ISCaa14

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010830 ND Candidatus Amoebophilus
Candidatus Amoebophilus asiaticus 5a2
DNA section
IS Length : 1256 bp

Ends


Left end : CCTATGTTTGTATAAATGTTGAGTAAGGAAAATCTAAAGAGTAAATTGATTGCAGAAGAAAAGGGTAAAGAGCAAAAATTAAGGCACACATTAGCTCATA
Right end : ACAAGCTCCTTAAACAGGCTTTTGCTATTGTAACAAATCAAACAGTCTACGATGAAAATTATGTGAGCAAACCTTGCTTTTGAACACAGTTCATATGTAA

Insertion site


Left flankDirect repeatRight flankDR Length
TAGCACACATATTTGGTATT0

DNA sequence

CCTATGTTTGTATAAATGTTGAGTAAGGAAAATCTAAAGAGTAAATTGATTGCAGAAGAAAAGGGTAAAGAGCAAAAATTAAGGCACACATTAGCTCATA
AAGGCTGTTGCATATGCTAATTTCTTTACTCAACTGCAAAGACCTTGGACAGTTCATTAGGCTACTGAGCCTGCATGTAGGATTGATAAGGCTTGTGCAG
TTCCTTCTACCTTTTTAGGGTTAGTAGTAAAATTATATAAAATAATATAGCTATGCAAAGTTCAATAAATTATGTAGGGGTAGATATTTCTAAACCCTTC
TTTGATGTTGCTTTACCTAATGGCCAAGCATATACTTACTATAAGTTTGATAATAGACAAGATGGGTTTGAAGCTTTATTAAAAGTGCTTCCTCAAAACA
GTGTGGTAGTCATGGAAGCCTCTGGACCACCATACTATATGAAGTTAGCAGCTTATCTCACCCAGCAAGGGATAGGAGTGAGTGTTATTAACCCACTAGT
AATCCGCAGGTTTTGTCAGATGCGTATGTCAAGGGCAAAAACAGATAAAAAGGATGCAAAAATGATTGCCGAATATGGTCAGATGGAAAAGCCTGCCCTC
TGGCAGCCACCGCAGAAATATGTTGTAGCCTTACAGCAGATGCAAGCTTTACTGGACAATCTACATAAAGAACATACAGCACTCAGTAACCAGCATGAAG
GTTTTAGCAGCAGTGGTATGCTAGGTACAAAGCTAGAACAAATTATTGAACAAGAGCTCAAACATAAGCAAGAGCTCATTGATAAGCTTACTAAACAGAT
GGAAGAGCTGGCCAGAAAGCATTATGGTTCTATGTTAGCTGATTTAGAAACCATACCAGGATTAGGCAGAAAGACATCTATCCTGTTAATAGTACTGATC
GGAGGATTTAACCGCTTTAGTAATTATAGAAAACTGGGTTCTTATATAGAATTAAGCCCCCGGATATTTGAATCTGGAACAAGCGTAAAAGGCAAAGCAA
GGATAACTAAGATGGGTATGTCTCGAATAAGAGCGATGTTATATGTCTGTGCATGGAGTGCTAAACGTTACAACAAAGCATGCAGGGAGCTTTACCAACG
GTTACTTGCCAAAGGGAAAGCTAAAAAACAGGCGTTGATAGCTGTCGTTAACAAGCTCCTTAAACAGGCTTTTGCTATTGTAACAAATCAAACAGTCTAC
GATGAAAATTATGTGAGCAAACCTTGCTTTTGAACACAGTTCATATGTAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa2531233+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MQSSINYVGVDISKPFFDVALPNGQAYTYYKFDNRQDGFEALLKVLPQNSVVVMEASGPPYYMKLAAYLTQQGIGVSVINPLVIRRFCQMRMSRAKTDKK
DAKMIAEYGQMEKPALWQPPQKYVVALQQMQALLDNLHKEHTALSNQHEGFSSSGMLGTKLEQIIEQELKHKQELIDKLTKQMEELARKHYGSMLADLET
IPGLGRKTSILLIVLIGGFNRFSNYRKLGSYIELSPRIFESGTSVKGKARITKMGMSRIRAMLYVCAWSAKRYNKACRELYQRLLAKGKAKKQALIAVVN
KLLKQAFAIVTNQTVYDENYVSKPCF

 

Blast result :
Comments
ISCaa14 is present in two copies in the Candidatus Amoebophilus asiaticus 5a2 genome.
ISCaa14 is 56% aa similar to ISOt5.
References
1] Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T, Horn M. (2010) J Bacteriol., 192(4):1045-1057.