ISMno16
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 |
DNA section
IS Length : 1404 bp
Ends
IR Length : 12
IRL : gctgatggTGTGGACGGCCCCCCACGGCATCAGTGTGTGCCAGAATGAGG
IRR : ------taTGTGGACGGCCCGTTCTCGCAAGCGGACAATCCCGGTCCGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGCGTCTTGT | TGGGTCCCGG | 0 | |
| GAGTTCTTAT | TGGGTCCCGG | 0 | |
| ACGTCCTTGT | TGGGTCCCGG | 0 | |
| GGATTCCTGT | TGGGTCCCGG | 0 | |
| TCTGCCTTGT | TGGGTCCCGG | 0 |
DNA sequence
GCTGATGGTGTGGACGGCCCCCCACGGCATCAGTGTGTGCCAGAATGAGGTCGTCAGGATCTCATCCGAGGAGGCCGTCCATGAGCGAGATTATCCGCAT
TGGGCTGGATACGTCCAAGTCTGTTTTCCAGCTGCACGGGGTCGATGCGGCCGAGCGGCCGGTGCTGAAGCTGAAGCTGTCGCGCAGCAAGATGCTGGCC
TTCTTCGCCCAGCAGCCGCCCTGCCTGGTGGCGCTGGAAGCCTGCGGGGCCTCGCATCACTGGGCCCGCACCCTGGCCGGGCTGGGCCACACGGTGCGCC
TGATCGCGCCCCAGCACGTCAAGCCCTACGTGCCCGGCTCCAAGACCGACGCGGCCGATGCGGCGGGCCTGTGCGAGGCGGTCAGCCGGCCGCAGATGCG
CTTCGTGCCGGTCAAGACCGCCGAGCAGCAGGCGGCGCTGATGCTCACGGGCCTGCGCGAGCAATGGCTCAAGCGGCGCACCCAGGTCAGCAACAGCCTG
CGCGGGTATGCGGCCGAGTTCGGGCTGGCGGCGCCTCAGGGGCTGGCCCGTCTCGCGGAACTGGTCGCGCGCCTGGCCGAGGACCCGCGCGTGCCGGCTC
TGGCCCGCCCGCTGTTTGCGGCGCTGTGGGCCGAGTACCAGGAGATCGAGGCCCGGGTGCAGGAGGCCGACCGCCAGCTCAAAGTGTGGCAGCGGGGCAA
CGCCAGCTGCCGGCGGCTGAGCGCCGTGCCGGGGATCGGTCCGGTGGGCGCGGCGCTGCTGGTGCTGAAGACGCCGGCCCCCCAGGCGTTCCGCAGCGGG
CGGGACTTTGCGGCCTGGCTGGGGCTGACGCCCAAGGATCACGCGACCGCGGGCAAGCCGCGGCTGGGCGGGATCACGCGGGCGGGCGACGAGCAACTGC
GCAGCGTGCTGGTGGCCGGCGCGATGGCGGTGCTGCGCCAGCTCAAGCCGGAGAGCGCGGGGCTGGCGGGCTGGCTGACGCGGCTGGTGGCGCGCAAGGC
GCGGCGGCTGGTGGCGGTGGCGCTGGCCAACAAGCTGGCGCGGATCGCCTGGCGGCTGTTGGTGAGCGGGGCGAGCTACGACCCGGCCCGGGCCGGCCCG
CCGATGGGAGGGGCGGAGCCGGCCCGGGCCTGACCGGGCCGGTGGCGCGATCAGGAGGGAACCGGGGGCCGGTGAGGCGCCCATGAGCTTGCAAGCGGGA
GATGGTTGGTCAGCTCGGCTGTCGTGACATGCCTCACTCCGGGGGATCCAAGGGCCGTTCGAGGTCACTGTGCTGATTGGGCGGCGTGTCGCGCACCACC
ACCTGGGCCGCGGTCGGCAGAGCCGCACCCGAAGGCCGAACATATGGATGCAACGGCAGAGCCGGACCGGGATTGTCCGCTTGCGAGAACGGGCCGTCCA
CATA
TGGGCTGGATACGTCCAAGTCTGTTTTCCAGCTGCACGGGGTCGATGCGGCCGAGCGGCCGGTGCTGAAGCTGAAGCTGTCGCGCAGCAAGATGCTGGCC
