ISHalh2

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halorubrum halophilum
Halorubrum halophilum
DNA section
IS Length : 929 bp

Ends


IR Length : 14/15

IRL : TGCTCTGTTGAATAGCGATCTTATCTGCCGATATCACCAGTTTAGAAGGG
IRR : TGCTGTGTTGAATAGATGTTGAGTCACGGTTACAGCGGCTCACACAGTGG

Insertion site


Left flankDirect repeatRight flankDR Length
CCACAGAGCCGAGTTTAAAGGGTTTCAG8

DNA sequence

TGCTCTGTTGAATAGCGATCTTATCTGCCGATATCACCAGTTTAGAAGGGTGAAGCCGAGGAAATCGAAGTTGATATGGAAATCGATATCCTCGACTTCA
TTGAGCAGTGTCGTGACCTAGCTAAACAAGCGTTGGGGAAGCGCGCGGGCGAGCCCGCCAGCGGCGGGTTCGCCCGCTGGATTCACGTCGTCCTACACTG
TTTTCGGCTCGAAGACGGCCACAGCTACCGTGAAACGCCGAATCGGCTGAAGTACATGGCTGAAGTTCGTGACGCTCTCGATTTAGATCGGGGCGGTCTC
CCCGATCACACGACGATCTACAAGTCGTTTGATCGGCTAAAAATGTGGGTGTGGCGGGCGCTGCTGCGCGTTTCCGCGCAGCAGCACCCGCAGTCGGGCC
ACGCCGCTCTCGACAGCACGTTCTTCGATCGCCGACGTGCGTCCTCGTACTTTCGTCAACGGGCAGGACGGACGATACAGACGCTAAAAGTGACGACATT
GACTGATGTGGAATCGCTGGCTGTTCTTGATGTTCACATCGCAGCTCGGTGGAAGCATGATACGAAGACCGGACCGCAGGTCGTCCGCCGAAACGCGGAC
GACCTGCAGTCCGTCGCCGCCGACAACGGCTTCCAAGACTGGCATACCGAGTACGAAATCGCCGCACATGACGTTGAGTACCTTGTTCATTACCGCGGCT
CGTCAGCGAAAGCAGCCGCGAACAACGCGCTCAACCGAGCAAATGGCTACTCTCAGCGGTGGATGGCCGAAACATCGTACTCAACAACGAAGCGCTCGCT
CGGCGATGCCGTGCGAGCGCTGGGCTGGTATCGGCAGTTCCGTGAGATCGTCTTGATGTTCGCCATCACCAACATAGAACCACTGTGTGAGCCGCTGTAA
CCGTGACTCAACATCTATTCAACACAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
825 bp274 aa76900+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEIDILDFIEQCRDLAKQALGKRAGEPASGGFARWIHVVLHCFRLEDGHSYRETPNRLKYMAEVRDALDLDRGGLPDHTTIYKSFDRLKMWVWRALLRVS
AQQHPQSGHAALDSTFFDRRRASSYFRQRAGRTIQTLKVTTLTDVESLAVLDVHIAARWKHDTKTGPQVVRRNADDLQSVAADNGFQDWHTEYEIAAHDV
EYLVHYRGSSAKAAANNALNRANGYSQRWMAETSYSTTKRSLGDAVRALGWYRQFREIVLMFAITNIEPLCEPL

 

Blast result :
Comments
ISHalh2 is 95% aa similar to ISHvo4.
References
1] Pfeiffer F. (2015) Direct submission