ISHala4
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halobiforma lacisalsi | Halobiforma lacisalsi |
DNA section
IS Length : 1280 bp
Ends
IR Length : 16
IRL : CTCAGCTTTGCACGTTGAAGTAGGAGCGTGACGTAGGAAGTGCCAAAGAC
IRR : CTCAGCTTTGCACGTTAGCGTCGGTGGTTGAGTGAACGAAGAGGTGGTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATTCTTTCC | TAACCAA | CACAAAAGAG | 7 |
DNA sequence
CTCAGCTTTGCACGTTGAAGTAGGAGCGTGACGTAGGAAGTGCCAAAGACAGATGATGCCGATCACGGATTTCCTGTCGTGTACGCGCGTGTTCGACGAG
TTCGACTCGCTGTCACCGGCACAACGCCGTCATGCCAAAACCTACGCCACAGGTCTTGTTGCGGCCAGCAACAAGACCGTGGCGGGCATCGCACGCGAAG
TTCTTCCAGCCAGCGGCAAACGCGCTCTCAACAAGTTCCTCACCGAGTACGACTGGGACGAACAGCAATTTAACCACGAACGCCTCGAAGAACTCCAAAA
ACACGGCGAAACACGTTGGTCGAAGGATGGCTACATCATCCTCGACGACACGATCACCGAGAAAGCCGGGGACGAAGTCCCCGGCGTCGGACACTTCTAT
GATCACGCCGAAGGTGACACTTTCTGGGGCCAAGACCTCATCTACGCCTTCTACGCTGACGACAAAACTGCCTACCCACTCACTTTCCGCCTCTACGAAA
AACAGGACGAAGATGACCAAAACCACGACACCAAGTACGATCTCGCCCGTGAGATCGTCACCGAACTCGAAGACGAGGTAGGTGTCCCGGCGGACACCTA
CCTCTTCGACTCGTGGTTCGCTCACGATTCTGCCCTCGTCGAACACATCGAATCCTACGGTAACGACTGGATCGGCCCGCTCCGGAGCAACCGACAGGTA
ACCTACGCCGGCGAAGAGATCAGCGTCGATGCGCTGGCAGAGCGCATCGACACCGTCGAGCGTAACGTTGAGGACGAGACCTACCACATCTGGACGAAGA
AGCTTCCCGTCTCCCAACTGGGAGACGTGAAGCTGGTCATCGCCGAGAAAGAAACTGACGAAGACGACGAAGAGAACCCGGTCAAGTACCTCGCCACGAA
CAAAATCGACGCACCGACCCAGCACGTGATCCGCTCCTACGGGATGCGGTGGCGCATCGAGACGTTCTTCGAGGACTCGAAGCAGGATCTCGGCCTAGGA
GACTGCGAGATGCAGACCGACGAAGGTGCCAGTCGGCACTGGCACCTTCTGATGGCTGCCTACAGTCTCGTTCGTCTTGATCCTGAGTCGAGCGCCTTGG
GGACGGTTCGCTCGAAAGCGTCATCGCTTCGAGCGAACCTCGAACATTCGCTGAAGGAAGCCGTCTACAACCTTCTCTCGTGGGTTCGGGACAACGATGA
TCGTGGCGTCGATGACCTCATGGAAGAGATCGACCACCTCTTCGTTCACTCAACCACCGACGCTAACGTGCAAAGCTGAG
TTCGACTCGCTGTCACCGGCACAACGCCGTCATGCCAAAACCTACGCCACAGGTCTTGTTGCGGCCAGCAACAAGACCGTGGCGGGCATCGCACGCGAAG
TTCTTCCAGCCAGCGGCAAACGCGCTCTCAACAAGTTCCTCACCGAGTACGACTGGGACGAACAGCAATTTAACCACGAACGCCTCGAAGAACTCCAAAA
ACACGGCGAAACACGTTGGTCGAAGGATGGCTACATCATCCTCGACGACACGATCACCGAGAAAGCCGGGGACGAAGTCCCCGGCGTCGGACACTTCTAT
