDAVTDGFYLNISTQRINDDGEVPADTGHPDQTVLGID
LGVNSLAVSSTATFWQGDEYDHWCGEFEKRRGEMQQRGTQAAHNALLRLGKREEAWRKQYIHTVANELVSEAVEHDCDVIVFEDLTDIRERLPQAKWHHV
WAFRRLFEYVSYKAPEQGVSVEQVEPNHTSQRCSRTDCGFTHPNNRNGEQFCCQKCGYEVNADYNGAKNIGLRYARKRIHKLRSSPKSGSGDAEVDLRIN
GGTLNGESHQPIAGD
PTFTAETMDYDMRSATFYRNKVSLATVEGRVESSFILPADSPTPYERYVLSEDYEFRESTLRYDAVTDGFYLNISTQRINDDGEVPADTGHPDQTVLGID
LGVNSLAVSSTATFWQGDEYDHWCGEFEKRRGEMQQRGTQAAHNALLRLGKREEAWRKQYIHTVANELVSEAVEHDCDVIVFEDLTDIRERLPQAKWHHV
WAFRRLFEYVSYKAPEQGVSVEQVEPNHTSQRCSRTDCGFTHPNNRNGEQFCCQKCGYEVNADYNGAKNIGLRYARKRIHKLRSSPKSGSGDAEVDLRIN
GGTLNGESHQPIAGD
Blast result :
Comments
ISHarch17 is 93% aa similar to ISHaru3.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank