ISMae40

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010296 ND Microcystis aeruginosa
Microcystis aeruginosa NIES-843
Microcystis aeruginosa 9808
DNA section
IS Length : 1300 bp

Ends


Left end : TGTATCTTGAGAAGTAGGCAACCCGTCCCAACCTAGGTAAAAAATACCGCTTTGTAGCTTGGGTGCCTATATTCTGAAAAAGGGCGTGGACATCCAGTTC
Right end : TTTCATCGCTGACAAAACGGATGACTGGTGCCGTTACTTTGTCTTGCCTATTTGGGGTACAAAAGATTTTCTTTATTCCCCTTGACTTTTAAGACAATCG

Insertion site


Left flankDirect repeatRight flankDR Length
AACCCAACCTCTACGTTCAT0

DNA sequence

TGTATCTTGAGAAGTAGGCAACCCGTCCCAACCTAGGTAAAAAATACCGCTTTGTAGCTTGGGTGCCTATATTCTGAAAAAGGGCGTGGACATCCAGTTC
AACCGAGGTGCTTGACACCGTTGGGTAGCCACCGGAGCCACGCCGTCATCCCGATGAGACAAGCTCGAACAATCGCTGGAGGATTAACCTCGTATTCGCA
AGGACGAGTTACCAAAGGGACAAAATAACTTAACCCCAGCATAAACGATGACAGAAGAAAAAACATGGGTAGGGATCGATGTCAGTAAAGAGGTTCTAGA
TATCTACGTGTTGCCGCAAGGTCTGACCTTGCAACAACCCAACAGCGAGGTTGGCGTTCAATCGCTGATTGAACAATTACATCCTCTCTCACCGAGTTTG
GTGGTGGTGGAATCGACGGGTGGATTAGAGCGCGCGCTCGTATCGGGCTTACAAGCCGCCACAATACCGGTAGCGATCGCCAACCCCCGCAAGGTCAAAG
GGTTTGCGACGGCATTGGGGAAAGCAAAAACGGACAAATTGGACGCACAGGTAATCGCTCAATTCGCACGAGCCGTGCAACCCCAACCCCAACCCGTGGT
TGCCCCCCAAGCCCAACAATTGAGCGACCTAGTACGACGACGACAGCAGTTGGTGGAGATGCAGGTGGCGGAGAAAAACCGCCTCAGTCGTGCGTCTGAG
ACGGTGCAACTAGATATCAAAGCCCATATTGAGGAAATCCAACAGCGTATTGAAAGCCTCAACGAGCAGATTCAGTCCCTCGCCCAACAGCAAGCCGATT
GGCAACGCAAAAATGAAATCTTACAATCCGTTAAAGGGATCGGCAAAGTTTCATCTGCCCTATGTTTGGCGGAATTACCCGAGATGGGAACACTCTCGGA
AAAACAGATTGCCCGGCTGGTCGGGGTCGCTCCTATCAACCACGATAGTGGCCAGCACAAGGGTAAACGCATGATTTCGGGGGGACGCACCTCGGTTCGC
TGTGGCTTGTACATGGCCACATTGGTAGCCATTCGTCATAACCCGGTGATTCGGAAGTTCTACGAACGGTTGTTGACCAATGGCAAGTTGAAAAAGGTGG
CCTTAGTTGCCTGTATGAGGAAATTGCTGGTTATCCTCAATGCCATGATTCGTGATAATAAATGCTGGCAAGCACCCGCTTAGTCCAGTTTTCCGAACAA
TTTCATCGCTGACAAAACGGATGACTGGTGCCGTTACTTTGTCTTGCCTATTTGGGGTACAAAAGATTTTCTTTATTCCCCTTGACTTTTAAGACAATCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
936 bp311 aa2481183+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTEEKTWVGIDVSKEVLDIYVLPQGLTLQQPNSEVGVQSLIEQLHPLSPSLVVVESTGGLERALVSGLQAATIPVAIANPRKVKGFATALGKAKTDKLDA
QVIAQFARAVQPQPQPVVAPQAQQLSDLVRRRQQLVEMQVAEKNRLSRASETVQLDIKAHIEEIQQRIESLNEQIQSLAQQQADWQRKNEILQSVKGIGK
VSSALCLAELPEMGTLSEKQIARLVGVAPINHDSGQHKGKRMISGGRTSVRCGLYMATLVAIRHNPVIRKFYERLLTNGKLKKVALVACMRKLLVILNAM
IRDNKCWQAPA

 

Blast result :
Comments
ISMae40 is 70% aa similar to ISGme8.
References
1] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y., Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K., Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. (2007) DNA Res. 14 (6), 247-256