TTCTTCGCCCAGCAGCCGCCCTGCCTGGTGGCGCTGGAAGCCTGCGGGGCCTCGCATCACTGGGCCCGCACCCTGGCCGGGCTGGGCCACACGGTGCGCC
TGATCGCGCCCCAGCACGTCAAGCCCTACGTGCCCGGCTCCAAGACCGACGCGGCCGATGCGGCGGGCCTGTGCGAGGCGGTCAGCCGGCCGCAGATGCG
CTTCGTGCCGGTCAAGACCGCCGAGCAGCAGGCGGCGCTGATGCTCACGGGCCTGCGCGAGCAATGGCTCAAGCGGCGCACCCAGGTCAGCAACAGCCTG
CGCGGGTATGCGGCCGAGTTCGGGCTGGCGGCGCCTCAGGGGCTGGCCCGTCTCGCGGAACTGGTCGCGCGCCTGGCCGAGGACCCGCGCGTGCCGGCTC
TGGCCCGCCCGCTGTTTGCGGCGCTGTGGGCCGAGTACCAGGAGATCGAGGCCCGGGTGCAGGAGGCCGACCGCCAGCTCAAAGTGTGGCAGCGGGGCAA
CGCCAGCTGCCGGCGGCTGAGCGCCGTGCCGGGGATCGGTCCGGTGGGCGCGGCGCTGCTGGTGCTGAAGACGCCGGCCCCCCAGGCGTTCCGCAGCGGG
CGGGACTTTGCGGCCTGGCTGGGGCTGACGCCCAAGGATCACGCGACCGCGGGCAAGCCGCGGCTGGGCGGGATCACGCGGGCGGGCGACGAGCAACTGC
GCAGCGTGCTGGTGGCCGGCGCGATGGCGGTGCTGCGCCAGCTCAAGCCGGAGAGCGCGGGGCTGGCGGGCTGGCTGACGCGGCTGGTGGCGCGCAAGGC
GCGGCGGCTGGTGGCGGTGGCGCTGGCCAACAAGCTGGCGCGGATCGCCTGGCGGCTGTTGGTGAGCGGGGCGAGCTACGACCCGGCCCGGGCCGGCCCG
CCGATGGGAGGGGCGGAGCCGGCCCGGGCCTGACCGGGCCGGTGGCGCGATCAGGAGGGAACCGGGGGCCGGTGAGGCGCCCATGAGCTTGCAAGCGGGA
GATGGTTGGTCAGCTCGGCTGTCGTGACATGCCTCACTCCGGGGGATCCAAGGGCCGTTCGAGGTCACTGTGCTGATTGGGCGGCGTGTCGCGCACCACC
ACCTGGGCCGCGGTCGGCAGAGCCGCACCCGAAGGCCGAACATATGGATGCAACGGCAGAGCCGGACCGGGATTGTCCGCTTGCGAGAACGGGCCGTCCA
CATA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1053 bp | 350 aa | 81 | 1133 | + | No |
Chemistry : DEDD
ORF sequence :
MSEIIRIGLDTSKSVFQLHGVDAAERPVLKLKLSRSKMLAFFAQQPPCLVALEACGASHHWARTLAGLGHTVRLIAPQHVKPYVPGSKTDAADAAGLCEA
VSRPQMRFVPVKTAEQQAALMLTGLREQWLKRRTQVSNSLRGYAAEFGLAAPQGLARLAELVARLAEDPRVPALARPLFAALWAEYQEIEARVQEADRQL
KVWQRGNASCRRLSAVPGIGPVGAALLVLKTPAPQAFRSGRDFAAWLGLTPKDHATAGKPRLGGITRAGDEQLRSVLVAGAMAVLRQLKPESAGLAGWLT
RLVARKARRLVAVALANKLARIAWRLLVSGASYDPARAGPPMGGAEPARA
VSRPQMRFVPVKTAEQQAALMLTGLREQWLKRRTQVSNSLRGYAAEFGLAAPQGLARLAELVARLAEDPRVPALARPLFAALWAEYQEIEARVQEADRQL
KVWQRGNASCRRLSAVPGIGPVGAALLVLKTPAPQAFRSGRDFAAWLGLTPKDHATAGKPRLGGITRAGDEQLRSVLVAGAMAVLRQLKPESAGLAGWLT
RLVARKARRLVAVALANKLARIAWRLLVSGASYDPARAGPPMGGAEPARA
Blast result :
Comments
ISMno16 is 76% aa similar to ISRsp4.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.