ISRel12
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AEYF01000045 | ND | Rhizobium sp. | Rhizobium etli bv. mimosae Mim1 plasmid pRetMIM1e Rhizobium sp. CCGE 510 plasmid pRspCCGE510d Rhizobium etli CFN42 Rhizobium etli bv. phaseoli IE4803 plasmid pRetIE4803b |
DNA section
IS Length : 1002 bp
Ends
IR Length : 23
IRL : TGTTTAGTCCCGGCATTTGATGGTGCATTATTTTCCTTGGCATGGAGGGA
IRR : TGTTTAGTCCCGGCATTTGATGGATCGGATCGATGATGAAACGATCTGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCTTCCGAA | CCTAGT | CCAAGAAGTT | 6 |
DNA sequence
TGTTTAGTCCCGGCATTTGATGGTGCATTATTTTCCTTGGCATGGAGGGAAGCACTATGGGCCAGGTTCTACACGGGAGCGCCACGACGACAGAGGCAAT
CCGTCGAGCAATACAAAATAGTGAAGAGAGCCTGAGAACGCTTTCGAAGCGATACGGGATCAACCAGAAGACCGTAGCTAAATGGAAGAAGCGGACATCG
TTGGCCGACCTTCCGACAGGCCCGAAGGCCCCACACTCGACGACCCTTTCCCTCGAAGAAGAGGCCGTCATCGTCGCCTTCCGCCGGCATACATTGCTGC
CGCTCGATGATTGCCTCTACGCTCTTCAGCCGACCATCTCACATCTGACGCGATCGTCGTTGCACAGGTGTTTGCAGCGCCACGGCATTTCACGTCTGCT
GGAGGTCGGAGGCGACAAGGAACCGAAGAAGAAGTTTAAAAGTTATCCCATCGGCTATTTCCACATCGATATTGCCGAGGTGCAGACGGCCGAGGGCAAG
CTCTATCTCTTTGTAGCAATTGACCGAACATCCAAGTTCGCGTTCACAGAACTCTACACCAAAGCCGGCAAGATGAATGCCGCCCAGTTCTTGCGCAATC
TGATCGCGGCAGTGCCCTACACCATTCACACCGTTTTGACCGATAATGGCATTCAATTCACCAACCGAGCTTGTGATCGAAATGCCTTCCAGCACATCTT
CGACTGGGTCTGCGACGATCACAGCATCGAGCATCGCCTGACCAAGGTGAAGCACCCCTGGACCAACGGACAGGTCGAGCGGATGAACCGAACGATCAAG
GAAGCGACCGTCAAGCGCTTCCACTACGACGATCATGCGCAATTGAAAAAACATCTGGCCGACTTTATCGACGCCTACAATTTCGGGCGCCGGCTCAAGA
CGCTAAAGGGCCTTACGCCTTACGAGTTCATCTGCAAACAATGGACTTTGGAGCCAGATCGTTTCATCATCGATCCGATCCATCAAATGCCGGGACTAAA
CA
CCGTCGAGCAATACAAAATAGTGAAGAGAGCCTGAGAACGCTTTCGAAGCGATACGGGATCAACCAGAAGACCGTAGCTAAATGGAAGAAGCGGACATCG
TTGGCCGACCTTCCGACAGGCCCGAAGGCCCCACACTCGACGACCCTTTCCCTCGAAGAAGAGGCCGTCATCGTCGCCTTCCGCCGGCATACATTGCTGC
CGCTCGATGATTGCCTCTACGCTCTTCAGCCGACCATCTCACATCTGACGCGATCGTCGTTGCACAGGTGTTTGCAGCGCCACGGCATTTCACGTCTGCT
GGAGGTCGGAGGCGACAAGGAACCGAAGAAGAAGTTTAAAAGTTATCCCATCGGCTATTTCCACATCGATATTGCCGAGGTGCAGACGGCCGAGGGCAAG
CTCTATCTCTTTGTAGCAATTGACCGAACATCCAAGTTCGCGTTCACAGAACTCTACACCAAAGCCGGCAAGATGAATGCCGCCCAGTTCTTGCGCAATC
TGATCGCGGCAGTGCCCTACACCATTCACACCGTTTTGACCGATAATGGCATTCAATTCACCAACCGAGCTTGTGATCGAAATGCCTTCCAGCACATCTT
CGACTGGGTCTGCGACGATCACAGCATCGAGCATCGCCTGACCAAGGTGAAGCACCCCTGGACCAACGGACAGGTCGAGCGGATGAACCGAACGATCAAG
GAAGCGACCGTCAAGCGCTTCCACTACGACGATCATGCGCAATTGAAAAAACATCTGGCCGACTTTATCGACGCCTACAATTTCGGGCGCCGGCTCAAGA
CGCTAAAGGGCCTTACGCCTTACGAGTTCATCTGCAAACAATGGACTTTGGAGCCAGATCGTTTCATCATCGATCCGATCCATCAAATGCCGGGACTAAA
CA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 57 | 1007 | + | No |
Chemistry : DDE
ORF sequence :
MGQVLHGSATTTEAIRRAIQNSEESLRTLSKRYGINQKTVAKWKKRTSLADLPTGPKAPHSTTLSLEEEAVIVAFRRHTLLPLDDCLYALQPTISHLTRS
SLHRCLQRHGISRLLEVGGDKEPKKKFKSYPIGYFHIDIAEVQTAEGKLYLFVAIDRTSKFAFTELYTKAGKMNAAQFLRNLIAAVPYTIHTVLTDNGIQ
FTNRACDRNAFQHIFDWVCDDHSIEHRLTKVKHPWTNGQVERMNRTIKEATVKRFHYDDHAQLKKHLADFIDAYNFGRRLKTLKGLTPYEFICKQWTLEP
DRFIIDPIHQMPGLNT
SLHRCLQRHGISRLLEVGGDKEPKKKFKSYPIGYFHIDIAEVQTAEGKLYLFVAIDRTSKFAFTELYTKAGKMNAAQFLRNLIAAVPYTIHTVLTDNGIQ
FTNRACDRNAFQHIFDWVCDDHSIEHRLTKVKHPWTNGQVERMNRTIKEATVKRFHYDDHAQLKKHLADFIDAYNFGRRLKTLKGLTPYEFICKQWTLEP
DRFIIDPIHQMPGLNT
Blast result :
Comments
ISRel12 is 89% aa similar to ISNwi5. The STOP codon is in the direct repeat.
References