ISNaoc4
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003929 | ND | Natronococcus occultus | Natronococcus occultus SP4 |
DNA section
IS Length : 1568 bp
Ends
Left end : CTAAAATCAGGCGCTAAGGCCCCGTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGCGGGGATACAGCGCCGTCATCGTCTCA II struct. : Yes
Right end : CCCATTCGGTTCCTGCAAAGCGCGTCATCGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACCGCGTCAGCGGTGAGCGAGTAGGGTGGGGAGGAAGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ACGACAGCCCAA | TTAC | CGTCCGTGGAGG | tcac |
ATGGCGTGACAT | TTAC | TGTCGGTAGTCC | tcac |
DNA sequence
CTAAAATCAGGCGCTAAGGCCCCGTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGCGGGGATACAGCGCCGTCATCGTCTCA
CATACACCCTGCAACGACCGGCCCACAGGCCTACCGACGCGTTTATCAGTTCCGACAATGTATCTACATCGTACATGGAACAGTTCACAATCAACGGCCA
CGAAGTCGTGGACGGCGACGTGAAAGCCACAGGTAACGGCGCTCACGTCTACGTCCCGAAACGCTGGCGTGGCGCGGACGTGAAAGTCGTCCGTACTTCT
GACCCCGACGACGAATAGATGAACTACAACTACAGGTATCAGCTAAACCCGTCTGACGACCTCCGCGAGCGATTCGCATGGACTGTCGATACCTGTAGGC
AGGTCTACAACCATTTCCTCCACCGCCTCAACCGCCACGACGATACGTCGTCGTCGTACTCCGAGCAGAAGCGTCTGCCGGACCTGAAAGACTGGTGGAA
TGACCTGCGAGACGTTCACTCGAAGGTGTTGCAGAAAGTCGTTCAGCGGTTGTACGACAACCTCTCGACGCTCAACAGCCGGAAGCAGAACGGCTACAGC
GTCGGGGAGTTGAAGTGGAAAGCACCGGGCGAGTACCAATCGTTCACCTACAGCCAGTCCGGCTTCAAACTCAAAAACACGAGTGGTCGGACCCGACTGT
GGCTCTCGAAGATTGGTGACATTCCCATTACTTTCCACCGCGACCTGCCCGACGACGCCACCATCAAGACCGTCACTGTCAAACGCGAACCCACCGGCAA
GTGGTACGCCATCCTCGGCGTCGAAACCCCCGACGACCCACCCGAGAAGCCCGACGAGGTGACTGACGCTGTTGGTATCGACGTGGGTATCCTAAAATAC
GTCCACGACAGCGACGGGACCGCCGTCGAGTCGCCTGACCTTTCCGACGAACGCGAGCGGTTAGAACGCGCCCAACGTAACCTCTCGCGGAAGGAACACG
GCTCGAACAATTGGGAGGAACAGCGCAAGACGGTCGCTCGACGCCACGCTGACCTGAAGCGCAAGCGTCGAGACTTCTTGCACAAACTCTCGGCGTACTA
CGCCCGCGAGTACGACCTTGTCGCGGTCGAGGACTTGGATACGAAAGGACTGGTTGAGCTTCCGGGCAACTCTCGGAGCCGCGCCGGGGCCTCGTGGGGG
ATGTTCCTGCGAATGCTCGAATACAAGTGCGAGCGGGAAGGAACGTACTTCGTCGCCGTGGACCCCCGAGGCACGACCAAAGAGTGCGCGTCATGTGGCG
TCGAGACGGACAAGCCGTTGTGGGTACGCAAGCATTCGTGTCCGTCGTGTGGGTTCGAGGCAGACAGAGACGCGAATGCGTCGTGGAACATCCTTTCTCG
CGGTCTCGAACAAGTAGGGGCGGGCTGTCCCGAATCAACGCCTGTGGAGACTGCGCTCCCTACGGGAACCCATTCGGTTCCTGCAAAGCGCGTCATCGAA
GCAGGAAGCCCCACCCTCAAGGAGCGAACCGCGTCAGCGGTGAGCGAGTAGGGTGGGGAGGAAGTCAC
CATACACCCTGCAACGACCGGCCCACAGGCCTACCGACGCGTTTATCAGTTCCGACAATGTATCTACATCGTACATGGAACAGTTCACAATCAACGGCCA
CGAAGTCGTGGACGGCGACGTGAAAGCCACAGGTAACGGCGCTCACGTCTACGTCCCGAAACGCTGGCGTGGCGCGGACGTGAAAGTCGTCCGTACTTCT
GACCCCGACGACGAATAGATGAACTACAACTACAGGTATCAGCTAAACCCGTCTGACGACCTCCGCGAGCGATTCGCATGGACTGTCGATACCTGTAGGC
AGGTCTACAACCATTTCCTCCACCGCCTCAACCGCCACGACGATACGTCGTCGTCGTACTCCGAGCAGAAGCGTCTGCCGGACCTGAAAGACTGGTGGAA
