ISHti10
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF571520 | ND | Halorhabdus tiamatea | Halorhabdus tiamatea SARL4B |
DNA section
IS Length : 1387 bp
Ends
Left end : CAGAATGAGGCGAGAATGCCCCTTCCTCAAGGAGCGAGTATTGCGAGTGAGTAGGGAGGGGATGAATCGCCGCACAAGATACAAACCATTAAGTAAATAT II struct. : Yes
Right end : TACGGACACCACTTCGGTGTCTGCAAAGCGCGTCATCGAAACAGGAAGCCCCACCCTCAACGAAGCCACAACAGTGGCTGAGTAGGGTGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCCCGGCTGGCT | TTAC | GCGGTCGTGAGT | tcac |
DNA sequence
CAGAATGAGGCGAGAATGCCCCTTCCTCAAGGAGCGAGTATTGCGAGTGAGTAGGGAGGGGATGAATCGCCGCACAAGATACAAACCATTAAGTAAATAT
ATCAACAATCAATAGACTGCGATGGAGTACAGTCACCGTTACCCTGCATACCCGACACAAGAGGTAGCGGCTGAACTGGAACATCATATCGACATTCATC
GCCAAGCGTACAACTACACTCTGTACGAATACGAGAACGTGGATGCCGACGACATCGGCTCCGCGTACAAACACCACTACCGACTTCCCGATTGGAAAGA
CGAGTTCTCCGTCTTCTCGGAGGTCAACTCGAAGGCTTTGCAACGAACCGTCACACGGTTCTACGACAACCTCGACGGACTCTCCGAACAGAAAGAGAAC
GGTCGAACGGTCGGGAAACTCAATTGGAAGTCACCGAGAGAGTTCCAAAGTATGACGTTTTCGCAGTCCGGCTTCGAACTCAAAAACACGAGTGGCCGAC
ACGCGACACTCTGGCTCTCCAAAATCGGTGACATTCCGATTCGCTATCACCGGGAGATCCCTGACGAAGCGGATATCAAAGAAGTCACGGTCAAGAAGGA
GACAACCGGTGACTGGTTCGTCTCGTTCGGACTGGAAACCGACGAAACTGACCTACCCGAGAAGCCCGACGTGGATTCACTGAACGTGAACAATAGCGTC
GGGATTGACCTCGGCATCCTGAACTACATCCACACCTCGAACGGTAAAACCGTGGACTGGCTCGACCTCGAAGACGAATACGAGCGTCTGCGCCGTGAAC
AACGCAAGTTGTCGCACAAGGAGCAAGGGTCGAATAACTACGAGAAACAACGCCGGGAAGTGGCGAAGGTCAAGCGTCACATCCGGCGGAAGGTGCTGGA
CTACCAGCACAAGATTACGACATGGCTTGTCCGCGAATACGACGCCGTATTCGTCGAGGACTTGAACGTGAAGGGGATGCTGAAACAGTCGCATAATGCT
CAGAACAAGCAGGATGCGGCGTGGCGACAGTTCATCACCCTTCTCGAATACAAGGCTGGCCTGTATGGCTGTCACGTCAAGCAGGTTGAAGCACGAGGGA
CGACGACGGAATGTGCGTCGTGCGGTGTGGAGACTGCGAAGCCGATTTGGGTTCGGGAGCACTCTTGCCCGAGTTGTGGGTTCGAGTGTGACCGGGATGC
GAATGCGGCGATGAACGTACTGCAACGCGGTTTTTCTGAACTAGGGCTGGAATGGCCCGAATCCACGTCTGTGGAGACTGCGCTCCCTACGGACACCACT
TCGGTGTCTGCAAAGCGCGTCATCGAAACAGGAAGCCCCACCCTCAACGAAGCCACAACAGTGGCTGAGTAGGGTGGGGTAGTTCAC
ATCAACAATCAATAGACTGCGATGGAGTACAGTCACCGTTACCCTGCATACCCGACACAAGAGGTAGCGGCTGAACTGGAACATCATATCGACATTCATC
GCCAAGCGTACAACTACACTCTGTACGAATACGAGAACGTGGATGCCGACGACATCGGCTCCGCGTACAAACACCACTACCGACTTCCCGATTGGAAAGA
