ISMno20
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 |
DNA section
IS Length : 1798 bp
Ends
IR Length : 9
IRL : ctaaatcCGGTTTGGCTCTAAGTCTTTCCATCAATTCATCTAATGGAAGT
IRR : ----catCGGTTTGGCCGCGCTTGACGTACGGCTCACATGAGGGGGATTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGGTCGTGCG | CCGCCGATGC | 0 |
DNA sequence
CTAAATCCGGTTTGGCTCTAAGTCTTTCCATCAATTCATCTAATGGAAGTGGCCGGACGTCGGCGCCTCACAAAAGATTGAGTGCTGCGGTCCGGATGTC
TAGATATGGAGCCGGATCGATCTTGGAACGGCGTAAGCTATAGTTGAGCAGAACATTTGTTGTGAGACGCCCAGGATACTCGGCAACGCGCACAGTATAT
GGATCGGCCTTAAGTTCCTCAGTGGTGACCACTGGGATCCAGAGCCACAGGTCTCCGTCCCGATCGCTGATAATGCCGCCTCGGATTTGATCCCAAGGGC
GGTCTGGATCGAAAACGCACTCGCCAGGCGAGAACGCCGCTGAGGCTTGCGGCCCTTCGGACGTGGTTGATCCATCGGCCATCAGGGTTCCCCCATTCCC
TTCGATCCCTGCCGGATCGGTTAGCTCTGCCGTTTCGACCTTAGCGGTGATCTGGCCGGGCTGCTGGGGCGCTTTGCGGAGTTGCAATGCAAGGCCCAGG
CCCGCACGGGCCAGCTCGCCCGGATCGTGGTGATCCAGGAGGCTGGCCTGGACGGGTTCTGGATCCACCGCGCCCTGGTCTCAGAAGGGATCGAGAGCTA
CGTCGTGGATTCCGCATCGATTGCCGTCTCACGTCGGCATCGACGCGCCAAGACCGATCGGATTGACGGAGAGGCTCTGGTACGCACCTTGCTGGCTTAT
AAGCGGGGCGAGCCTCGGGTCTGCGCCATGGTCCGCGTCCCAACCCCGGAAGAAGAGGATCAGCGGCGCCTCTGCCGTGAGCTGAAGACGCTCGTCGGCG
AACGGATCCGGCATGTCAACAGGCTGAAGGGGGTGTTGTTCTCGCAAGGCATTACAGACTACGAGCCGCGGCGTCCGGACAGGCGTGAAAGACTCGACGA
GCTGCGCACCGGCGATGGGCGTCCCTTACCACACCATCTCAAAGCTCTGGTGCTGCGCGAACTCGAGATCGTCGAGCTGCTGGATCGGCAGATCGAGGTC
GTGAAAGCAGAACGCGATGCTCTTCTCGCATCGGCGCAACCGGAGGAGGTCCCCTCAAAGGCGGTCCAGATGCTGCTCGGCCTCAAGGGGATCGGATCCG
GTTTTGCTGGTGCGCTGTGGTCGGAAGGTCTCTTTCGGCACTTTGACAACCGGCGGCAGGTGGCGGCATATGCGGGCTTGGCGCCGACCCCATGGAAGAG
CGGCAAGATCGATCACGAGCAGGGAGTGTCGAAAGCCGGCAATCCCCGCCTGCGCGCCATCGCGGTCGAGATGGCCTGGCTCTGGCTGAGGCATCAACCA
GGATCGGCGCTTTCGCTTTGGTACCAGGATCGCGTGCGCTGCCTGGGCGGGCGGATGAAGAAGGTCATTACCGTCGCGCTGGCGAGGAAACTGCTTGTGG
CCCTCTGGAAGTACGTGACCCACGGCGTGGTCATTGAGGGGGCAGCCCTGAAGGTTGCCTGATCCTGCCCATCAACCGAACTCTCACCACTTCCACCAAG
GCCTGATCAGCTTTGGCGGATCCGGGTAGACGAACCGGCGTACGGTATGGCCTGACCAGCCGTAGTTAAGAATGGTCCCGTCCTCCCGAGCCCCACCCAC
AGAATGCGGGATGTTGGTGCAGCCGTTGCAGGCGGCGACCGGATGTGAGCTTGAGCGCGTGGTGCAAAAACGTGCTTGATGGCTGGGCTCGGACCTGTGA
TCCCGTAACTGTCAGGGAGAACTGGATGAACTGAAGCAATTCAGCCTTGATCCAATCCCCCTCATGTGAGCCGTACGTCAAGCGCGGCCAAACCGATG
TAGATATGGAGCCGGATCGATCTTGGAACGGCGTAAGCTATAGTTGAGCAGAACATTTGTTGTGAGACGCCCAGGATACTCGGCAACGCGCACAGTATAT
GGATCGGCCTTAAGTTCCTCAGTGGTGACCACTGGGATCCAGAGCCACAGGTCTCCGTCCCGATCGCTGATAATGCCGCCTCGGATTTGATCCCAAGGGC