TGACCTGCGAGACGTTCACTCGAAGGTGTTGCAGAAAGTCGTTCAGCGGTTGTACGACAACCTCTCGACGCTCAACAGCCGGAAGCAGAACGGCTACAGC
GTCGGGGAGTTGAAGTGGAAAGCACCGGGCGAGTACCAATCGTTCACCTACAGCCAGTCCGGCTTCAAACTCAAAAACACGAGTGGTCGGACCCGACTGT
GGCTCTCGAAGATTGGTGACATTCCCATTACTTTCCACCGCGACCTGCCCGACGACGCCACCATCAAGACCGTCACTGTCAAACGCGAACCCACCGGCAA
GTGGTACGCCATCCTCGGCGTCGAAACCCCCGACGACCCACCCGAGAAGCCCGACGAGGTGACTGACGCTGTTGGTATCGACGTGGGTATCCTAAAATAC
GTCCACGACAGCGACGGGACCGCCGTCGAGTCGCCTGACCTTTCCGACGAACGCGAGCGGTTAGAACGCGCCCAACGTAACCTCTCGCGGAAGGAACACG
GCTCGAACAATTGGGAGGAACAGCGCAAGACGGTCGCTCGACGCCACGCTGACCTGAAGCGCAAGCGTCGAGACTTCTTGCACAAACTCTCGGCGTACTA
CGCCCGCGAGTACGACCTTGTCGCGGTCGAGGACTTGGATACGAAAGGACTGGTTGAGCTTCCGGGCAACTCTCGGAGCCGCGCCGGGGCCTCGTGGGGG
ATGTTCCTGCGAATGCTCGAATACAAGTGCGAGCGGGAAGGAACGTACTTCGTCGCCGTGGACCCCCGAGGCACGACCAAAGAGTGCGCGTCATGTGGCG
TCGAGACGGACAAGCCGTTGTGGGTACGCAAGCATTCGTGTCCGTCGTGTGGGTTCGAGGCAGACAGAGACGCGAATGCGTCGTGGAACATCCTTTCTCG
CGGTCTCGAACAAGTAGGGGCGGGCTGTCCCGAATCAACGCCTGTGGAGACTGCGCTCCCTACGGGAACCCATTCGGTTCCTGCAAAGCGCGTCATCGAA
GCAGGAAGCCCCACCCTCAAGGAGCGAACCGCGTCAGCGGTGAGCGAGTAGGGTGGGGAGGAAGTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
144 bp | 47 aa | 175 | 318 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MEQFTINGHEVVDGDVKATGNGAHVYVPKRWRGADVKVVRTSDPDDE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1233 bp | 410 aa | 319 | 1551 | + | No |
AG : TnpB
ORF sequence :
MNYNYRYQLNPSDDLRERFAWTVDTCRQVYNHFLHRLNRHDDTSSSYSEQKRLPDLKDWWNDLRDVHSKVLQKVVQRLYDNLSTLNSRKQNGYSVGELKW
KAPGEYQSFTYSQSGFKLKNTSGRTRLWLSKIGDIPITFHRDLPDDATIKTVTVKREPTGKWYAILGVETPDDPPEKPDEVTDAVGIDVGILKYVHDSDG
TAVESPDLSDERERLERAQRNLSRKEHGSNNWEEQRKTVARRHADLKRKRRDFLHKLSAYYAREYDLVAVEDLDTKGLVELPGNSRSRAGASWGMFLRML
EYKCEREGTYFVAVDPRGTTKECASCGVETDKPLWVRKHSCPSCGFEADRDANASWNILSRGLEQVGAGCPESTPVETALPTGTHSVPAKRVIEAGSPTL
KERTASAVSE
KAPGEYQSFTYSQSGFKLKNTSGRTRLWLSKIGDIPITFHRDLPDDATIKTVTVKREPTGKWYAILGVETPDDPPEKPDEVTDAVGIDVGILKYVHDSDG
TAVESPDLSDERERLERAQRNLSRKEHGSNNWEEQRKTVARRHADLKRKRRDFLHKLSAYYAREYDLVAVEDLDTKGLVELPGNSRSRAGASWGMFLRML
EYKCEREGTYFVAVDPRGTTKECASCGVETDKPLWVRKHSCPSCGFEADRDANASWNILSRGLEQVGAGCPESTPVETALPTGTHSVPAKRVIEAGSPTL
KERTASAVSE
Blast result :
Comments
ISNaoc4 is 84% (TnpB) aa similar to ISNma17. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer, F. (2015) Direct submission
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J., Klenk,H.-P. and Klenk,H.-P. (2012) Direct submission GenBank.
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J., Klenk,H.-P. and Klenk,H.-P. (2012) Direct submission GenBank.