CGAGTTCTCCGTCTTCTCGGAGGTCAACTCGAAGGCTTTGCAACGAACCGTCACACGGTTCTACGACAACCTCGACGGACTCTCCGAACAGAAAGAGAAC
GGTCGAACGGTCGGGAAACTCAATTGGAAGTCACCGAGAGAGTTCCAAAGTATGACGTTTTCGCAGTCCGGCTTCGAACTCAAAAACACGAGTGGCCGAC
ACGCGACACTCTGGCTCTCCAAAATCGGTGACATTCCGATTCGCTATCACCGGGAGATCCCTGACGAAGCGGATATCAAAGAAGTCACGGTCAAGAAGGA
GACAACCGGTGACTGGTTCGTCTCGTTCGGACTGGAAACCGACGAAACTGACCTACCCGAGAAGCCCGACGTGGATTCACTGAACGTGAACAATAGCGTC
GGGATTGACCTCGGCATCCTGAACTACATCCACACCTCGAACGGTAAAACCGTGGACTGGCTCGACCTCGAAGACGAATACGAGCGTCTGCGCCGTGAAC
AACGCAAGTTGTCGCACAAGGAGCAAGGGTCGAATAACTACGAGAAACAACGCCGGGAAGTGGCGAAGGTCAAGCGTCACATCCGGCGGAAGGTGCTGGA
CTACCAGCACAAGATTACGACATGGCTTGTCCGCGAATACGACGCCGTATTCGTCGAGGACTTGAACGTGAAGGGGATGCTGAAACAGTCGCATAATGCT
CAGAACAAGCAGGATGCGGCGTGGCGACAGTTCATCACCCTTCTCGAATACAAGGCTGGCCTGTATGGCTGTCACGTCAAGCAGGTTGAAGCACGAGGGA
CGACGACGGAATGTGCGTCGTGCGGTGTGGAGACTGCGAAGCCGATTTGGGTTCGGGAGCACTCTTGCCCGAGTTGTGGGTTCGAGTGTGACCGGGATGC
GAATGCGGCGATGAACGTACTGCAACGCGGTTTTTCTGAACTAGGGCTGGAATGGCCCGAATCCACGTCTGTGGAGACTGCGCTCCCTACGGACACCACT
TCGGTGTCTGCAAAGCGCGTCATCGAAACAGGAAGCCCCACCCTCAACGAAGCCACAACAGTGGCTGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 122 | 1372 | + | No |
AG : TnpB
ORF sequence :
MEYSHRYPAYPTQEVAAELEHHIDIHRQAYNYTLYEYENVDADDIGSAYKHHYRLPDWKDEFSVFSEVNSKALQRTVTRFYDNLDGLSEQKENGRTVGKL
NWKSPREFQSMTFSQSGFELKNTSGRHATLWLSKIGDIPIRYHREIPDEADIKEVTVKKETTGDWFVSFGLETDETDLPEKPDVDSLNVNNSVGIDLGIL
NYIHTSNGKTVDWLDLEDEYERLRREQRKLSHKEQGSNNYEKQRREVAKVKRHIRRKVLDYQHKITTWLVREYDAVFVEDLNVKGMLKQSHNAQNKQDAA
WRQFITLLEYKAGLYGCHVKQVEARGTTTECASCGVETAKPIWVREHSCPSCGFECDRDANAAMNVLQRGFSELGLEWPESTSVETALPTDTTSVSAKRV
IETGSPTLNEATTVAE
NWKSPREFQSMTFSQSGFELKNTSGRHATLWLSKIGDIPIRYHREIPDEADIKEVTVKKETTGDWFVSFGLETDETDLPEKPDVDSLNVNNSVGIDLGIL
NYIHTSNGKTVDWLDLEDEYERLRREQRKLSHKEQGSNNYEKQRREVAKVKRHIRRKVLDYQHKITTWLVREYDAVFVEDLNVKGMLKQSHNAQNKQDAA
WRQFITLLEYKAGLYGCHVKQVEARGTTTECASCGVETAKPIWVREHSCPSCGFECDRDANAAMNVLQRGFSELGLEWPESTSVETALPTDTTSVSAKRV
IETGSPTLNEATTVAE
Blast result :
Comments
ISHti10 is 94% aa similar to ISHwa25.
References
1] Pfeiffer F. (2015) Direct submission to ISfinder
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)