ISRsp13

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FO082821 ND Rhizhobium sp.
Rhizhobium sp. str. NT-26
DNA section
IS Length : 1353 bp

Ends


IR Length : 16/20

IRL : GGCCGCTGAAAAACTCCTGCCTCGACGCCTGTCGCGGAACATGATTCACC
IRR : GGCCGCTGAAAAGAGCTGCTGTGAGGAACGGTTTCTCTCTACGCGGATGC

Insertion site


Left flankDirect repeatRight flankDR Length
TGCTCTTTAACAGGTTAAGCAT0

DNA sequence

GGCCGCTGAAAAACTCCTGCCTCGACGCCTGTCGCGGAACATGATTCACCGTCGCCACTACGATGGCGACGGAGTATGGGATGCGTGGATCAGATCAGGT
GACGGGCTCGCTGTTCAGCTACGTCGATCTCGAGGAGCGTATTCCGGCGCGACACTCGCTTCGCAAGATCAGGGCCGTCGTCAACGATGCGCTGCGCTCC
TTGGATGCCGAGTTCGACCGGCTCTACGCGCGGGAAGGCCGCCCCTCCATCGCGCCGGAACGATTGATCCGGGCCAGCCTGCTGCAGATCCTCTACTCGA
TCCGGTCCGAGCGGCAACTCATGGAGCAGATGGATTGCAACCTGCTGTTCCGCTGGTTCGTGGGCCTCGGGATCGACGATGCCGTCTGGGTCCCGGCCGT
GTTCACGAAGAACCGCGACCGGCTGCTGACCACGGACATGTTGCGCCGGATCATGGCCGCCATCCTGGCGCATCGCGAGGTGGCACCGCTGCTGTCGGAA
GATCATTTCTCGGTCGACGGCACCCTGGTGAAGGCCTGGGCGTCGATGAAGAGTTTCCAGCCGAAGGAAAGGGCTGCGTCCGACGGGGACGAGGGTCCCG
GCGATCCGCCAGATTCCAGTGTGCCGCCCGCATCCTCCTCTGACCAGTCCACCGCCGAGCCCGATCCAATGACCCGCCCCACACGCCGCAACCGCAACGC
CGAAGTCGACTTCCGTGGCGAACGCCGGTCGAACGCGACCCATGCTTCGATGACCGATCCGGAGGCACGGCTGTTCAAGAAGTCCCCCGGCGCCGGCGCT
ATGCTGTGCTTCATGGGGCATAGCCTGATGGAGAACCGCTCCGGGCTGATCGTGCAGGCCGACCTGACGCGGGCGGACGGCCACGCCGAGCGGCGTGCTG
CCATCGACATGCTTCACCGCCACTCGCCCGGTTCGACGCGGCGCCTGACCCTGGCCGCAGACCGCGGTTACGACAGCGCGGACTTCGTCGCCGAACTGCG
CCAGATGGTGGTCACGCCGCATGTCGCCCAGAAGTCTCGACACTCCGCCATCGACGGCAGAACCACCCGGCACCCTGGCTACGCCAAGTCACAGCGGCGC
CGGAAGAAGATCGAGGAACCTTTCGGCTGGGTCAAAACCGTCGGCGGCATGACGCAGACCCTGTATCGCGGCATCGAGCGCGTGCGGGCCCGCTTCACGC
TGGCGATGGCGGCGTGCAACCTCGCGAGGCTCCCGAAACTGCTCGCCGCCTGAGCCGGAAAGCAGGATACTCGGACTGCCTGCCCATGATCCAGCCACAC
CCAGCATCCGCGTAGAGAGAAACCGTTCCTCACAGCAGCTCTTTTCAGCGGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1173 bp390 aa811253+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGSDQVTGSLFSYVDLEERIPARHSLRKIRAVVNDALRSLDAEFDRLYAREGRPSIAPERLIRASLLQILYSIRSERQLMEQMDCNLLFRWFVGLGIDD
AVWVPAVFTKNRDRLLTTDMLRRIMAAILAHREVAPLLSEDHFSVDGTLVKAWASMKSFQPKERAASDGDEGPGDPPDSSVPPASSSDQSTAEPDPMTRP
TRRNRNAEVDFRGERRSNATHASMTDPEARLFKKSPGAGAMLCFMGHSLMENRSGLIVQADLTRADGHAERRAAIDMLHRHSPGSTRRLTLAADRGYDSA
DFVAELRQMVVTPHVAQKSRHSAIDGRTTRHPGYAKSQRRRKKIEEPFGWVKTVGGMTQTLYRGIERVRARFTLAMAACNLARLPKLLAA

 

Blast result :
Comments
ISRsp13 is 93% aa similar to ISRssp11.
References
1] Andres,J., Arsene-Ploetze,F., Barbe,V., Brochier-Armanet,C., Cleiss-Arnold,J., Coppee,J.Y., Dillies,M.A., Geist,L., Joublin,A., Koechler,S., Lassalle,F., Marchal,M., Medigue,C., Muller,D., Nesme,X., Plewniak,F., Proux,C., Ramirez-Bahena,M.H., Schenowitz,C., Sismeiro,O., Vallenet,D., Santini,J.M. and Bertin,P.N. (2013) Genome Biol Evol 5 (5), 934-953