ISRsp13
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FO082821 | ND | Rhizhobium sp. | Rhizhobium sp. str. NT-26 |
DNA section
IS Length : 1353 bp
Ends
IR Length : 16/20
IRL : GGCCGCTGAAAAACTCCTGCCTCGACGCCTGTCGCGGAACATGATTCACC
IRR : GGCCGCTGAAAAGAGCTGCTGTGAGGAACGGTTTCTCTCTACGCGGATGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCTCTTTAACA | GGTTAAGCAT | 0 |
DNA sequence
GGCCGCTGAAAAACTCCTGCCTCGACGCCTGTCGCGGAACATGATTCACCGTCGCCACTACGATGGCGACGGAGTATGGGATGCGTGGATCAGATCAGGT
GACGGGCTCGCTGTTCAGCTACGTCGATCTCGAGGAGCGTATTCCGGCGCGACACTCGCTTCGCAAGATCAGGGCCGTCGTCAACGATGCGCTGCGCTCC
TTGGATGCCGAGTTCGACCGGCTCTACGCGCGGGAAGGCCGCCCCTCCATCGCGCCGGAACGATTGATCCGGGCCAGCCTGCTGCAGATCCTCTACTCGA
TCCGGTCCGAGCGGCAACTCATGGAGCAGATGGATTGCAACCTGCTGTTCCGCTGGTTCGTGGGCCTCGGGATCGACGATGCCGTCTGGGTCCCGGCCGT
GTTCACGAAGAACCGCGACCGGCTGCTGACCACGGACATGTTGCGCCGGATCATGGCCGCCATCCTGGCGCATCGCGAGGTGGCACCGCTGCTGTCGGAA
GATCATTTCTCGGTCGACGGCACCCTGGTGAAGGCCTGGGCGTCGATGAAGAGTTTCCAGCCGAAGGAAAGGGCTGCGTCCGACGGGGACGAGGGTCCCG
GCGATCCGCCAGATTCCAGTGTGCCGCCCGCATCCTCCTCTGACCAGTCCACCGCCGAGCCCGATCCAATGACCCGCCCCACACGCCGCAACCGCAACGC
CGAAGTCGACTTCCGTGGCGAACGCCGGTCGAACGCGACCCATGCTTCGATGACCGATCCGGAGGCACGGCTGTTCAAGAAGTCCCCCGGCGCCGGCGCT
ATGCTGTGCTTCATGGGGCATAGCCTGATGGAGAACCGCTCCGGGCTGATCGTGCAGGCCGACCTGACGCGGGCGGACGGCCACGCCGAGCGGCGTGCTG
CCATCGACATGCTTCACCGCCACTCGCCCGGTTCGACGCGGCGCCTGACCCTGGCCGCAGACCGCGGTTACGACAGCGCGGACTTCGTCGCCGAACTGCG
CCAGATGGTGGTCACGCCGCATGTCGCCCAGAAGTCTCGACACTCCGCCATCGACGGCAGAACCACCCGGCACCCTGGCTACGCCAAGTCACAGCGGCGC
CGGAAGAAGATCGAGGAACCTTTCGGCTGGGTCAAAACCGTCGGCGGCATGACGCAGACCCTGTATCGCGGCATCGAGCGCGTGCGGGCCCGCTTCACGC
TGGCGATGGCGGCGTGCAACCTCGCGAGGCTCCCGAAACTGCTCGCCGCCTGAGCCGGAAAGCAGGATACTCGGACTGCCTGCCCATGATCCAGCCACAC
CCAGCATCCGCGTAGAGAGAAACCGTTCCTCACAGCAGCTCTTTTCAGCGGCC
GACGGGCTCGCTGTTCAGCTACGTCGATCTCGAGGAGCGTATTCCGGCGCGACACTCGCTTCGCAAGATCAGGGCCGTCGTCAACGATGCGCTGCGCTCC
TTGGATGCCGAGTTCGACCGGCTCTACGCGCGGGAAGGCCGCCCCTCCATCGCGCCGGAACGATTGATCCGGGCCAGCCTGCTGCAGATCCTCTACTCGA
TCCGGTCCGAGCGGCAACTCATGGAGCAGATGGATTGCAACCTGCTGTTCCGCTGGTTCGTGGGCCTCGGGATCGACGATGCCGTCTGGGTCCCGGCCGT
GTTCACGAAGAACCGCGACCGGCTGCTGACCACGGACATGTTGCGCCGGATCATGGCCGCCATCCTGGCGCATCGCGAGGTGGCACCGCTGCTGTCGGAA