GGTCTGGATCGAAAACGCACTCGCCAGGCGAGAACGCCGCTGAGGCTTGCGGCCCTTCGGACGTGGTTGATCCATCGGCCATCAGGGTTCCCCCATTCCC
TTCGATCCCTGCCGGATCGGTTAGCTCTGCCGTTTCGACCTTAGCGGTGATCTGGCCGGGCTGCTGGGGCGCTTTGCGGAGTTGCAATGCAAGGCCCAGG
CCCGCACGGGCCAGCTCGCCCGGATCGTGGTGATCCAGGAGGCTGGCCTGGACGGGTTCTGGATCCACCGCGCCCTGGTCTCAGAAGGGATCGAGAGCTA
CGTCGTGGATTCCGCATCGATTGCCGTCTCACGTCGGCATCGACGCGCCAAGACCGATCGGATTGACGGAGAGGCTCTGGTACGCACCTTGCTGGCTTAT
AAGCGGGGCGAGCCTCGGGTCTGCGCCATGGTCCGCGTCCCAACCCCGGAAGAAGAGGATCAGCGGCGCCTCTGCCGTGAGCTGAAGACGCTCGTCGGCG
AACGGATCCGGCATGTCAACAGGCTGAAGGGGGTGTTGTTCTCGCAAGGCATTACAGACTACGAGCCGCGGCGTCCGGACAGGCGTGAAAGACTCGACGA
GCTGCGCACCGGCGATGGGCGTCCCTTACCACACCATCTCAAAGCTCTGGTGCTGCGCGAACTCGAGATCGTCGAGCTGCTGGATCGGCAGATCGAGGTC
GTGAAAGCAGAACGCGATGCTCTTCTCGCATCGGCGCAACCGGAGGAGGTCCCCTCAAAGGCGGTCCAGATGCTGCTCGGCCTCAAGGGGATCGGATCCG
GTTTTGCTGGTGCGCTGTGGTCGGAAGGTCTCTTTCGGCACTTTGACAACCGGCGGCAGGTGGCGGCATATGCGGGCTTGGCGCCGACCCCATGGAAGAG
CGGCAAGATCGATCACGAGCAGGGAGTGTCGAAAGCCGGCAATCCCCGCCTGCGCGCCATCGCGGTCGAGATGGCCTGGCTCTGGCTGAGGCATCAACCA
GGATCGGCGCTTTCGCTTTGGTACCAGGATCGCGTGCGCTGCCTGGGCGGGCGGATGAAGAAGGTCATTACCGTCGCGCTGGCGAGGAAACTGCTTGTGG
CCCTCTGGAAGTACGTGACCCACGGCGTGGTCATTGAGGGGGCAGCCCTGAAGGTTGCCTGATCCTGCCCATCAACCGAACTCTCACCACTTCCACCAAG
GCCTGATCAGCTTTGGCGGATCCGGGTAGACGAACCGGCGTACGGTATGGCCTGACCAGCCGTAGTTAAGAATGGTCCCGTCCTCCCGAGCCCCACCCAC
AGAATGCGGGATGTTGGTGCAGCCGTTGCAGGCGGCGACCGGATGTGAGCTTGAGCGCGTGGTGCAAAAACGTGCTTGATGGCTGGGCTCGGACCTGTGA
TCCCGTAACTGTCAGGGAGAACTGGATGAACTGAAGCAATTCAGCCTTGATCCAATCCCCCTCATGTGAGCCGTACGTCAAGCGCGGCCAAACCGATG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 981 bp | 326 aa | 482 | 1462 | + | No |
Chemistry : DEDD
ORF sequence :
MQCKAQARTGQLARIVVIQEAGLDGFWIHRALVSEGIESYVVDSASIAVSRRHRRAKTDRIDGEALVRTLLAYKRGEPRVCAMVRVPTPEEEDQRRLCRE
LKTLVGERIRHVNRLKGVLFSQGITDYEPRRPDRRERLDELRTGDGRPLPHHLKALVLRELEIVELLDRQIEVVKAERDALLASAQPEEVPSKAVQMLLG
LKGIGSGFAGALWSEGLFRHFDNRRQVAAYAGLAPTPWKSGKIDHEQGVSKAGNPRLRAIAVEMAWLWLRHQPGSALSLWYQDRVRCLGGRMKKVITVAL
ARKLLVALWKYVTHGVVIEGAALKVA
LKTLVGERIRHVNRLKGVLFSQGITDYEPRRPDRRERLDELRTGDGRPLPHHLKALVLRELEIVELLDRQIEVVKAERDALLASAQPEEVPSKAVQMLLG
LKGIGSGFAGALWSEGLFRHFDNRRQVAAYAGLAPTPWKSGKIDHEQGVSKAGNPRLRAIAVEMAWLWLRHQPGSALSLWYQDRVRCLGGRMKKVITVAL
ARKLLVALWKYVTHGVVIEGAALKVA
Blast result :
Comments
ISMno20 is 80% aa similar to ISRel9.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.