ISMdi14B

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FP103042 ND Methylobacterium dichloromethanicum
Methylobacterium dichloromethanicum DM4
Methylobacterium extorquens DM4
DNA section
IS Length : 1315 bp

Ends


IR Length : 15

IRL : tcgggtAATGGGCGGCAGCTCTTCTGCGGAAGTCGATAGGATCGGCTCCG
IRR : ---gtcAATGGGCGGCAGCTCAATCCAGAGCGTTCGACGCTTTCGGGTGC

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTTCAACATCATTAGAGA0

DNA sequence

TCGGGTAATGGGCGGCAGCTCTTCTGCGGAAGTCGATAGGATCGGCTCCGCTGCCGGAAGAGGAGGCTGATTATGGAGTATTTCGCTGGCCTAGATGTCT
CGATGGAGGAGACGCACGTCTGCGTGGTCGACCGCGACGGAGTAGTTGCCCATCAGGCGAAGGTGGCCTCTACGCCTGCCGACATCGCGCAGGAACTCGC
GAAGGCGCCTGCCTGCCGTCGGGTTGTGTTCGAGACAGGCCGGATGGCTCCAATGCTGTTCCACGGCTTGGCCGACCATGGTGTGCCGGTCGTCTGCGCC
GAGAGCCGGCAGGCTTACCAAGCCTTGAAGTCGCTTACGACGCACAAGACCGACCGGAACGATGCGCGCGGTCTGGCTCATCTGGCACGAACAGGCTTCT
TCAAGCCGGTGCACGTGAAGTCGCTGCCGGCACACGCCGTGAGGTCGTTGATCATCGCGCGCAAGAAGCTGGTCGGCCAGCGGGTCACGCTGGAGAACCA
GATCCGCGGTCTTGCCGTCGTGTTCGGGGTGCGGCTACCGCGGGCGCTCAGCCCTGCGTTCATCGAGCAGGCTCTGCGTTCGAGCGAGGGGATCGCTGGA
CTGTCCGCCGCCATGCGCGGCCTGATCGGAGCACGAGCTGCCGTGCTGGCAGCTGTCGCCGCCATCGATGCAGATATCAAGCGGATGGTCCGAGCCTCAG
ATGCCTGCCGGCGGTTGATGACGATCCCGGGCGTCGGTCAACTCACCGCGCTCGCTTTCACGGCAGCCGTCGATGATCCTGAGCGCTTCAGGCGCTCCCG
CGACGTCGGTCCGTATCTTGGCCTTGTTCCGCGACGCTACCAATCGGGCGAGGTCGACTACACCGGTAGCATCTCGAAGTGCGGCGACCGGCGGGTCAGA
ACGCTGCTGTACGAAGCCGCCAACGTGATGCTGACGCGCTGCAGGCAGCCCCTGAAGCTGAAGGCTTGGGCTCTGGCCATCGCGAAGCGCTCTACGATGC
GCAAGGCCCGCATCGCTCTCGCGCGCCGGCTAGCGATCATCATGCACGCGATGCTGCGGCAGGGCACCGAGTTCCGACCTGCGTAGCGGCTGACATCACC
GGACAGGAGGCCGAACCGAGCTCCCGAGCGGGAGCGACGCCCGAGGGAGGGAGCAGAAGATGGCGCCGATTCTGTAGCATGCGGCCTTGCGCCGACTGCG
CTTTCAACCGAGCCGCTTTGCACCCAGCTGACCCCATCAAGTGCCGCACGAGCACGTAGAGAACGCAGGCACCCGAAAGCGTCGAACGCTCTGGATTGAG
CTGCCGCCCATTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1014 bp337 aa731086+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MEYFAGLDVSMEETHVCVVDRDGVVAHQAKVASTPADIAQELAKAPACRRVVFETGRMAPMLFHGLADHGVPVVCAESRQAYQALKSLTTHKTDRNDARG
LAHLARTGFFKPVHVKSLPAHAVRSLIIARKKLVGQRVTLENQIRGLAVVFGVRLPRALSPAFIEQALRSSEGIAGLSAAMRGLIGARAAVLAAVAAIDA
DIKRMVRASDACRRLMTIPGVGQLTALAFTAAVDDPERFRRSRDVGPYLGLVPRRYQSGEVDYTGSISKCGDRRVRTLLYEAANVMLTRCRQPLKLKAWA
LAIAKRSTMRKARIALARRLAIIMHAMLRQGTEFRPA

 

Blast result :
Comments
ISMdi14B is 96% aa similar to ISMdi14.
References