ISRel7
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007761 | ND | Rhizobium etli | Rhizobium etli CFN 42 |
DNA section
IS Length : 1342 bp
Ends
IR Length : 13
IRL : gatgtggTGGACGGCCTCCGCACCCGGCATCGCAATGTGCCAAAGTGTGG
IRR : ----gtaTGGACGGCCTCCGTGGCAAGGGGCAGTTAGTGTTTCTGGCAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGGTGACCT | ATGCCACTGA | 0 |
DNA sequence
GATGTGGTGGACGGCCTCCGCACCCGGCATCGCAATGTGCCAAAGTGTGGCTGTCGAAAGTCACATAAGGGAGAGCCGTCCATGGAGAAGATTACCACAA
TTGGTCTGGATATCGCCAAGCATGTATTTCAGGTTCACGGGATCAATGGTGCCGGCGCGACGGTGAACCGCCGCAAGCTGCGCCGCGACGATGTCGTTGG
ATTCTTCAAGGCATTGCCGCCATGCCTGATCGGAATCGAGGCATGCGCGACTGGACACCACTGGGCTCGGGTTCTTATGGCGCTGGGTCACGAGGTTCGG
CTGATGCCGGCGTCTTACGTCAAGCCATATGTGAAGCGGCAGAAGAATGACGCGACGGATGCCGAGGCGATTTGCGAGGCGGTGACGCGGCCGACGATGC
GCTTCGTTCCAGTGAAAAGCGAGGAGCAACAGGGTGTGCTGATGCGGCATCGGGTCCGCGAGCTTTTGATCCGGCAGCGGACAATGCTGGTGAACGCCTT
GCGCGGCCACTTGGCGGAGTTCGGCATCGTAACGCGACAGGGCATTGCCGGCGTCGGAATGCTGATCGCGTTGGTCGACGACGATGATCACGATCTAATC
CCGCCGCTTGCGCGGTCCGCGCTTCTTCCCCTAATCGGGCAGTTGCGGGAGGTGCACGAGAAGGTCAGAGAGCTGGATCGCCAAATTCATGCTTGGCATC
GCTCGAACGAACTGAGCCGCCGCCTTGAGACGATCCCTGGAATTGGCCCGATCACTGCCAGCGCAATTGCCGCGACGGTGACCGACGCGTCGTTCTTCAA
ATCCGGCCGACAATTGGCGGCATGGATAGGCCTGGTGCCGCGGCAGAACTCATCGGGTGGCAAGGACCGCCTCGGAAGGATCAGCAAACAAGGCGATCCC
TATCTCCGCCGGCTTCTTGTTGTGGGCGCGCATGCGGTGCTTCGTTTCAGCGGCAAGGCTAAAGTTGCACCGACGCGTTGGGCCGCCGAACTTCTGCCGC
ACAACTTCGTCGCTGTTGCTTTGGCCAACAAGATGGTGCGGATCGTCTGGGCGTTGATGACGACGGGCAGGCGCTTTGAGGCGACCGCTGCCCTTTGAAT
GCTCACAGAGGATGCAGAAATTGGTGAGGTGCTGATGGCGTGATGGCGAACGGTCGAGCCGGGATCGGACAAACCCGATCAGTGGGTGCCGCTTGAAAGC
ATTGACCTGTCTGGGATCCGATCAGCGGACTACATCAGGGCCAGCGGCATGAACGCGCCGCAATCAAAGGCCGTATACATGCCTGCACCCGACCAATCTG
CCAGAAACACTAACTGCCCCTTGCCACGGAGGCCGTCCATAC
TTGGTCTGGATATCGCCAAGCATGTATTTCAGGTTCACGGGATCAATGGTGCCGGCGCGACGGTGAACCGCCGCAAGCTGCGCCGCGACGATGTCGTTGG
