ISHalh2
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halorubrum halophilum | Halorubrum halophilum |
DNA section
IS Length : 929 bp
Ends
IR Length : 14/15
IRL : TGCTCTGTTGAATAGCGATCTTATCTGCCGATATCACCAGTTTAGAAGGG
IRR : TGCTGTGTTGAATAGATGTTGAGTCACGGTTACAGCGGCTCACACAGTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCACAGAGCC | GAGTTTAA | AGGGTTTCAG | 8 |
DNA sequence
TGCTCTGTTGAATAGCGATCTTATCTGCCGATATCACCAGTTTAGAAGGGTGAAGCCGAGGAAATCGAAGTTGATATGGAAATCGATATCCTCGACTTCA
TTGAGCAGTGTCGTGACCTAGCTAAACAAGCGTTGGGGAAGCGCGCGGGCGAGCCCGCCAGCGGCGGGTTCGCCCGCTGGATTCACGTCGTCCTACACTG
TTTTCGGCTCGAAGACGGCCACAGCTACCGTGAAACGCCGAATCGGCTGAAGTACATGGCTGAAGTTCGTGACGCTCTCGATTTAGATCGGGGCGGTCTC
CCCGATCACACGACGATCTACAAGTCGTTTGATCGGCTAAAAATGTGGGTGTGGCGGGCGCTGCTGCGCGTTTCCGCGCAGCAGCACCCGCAGTCGGGCC
ACGCCGCTCTCGACAGCACGTTCTTCGATCGCCGACGTGCGTCCTCGTACTTTCGTCAACGGGCAGGACGGACGATACAGACGCTAAAAGTGACGACATT
GACTGATGTGGAATCGCTGGCTGTTCTTGATGTTCACATCGCAGCTCGGTGGAAGCATGATACGAAGACCGGACCGCAGGTCGTCCGCCGAAACGCGGAC
GACCTGCAGTCCGTCGCCGCCGACAACGGCTTCCAAGACTGGCATACCGAGTACGAAATCGCCGCACATGACGTTGAGTACCTTGTTCATTACCGCGGCT
CGTCAGCGAAAGCAGCCGCGAACAACGCGCTCAACCGAGCAAATGGCTACTCTCAGCGGTGGATGGCCGAAACATCGTACTCAACAACGAAGCGCTCGCT
CGGCGATGCCGTGCGAGCGCTGGGCTGGTATCGGCAGTTCCGTGAGATCGTCTTGATGTTCGCCATCACCAACATAGAACCACTGTGTGAGCCGCTGTAA
CCGTGACTCAACATCTATTCAACACAGCA
TTGAGCAGTGTCGTGACCTAGCTAAACAAGCGTTGGGGAAGCGCGCGGGCGAGCCCGCCAGCGGCGGGTTCGCCCGCTGGATTCACGTCGTCCTACACTG
TTTTCGGCTCGAAGACGGCCACAGCTACCGTGAAACGCCGAATCGGCTGAAGTACATGGCTGAAGTTCGTGACGCTCTCGATTTAGATCGGGGCGGTCTC
CCCGATCACACGACGATCTACAAGTCGTTTGATCGGCTAAAAATGTGGGTGTGGCGGGCGCTGCTGCGCGTTTCCGCGCAGCAGCACCCGCAGTCGGGCC
ACGCCGCTCTCGACAGCACGTTCTTCGATCGCCGACGTGCGTCCTCGTACTTTCGTCAACGGGCAGGACGGACGATACAGACGCTAAAAGTGACGACATT
GACTGATGTGGAATCGCTGGCTGTTCTTGATGTTCACATCGCAGCTCGGTGGAAGCATGATACGAAGACCGGACCGCAGGTCGTCCGCCGAAACGCGGAC
GACCTGCAGTCCGTCGCCGCCGACAACGGCTTCCAAGACTGGCATACCGAGTACGAAATCGCCGCACATGACGTTGAGTACCTTGTTCATTACCGCGGCT
CGTCAGCGAAAGCAGCCGCGAACAACGCGCTCAACCGAGCAAATGGCTACTCTCAGCGGTGGATGGCCGAAACATCGTACTCAACAACGAAGCGCTCGCT
CGGCGATGCCGTGCGAGCGCTGGGCTGGTATCGGCAGTTCCGTGAGATCGTCTTGATGTTCGCCATCACCAACATAGAACCACTGTGTGAGCCGCTGTAA
CCGTGACTCAACATCTATTCAACACAGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
825 bp | 274 aa | 76 | 900 | + | No |
Chemistry : DDE
ORF sequence :
MEIDILDFIEQCRDLAKQALGKRAGEPASGGFARWIHVVLHCFRLEDGHSYRETPNRLKYMAEVRDALDLDRGGLPDHTTIYKSFDRLKMWVWRALLRVS
AQQHPQSGHAALDSTFFDRRRASSYFRQRAGRTIQTLKVTTLTDVESLAVLDVHIAARWKHDTKTGPQVVRRNADDLQSVAADNGFQDWHTEYEIAAHDV
EYLVHYRGSSAKAAANNALNRANGYSQRWMAETSYSTTKRSLGDAVRALGWYRQFREIVLMFAITNIEPLCEPL
AQQHPQSGHAALDSTFFDRRRASSYFRQRAGRTIQTLKVTTLTDVESLAVLDVHIAARWKHDTKTGPQVVRRNADDLQSVAADNGFQDWHTEYEIAAHDV
EYLVHYRGSSAKAAANNALNRANGYSQRWMAETSYSTTKRSLGDAVRALGWYRQFREIVLMFAITNIEPLCEPL
Blast result :
Comments
ISHalh2 is 95% aa similar to ISHvo4.
References
1] Pfeiffer F. (2015) Direct submission