GATCATTTCTCGGTCGACGGCACCCTGGTGAAGGCCTGGGCGTCGATGAAGAGTTTCCAGCCGAAGGAAAGGGCTGCGTCCGACGGGGACGAGGGTCCCG
GCGATCCGCCAGATTCCAGTGTGCCGCCCGCATCCTCCTCTGACCAGTCCACCGCCGAGCCCGATCCAATGACCCGCCCCACACGCCGCAACCGCAACGC
CGAAGTCGACTTCCGTGGCGAACGCCGGTCGAACGCGACCCATGCTTCGATGACCGATCCGGAGGCACGGCTGTTCAAGAAGTCCCCCGGCGCCGGCGCT
ATGCTGTGCTTCATGGGGCATAGCCTGATGGAGAACCGCTCCGGGCTGATCGTGCAGGCCGACCTGACGCGGGCGGACGGCCACGCCGAGCGGCGTGCTG
CCATCGACATGCTTCACCGCCACTCGCCCGGTTCGACGCGGCGCCTGACCCTGGCCGCAGACCGCGGTTACGACAGCGCGGACTTCGTCGCCGAACTGCG
CCAGATGGTGGTCACGCCGCATGTCGCCCAGAAGTCTCGACACTCCGCCATCGACGGCAGAACCACCCGGCACCCTGGCTACGCCAAGTCACAGCGGCGC
CGGAAGAAGATCGAGGAACCTTTCGGCTGGGTCAAAACCGTCGGCGGCATGACGCAGACCCTGTATCGCGGCATCGAGCGCGTGCGGGCCCGCTTCACGC
TGGCGATGGCGGCGTGCAACCTCGCGAGGCTCCCGAAACTGCTCGCCGCCTGAGCCGGAAAGCAGGATACTCGGACTGCCTGCCCATGATCCAGCCACAC
CCAGCATCCGCGTAGAGAGAAACCGTTCCTCACAGCAGCTCTTTTCAGCGGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1173 bp | 390 aa | 81 | 1253 | + | No |
Chemistry : DDE
ORF sequence :
MRGSDQVTGSLFSYVDLEERIPARHSLRKIRAVVNDALRSLDAEFDRLYAREGRPSIAPERLIRASLLQILYSIRSERQLMEQMDCNLLFRWFVGLGIDD
AVWVPAVFTKNRDRLLTTDMLRRIMAAILAHREVAPLLSEDHFSVDGTLVKAWASMKSFQPKERAASDGDEGPGDPPDSSVPPASSSDQSTAEPDPMTRP
TRRNRNAEVDFRGERRSNATHASMTDPEARLFKKSPGAGAMLCFMGHSLMENRSGLIVQADLTRADGHAERRAAIDMLHRHSPGSTRRLTLAADRGYDSA
DFVAELRQMVVTPHVAQKSRHSAIDGRTTRHPGYAKSQRRRKKIEEPFGWVKTVGGMTQTLYRGIERVRARFTLAMAACNLARLPKLLAA
AVWVPAVFTKNRDRLLTTDMLRRIMAAILAHREVAPLLSEDHFSVDGTLVKAWASMKSFQPKERAASDGDEGPGDPPDSSVPPASSSDQSTAEPDPMTRP
TRRNRNAEVDFRGERRSNATHASMTDPEARLFKKSPGAGAMLCFMGHSLMENRSGLIVQADLTRADGHAERRAAIDMLHRHSPGSTRRLTLAADRGYDSA
DFVAELRQMVVTPHVAQKSRHSAIDGRTTRHPGYAKSQRRRKKIEEPFGWVKTVGGMTQTLYRGIERVRARFTLAMAACNLARLPKLLAA
Blast result :
Comments
ISRsp13 is 93% aa similar to ISRssp11.
References
1] Andres,J., Arsene-Ploetze,F., Barbe,V., Brochier-Armanet,C., Cleiss-Arnold,J., Coppee,J.Y., Dillies,M.A., Geist,L., Joublin,A., Koechler,S., Lassalle,F., Marchal,M., Medigue,C., Muller,D., Nesme,X., Plewniak,F., Proux,C., Ramirez-Bahena,M.H., Schenowitz,C., Sismeiro,O., Vallenet,D., Santini,J.M. and Bertin,P.N. (2013) Genome Biol Evol 5 (5), 934-953