ATTCTTCAAGGCATTGCCGCCATGCCTGATCGGAATCGAGGCATGCGCGACTGGACACCACTGGGCTCGGGTTCTTATGGCGCTGGGTCACGAGGTTCGG
CTGATGCCGGCGTCTTACGTCAAGCCATATGTGAAGCGGCAGAAGAATGACGCGACGGATGCCGAGGCGATTTGCGAGGCGGTGACGCGGCCGACGATGC
GCTTCGTTCCAGTGAAAAGCGAGGAGCAACAGGGTGTGCTGATGCGGCATCGGGTCCGCGAGCTTTTGATCCGGCAGCGGACAATGCTGGTGAACGCCTT
GCGCGGCCACTTGGCGGAGTTCGGCATCGTAACGCGACAGGGCATTGCCGGCGTCGGAATGCTGATCGCGTTGGTCGACGACGATGATCACGATCTAATC
CCGCCGCTTGCGCGGTCCGCGCTTCTTCCCCTAATCGGGCAGTTGCGGGAGGTGCACGAGAAGGTCAGAGAGCTGGATCGCCAAATTCATGCTTGGCATC
GCTCGAACGAACTGAGCCGCCGCCTTGAGACGATCCCTGGAATTGGCCCGATCACTGCCAGCGCAATTGCCGCGACGGTGACCGACGCGTCGTTCTTCAA
ATCCGGCCGACAATTGGCGGCATGGATAGGCCTGGTGCCGCGGCAGAACTCATCGGGTGGCAAGGACCGCCTCGGAAGGATCAGCAAACAAGGCGATCCC
TATCTCCGCCGGCTTCTTGTTGTGGGCGCGCATGCGGTGCTTCGTTTCAGCGGCAAGGCTAAAGTTGCACCGACGCGTTGGGCCGCCGAACTTCTGCCGC
ACAACTTCGTCGCTGTTGCTTTGGCCAACAAGATGGTGCGGATCGTCTGGGCGTTGATGACGACGGGCAGGCGCTTTGAGGCGACCGCTGCCCTTTGAAT
GCTCACAGAGGATGCAGAAATTGGTGAGGTGCTGATGGCGTGATGGCGAACGGTCGAGCCGGGATCGGACAAACCCGATCAGTGGGTGCCGCTTGAAAGC
ATTGACCTGTCTGGGATCCGATCAGCGGACTACATCAGGGCCAGCGGCATGAACGCGCCGCAATCAAAGGCCGTATACATGCCTGCACCCGACCAATCTG
CCAGAAACACTAACTGCCCCTTGCCACGGAGGCCGTCCATAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1017 bp | 338 aa | 82 | 1098 | + | No |
Chemistry : DEDD
ORF sequence :
MEKITTIGLDIAKHVFQVHGINGAGATVNRRKLRRDDVVGFFKALPPCLIGIEACATGHHWARVLMALGHEVRLMPASYVKPYVKRQKNDATDAEAICEA
VTRPTMRFVPVKSEEQQGVLMRHRVRELLIRQRTMLVNALRGHLAEFGIVTRQGIAGVGMLIALVDDDDHDLIPPLARSALLPLIGQLREVHEKVRELDR
QIHAWHRSNELSRRLETIPGIGPITASAIAATVTDASFFKSGRQLAAWIGLVPRQNSSGGKDRLGRISKQGDPYLRRLLVVGAHAVLRFSGKAKVAPTRW
AAELLPHNFVAVALANKMVRIVWALMTTGRRFEATAAL
VTRPTMRFVPVKSEEQQGVLMRHRVRELLIRQRTMLVNALRGHLAEFGIVTRQGIAGVGMLIALVDDDDHDLIPPLARSALLPLIGQLREVHEKVRELDR
QIHAWHRSNELSRRLETIPGIGPITASAIAATVTDASFFKSGRQLAAWIGLVPRQNSSGGKDRLGRISKQGDPYLRRLLVVGAHAVLRFSGKAKVAPTRW
AAELLPHNFVAVALANKMVRIVWALMTTGRRFEATAAL
Blast result :
Comments
ISRel7 is 72% aa similar to ISCc4.
References