ISHala4

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halobiforma lacisalsi
Halobiforma lacisalsi
DNA section
IS Length : 1280 bp

Ends


IR Length : 16

IRL : CTCAGCTTTGCACGTTGAAGTAGGAGCGTGACGTAGGAAGTGCCAAAGAC
IRR : CTCAGCTTTGCACGTTAGCGTCGGTGGTTGAGTGAACGAAGAGGTGGTCG

Insertion site


Left flankDirect repeatRight flankDR Length
GATTCTTTCCTAACCAACACAAAAGAG7

DNA sequence

CTCAGCTTTGCACGTTGAAGTAGGAGCGTGACGTAGGAAGTGCCAAAGACAGATGATGCCGATCACGGATTTCCTGTCGTGTACGCGCGTGTTCGACGAG
TTCGACTCGCTGTCACCGGCACAACGCCGTCATGCCAAAACCTACGCCACAGGTCTTGTTGCGGCCAGCAACAAGACCGTGGCGGGCATCGCACGCGAAG
TTCTTCCAGCCAGCGGCAAACGCGCTCTCAACAAGTTCCTCACCGAGTACGACTGGGACGAACAGCAATTTAACCACGAACGCCTCGAAGAACTCCAAAA
ACACGGCGAAACACGTTGGTCGAAGGATGGCTACATCATCCTCGACGACACGATCACCGAGAAAGCCGGGGACGAAGTCCCCGGCGTCGGACACTTCTAT
GATCACGCCGAAGGTGACACTTTCTGGGGCCAAGACCTCATCTACGCCTTCTACGCTGACGACAAAACTGCCTACCCACTCACTTTCCGCCTCTACGAAA
AACAGGACGAAGATGACCAAAACCACGACACCAAGTACGATCTCGCCCGTGAGATCGTCACCGAACTCGAAGACGAGGTAGGTGTCCCGGCGGACACCTA
CCTCTTCGACTCGTGGTTCGCTCACGATTCTGCCCTCGTCGAACACATCGAATCCTACGGTAACGACTGGATCGGCCCGCTCCGGAGCAACCGACAGGTA
ACCTACGCCGGCGAAGAGATCAGCGTCGATGCGCTGGCAGAGCGCATCGACACCGTCGAGCGTAACGTTGAGGACGAGACCTACCACATCTGGACGAAGA
AGCTTCCCGTCTCCCAACTGGGAGACGTGAAGCTGGTCATCGCCGAGAAAGAAACTGACGAAGACGACGAAGAGAACCCGGTCAAGTACCTCGCCACGAA
CAAAATCGACGCACCGACCCAGCACGTGATCCGCTCCTACGGGATGCGGTGGCGCATCGAGACGTTCTTCGAGGACTCGAAGCAGGATCTCGGCCTAGGA
GACTGCGAGATGCAGACCGACGAAGGTGCCAGTCGGCACTGGCACCTTCTGATGGCTGCCTACAGTCTCGTTCGTCTTGATCCTGAGTCGAGCGCCTTGG
GGACGGTTCGCTCGAAAGCGTCATCGCTTCGAGCGAACCTCGAACATTCGCTGAAGGAAGCCGTCTACAACCTTCTCTCGTGGGTTCGGGACAACGATGA
TCGTGGCGTCGATGACCTCATGGAAGAGATCGACCACCTCTTCGTTCACTCAACCACCGACGCTAACGTGCAAAGCTGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1227 bp408 aa531279+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMPITDFLSCTRVFDEFDSLSPAQRRHAKTYATGLVAASNKTVAGIAREVLPASGKRALNKFLTEYDWDEQQFNHERLEELQKHGETRWSKDGYIILDDT
ITEKAGDEVPGVGHFYDHAEGDTFWGQDLIYAFYADDKTAYPLTFRLYEKQDEDDQNHDTKYDLAREIVTELEDEVGVPADTYLFDSWFAHDSALVEHIE
SYGNDWIGPLRSNRQVTYAGEEISVDALAERIDTVERNVEDETYHIWTKKLPVSQLGDVKLVIAEKETDEDDEENPVKYLATNKIDAPTQHVIRSYGMRW
RIETFFEDSKQDLGLGDCEMQTDEGASRHWHLLMAAYSLVRLDPESSALGTVRSKASSLRANLEHSLKEAVYNLLSWVRDNDDRGVDDLMEEIDHLFVHS
TTDANVQS

 

Blast result :
Comments
ISHala4 is 96% aa similar to ISHala1.
IS_pep_1 is C445_16809.
References
1] Pfeiffer F. (2015) Direct submission