ISFw1
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Francisella sp. | Francisella sp. W12-1067 |
DNA section
IS Length : 952 bp
Ends
IR Length : 17
IRL : AGACCTCTTTCGAAACTATAATATAAAGTTTATACTGGGTTTCAGAGAAA
IRR : AGACCTCTTTCGAAACTCATTTATGTAACTCCAGGTTATAAATGCCAGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
AGACCTCTTTCGAAACTATAATATAAAGTTTATACTGGGTTTCAGAGAAAGCTAATATTATGGTTTTGTATTGAAATACGCACAAGAGAAGTTTTTATCA
GAGGAACAATTCAGAAGATTAACAGGAGTCAAGCGAAGTACGTTTGAGAAGATGGTAAAAATCTTAGATGAAGCAGATAAGAAGAAAAAAGCAAAAGGAG
GTAGAAAGAACAAGCTTAACATAGAAAACCAGCTATTAATGGCCTTGGAATACATGAGGGAATATCGCACCTACTTTCACGTTAGTCAAAGTTATGGAAT
AAGTGAAAGTTCTTGCTATAAAGCGATTAAATGGATAGAAGAAACATTAATCAAGCATCCGGACTTCTCTTTGCCCGGAAGAAAAGCTTTGCTTAAAAGC
GATATGGACTATGAAGTTGTGCTCATAGACGCAACTGAAACACCATGCGAGCGCCCAAAAAAAGGGTAAAAAATAACCAGCGGATCAAGAATCGAAATAA
TAAGCAAAGGCATTTTTACTCTGGCAAGAAGAGAAGGCATACTTTAAAGGCTCAGGTTGTTGTTGATAAGAAAACTAAAGCAGTGATATGCACCGCATTT
TCAAACGGCAAGCGGCACGATTTTAGGTTGTTTAAGGAATCCAAAACCTATATCCATCCTGAAAAGAGAGTCATTACTGATACTGGATATCAAGGCATAC
AAAAGCTTCATAGCAAATCTGAGTTGCCCAAAAAGAAGAGTAAGAAAAATCTTTTAACGAAAGAAGATAAAAAGAAAAACCAAGAACTTGCGAGTCAAAG
GGTGTTGAATGAAAATGTCATTGGCATGATTAAACGATTTAAAATCGTATCTGATAAATATAAAAATAGACGAAAAAGATTTGGACTAAGATTCAATTTA
ATAGCTGGCATTTATAACCTGGAGTTACATAAATGAGTTTCGAAAGAGGTCT
GAGGAACAATTCAGAAGATTAACAGGAGTCAAGCGAAGTACGTTTGAGAAGATGGTAAAAATCTTAGATGAAGCAGATAAGAAGAAAAAAGCAAAAGGAG
GTAGAAAGAACAAGCTTAACATAGAAAACCAGCTATTAATGGCCTTGGAATACATGAGGGAATATCGCACCTACTTTCACGTTAGTCAAAGTTATGGAAT
AAGTGAAAGTTCTTGCTATAAAGCGATTAAATGGATAGAAGAAACATTAATCAAGCATCCGGACTTCTCTTTGCCCGGAAGAAAAGCTTTGCTTAAAAGC
GATATGGACTATGAAGTTGTGCTCATAGACGCAACTGAAACACCATGCGAGCGCCCAAAAAAAGGGTAAAAAATAACCAGCGGATCAAGAATCGAAATAA
TAAGCAAAGGCATTTTTACTCTGGCAAGAAGAGAAGGCATACTTTAAAGGCTCAGGTTGTTGTTGATAAGAAAACTAAAGCAGTGATATGCACCGCATTT
TCAAACGGCAAGCGGCACGATTTTAGGTTGTTTAAGGAATCCAAAACCTATATCCATCCTGAAAAGAGAGTCATTACTGATACTGGATATCAAGGCATAC
AAAAGCTTCATAGCAAATCTGAGTTGCCCAAAAAGAAGAGTAAGAAAAATCTTTTAACGAAAGAAGATAAAAAGAAAAACCAAGAACTTGCGAGTCAAAG
GGTGTTGAATGAAAATGTCATTGGCATGATTAAACGATTTAAAATCGTATCTGATAAATATAAAAATAGACGAAAAAGATTTGGACTAAGATTCAATTTA
ATAGCTGGCATTTATAACCTGGAGTTACATAAATGAGTTTCGAAAGAGGTCT
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 71 | 469 | + | No |
Description : First part of the transposase
ORF sequence :
LKYAQEKFLSEEQFRRLTGVKRSTFEKMVKILDEADKKKKAKGGRKNKLNIENQLLMALEYMREYRTYFHVSQSYGISESSCYKAIKWIEETLIKHPDFS
LPGRKALLKSDMDYEVVLIDATETPCERPKKG
LPGRKALLKSDMDYEVVLIDATETPCERPKKG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
498 bp | 165 aa | 439 | 936 | + | No |
Description : Second part of the transposase
ORF sequence :
NTMRAPKKRVKNNQRIKNRNNKQRHFYSGKKRRHTLKAQVVVDKKTKAVICTAFSNGKRHDFRLFKESKTYIHPEKRVITDTGYQGIQKLHSKSELPKKK
SKKNLLTKEDKKKNQELASQRVLNENVIGMIKRFKIVSDKYKNRRKRFGLRFNLIAGIYNLELHK
SKKNLLTKEDKKKNQELASQRVLNENVIGMIKRFKIVSDKYKNRRKRFGLRFNLIAGIYNLELHK
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
866 bp | 288 aa | 71 | 936 | + | Yes |
Chemistry : DDE
ORF sequence :
LKYAQEKFLSEEQFRRLTGVKRSTFEKMVKILDEADKKKKAKGGRKNKLNIENQLLMALEYMREYRTYFHVSQSYGISESSCYKAIKWIEETLIKHPDFS
LPGRKALLKSDMDYEVVLIDATETPCERPKKRVKNNQRIKNRNNKQRHFYSGKKRRHTLKAQVVVDKKTKAVICTAFSNGKRHDFRLFKESKTYIHPEKR
VITDTGYQGIQKLHSKSELPKKKSKKNLLTKEDKKKNQELASQRVLNENVIGMIKRFKIVSDKYKNRRKRFGLRFNLIAGIYNLELHK
LPGRKALLKSDMDYEVVLIDATETPCERPKKRVKNNQRIKNRNNKQRHFYSGKKRRHTLKAQVVVDKKTKAVICTAFSNGKRHDFRLFKESKTYIHPEKR
VITDTGYQGIQKLHSKSELPKKKSKKNLLTKEDKKKNQELASQRVLNENVIGMIKRFKIVSDKYKNRRKRFGLRFNLIAGIYNLELHK
Blast result :
Comments
ISFw1 is 83% aa similar to ISOt6.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References