GATCACGCCGAAGGTGACACTTTCTGGGGCCAAGACCTCATCTACGCCTTCTACGCTGACGACAAAACTGCCTACCCACTCACTTTCCGCCTCTACGAAA
AACAGGACGAAGATGACCAAAACCACGACACCAAGTACGATCTCGCCCGTGAGATCGTCACCGAACTCGAAGACGAGGTAGGTGTCCCGGCGGACACCTA
CCTCTTCGACTCGTGGTTCGCTCACGATTCTGCCCTCGTCGAACACATCGAATCCTACGGTAACGACTGGATCGGCCCGCTCCGGAGCAACCGACAGGTA
ACCTACGCCGGCGAAGAGATCAGCGTCGATGCGCTGGCAGAGCGCATCGACACCGTCGAGCGTAACGTTGAGGACGAGACCTACCACATCTGGACGAAGA
AGCTTCCCGTCTCCCAACTGGGAGACGTGAAGCTGGTCATCGCCGAGAAAGAAACTGACGAAGACGACGAAGAGAACCCGGTCAAGTACCTCGCCACGAA
CAAAATCGACGCACCGACCCAGCACGTGATCCGCTCCTACGGGATGCGGTGGCGCATCGAGACGTTCTTCGAGGACTCGAAGCAGGATCTCGGCCTAGGA
GACTGCGAGATGCAGACCGACGAAGGTGCCAGTCGGCACTGGCACCTTCTGATGGCTGCCTACAGTCTCGTTCGTCTTGATCCTGAGTCGAGCGCCTTGG
GGACGGTTCGCTCGAAAGCGTCATCGCTTCGAGCGAACCTCGAACATTCGCTGAAGGAAGCCGTCTACAACCTTCTCTCGTGGGTTCGGGACAACGATGA
TCGTGGCGTCGATGACCTCATGGAAGAGATCGACCACCTCTTCGTTCACTCAACCACCGACGCTAACGTGCAAAGCTGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1227 bp | 408 aa | 53 | 1279 | + | No |
Chemistry : DDE
ORF sequence :
MMPITDFLSCTRVFDEFDSLSPAQRRHAKTYATGLVAASNKTVAGIAREVLPASGKRALNKFLTEYDWDEQQFNHERLEELQKHGETRWSKDGYIILDDT
ITEKAGDEVPGVGHFYDHAEGDTFWGQDLIYAFYADDKTAYPLTFRLYEKQDEDDQNHDTKYDLAREIVTELEDEVGVPADTYLFDSWFAHDSALVEHIE
SYGNDWIGPLRSNRQVTYAGEEISVDALAERIDTVERNVEDETYHIWTKKLPVSQLGDVKLVIAEKETDEDDEENPVKYLATNKIDAPTQHVIRSYGMRW
RIETFFEDSKQDLGLGDCEMQTDEGASRHWHLLMAAYSLVRLDPESSALGTVRSKASSLRANLEHSLKEAVYNLLSWVRDNDDRGVDDLMEEIDHLFVHS
TTDANVQS
ITEKAGDEVPGVGHFYDHAEGDTFWGQDLIYAFYADDKTAYPLTFRLYEKQDEDDQNHDTKYDLAREIVTELEDEVGVPADTYLFDSWFAHDSALVEHIE
SYGNDWIGPLRSNRQVTYAGEEISVDALAERIDTVERNVEDETYHIWTKKLPVSQLGDVKLVIAEKETDEDDEENPVKYLATNKIDAPTQHVIRSYGMRW
RIETFFEDSKQDLGLGDCEMQTDEGASRHWHLLMAAYSLVRLDPESSALGTVRSKASSLRANLEHSLKEAVYNLLSWVRDNDDRGVDDLMEEIDHLFVHS
TTDANVQS
Blast result :
Comments
ISHala4 is 96% aa similar to ISHala1.
IS_pep_1 is C445_16809.
IS_pep_1 is C445_16809.
References
1] Pfeiffer F. (2015) Direct submission