ISNaoc4

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003929 ND Natronococcus occultus
Natronococcus occultus SP4
DNA section
IS Length : 1568 bp

Ends


Left end : CTAAAATCAGGCGCTAAGGCCCCGTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGCGGGGATACAGCGCCGTCATCGTCTCA II struct. : Yes
Right end : CCCATTCGGTTCCTGCAAAGCGCGTCATCGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACCGCGTCAGCGGTGAGCGAGTAGGGTGGGGAGGAAGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ACGACAGCCCAATTACCGTCCGTGGAGGtcac
ATGGCGTGACATTTACTGTCGGTAGTCCtcac

DNA sequence

CTAAAATCAGGCGCTAAGGCCCCGTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGCGGGGATACAGCGCCGTCATCGTCTCA
CATACACCCTGCAACGACCGGCCCACAGGCCTACCGACGCGTTTATCAGTTCCGACAATGTATCTACATCGTACATGGAACAGTTCACAATCAACGGCCA
CGAAGTCGTGGACGGCGACGTGAAAGCCACAGGTAACGGCGCTCACGTCTACGTCCCGAAACGCTGGCGTGGCGCGGACGTGAAAGTCGTCCGTACTTCT
GACCCCGACGACGAATAGATGAACTACAACTACAGGTATCAGCTAAACCCGTCTGACGACCTCCGCGAGCGATTCGCATGGACTGTCGATACCTGTAGGC
AGGTCTACAACCATTTCCTCCACCGCCTCAACCGCCACGACGATACGTCGTCGTCGTACTCCGAGCAGAAGCGTCTGCCGGACCTGAAAGACTGGTGGAA
TGACCTGCGAGACGTTCACTCGAAGGTGTTGCAGAAAGTCGTTCAGCGGTTGTACGACAACCTCTCGACGCTCAACAGCCGGAAGCAGAACGGCTACAGC
GTCGGGGAGTTGAAGTGGAAAGCACCGGGCGAGTACCAATCGTTCACCTACAGCCAGTCCGGCTTCAAACTCAAAAACACGAGTGGTCGGACCCGACTGT
GGCTCTCGAAGATTGGTGACATTCCCATTACTTTCCACCGCGACCTGCCCGACGACGCCACCATCAAGACCGTCACTGTCAAACGCGAACCCACCGGCAA
GTGGTACGCCATCCTCGGCGTCGAAACCCCCGACGACCCACCCGAGAAGCCCGACGAGGTGACTGACGCTGTTGGTATCGACGTGGGTATCCTAAAATAC
GTCCACGACAGCGACGGGACCGCCGTCGAGTCGCCTGACCTTTCCGACGAACGCGAGCGGTTAGAACGCGCCCAACGTAACCTCTCGCGGAAGGAACACG
GCTCGAACAATTGGGAGGAACAGCGCAAGACGGTCGCTCGACGCCACGCTGACCTGAAGCGCAAGCGTCGAGACTTCTTGCACAAACTCTCGGCGTACTA
CGCCCGCGAGTACGACCTTGTCGCGGTCGAGGACTTGGATACGAAAGGACTGGTTGAGCTTCCGGGCAACTCTCGGAGCCGCGCCGGGGCCTCGTGGGGG
ATGTTCCTGCGAATGCTCGAATACAAGTGCGAGCGGGAAGGAACGTACTTCGTCGCCGTGGACCCCCGAGGCACGACCAAAGAGTGCGCGTCATGTGGCG
TCGAGACGGACAAGCCGTTGTGGGTACGCAAGCATTCGTGTCCGTCGTGTGGGTTCGAGGCAGACAGAGACGCGAATGCGTCGTGGAACATCCTTTCTCG
CGGTCTCGAACAAGTAGGGGCGGGCTGTCCCGAATCAACGCCTGTGGAGACTGCGCTCCCTACGGGAACCCATTCGGTTCCTGCAAAGCGCGTCATCGAA
GCAGGAAGCCCCACCCTCAAGGAGCGAACCGCGTCAGCGGTGAGCGAGTAGGGTGGGGAGGAAGTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
144 bp47 aa175318+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MEQFTINGHEVVDGDVKATGNGAHVYVPKRWRGADVKVVRTSDPDDE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1233 bp410 aa3191551+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MNYNYRYQLNPSDDLRERFAWTVDTCRQVYNHFLHRLNRHDDTSSSYSEQKRLPDLKDWWNDLRDVHSKVLQKVVQRLYDNLSTLNSRKQNGYSVGELKW
KAPGEYQSFTYSQSGFKLKNTSGRTRLWLSKIGDIPITFHRDLPDDATIKTVTVKREPTGKWYAILGVETPDDPPEKPDEVTDAVGIDVGILKYVHDSDG
TAVESPDLSDERERLERAQRNLSRKEHGSNNWEEQRKTVARRHADLKRKRRDFLHKLSAYYAREYDLVAVEDLDTKGLVELPGNSRSRAGASWGMFLRML
EYKCEREGTYFVAVDPRGTTKECASCGVETDKPLWVRKHSCPSCGFEADRDANASWNILSRGLEQVGAGCPESTPVETALPTGTHSVPAKRVIEAGSPTL
KERTASAVSE

 

Blast result :
Comments
ISNaoc4 is 84% (TnpB) aa similar to ISNma17. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer, F. (2015) Direct submission
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J., Klenk,H.-P. and Klenk,H.-P. (2012) Direct submission GenBank.