ISHarch16

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002988 ND Halophilic archaeon
Halophilic archaeon DL31
DNA section
IS Length : 1419 bp

Ends


Left end : CAGAAATCAAGGCAGAGTGCCTCGGGGCTTGACCCCGAGGGTGAATGCCGACAACTCCTAACCTATCAACGCTAGTCCATACATTTACAACACCACAGTC II struct. : Yes
Right end : GTGACCCATGACACCGCTACAGGCCATCAAGCCGATGGTGTCGTGGGAGTGTCCGACTAACCCACGGGAAGCCTCGGGGCTTGAACCCGAGGCAATTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGCGTCGGTGAATCTACGAAGCCACGCCtcac
GACGCAGTCGAGTCTATCACACACTACAtcac

DNA sequence

CAGAAATCAAGGCAGAGTGCCTCGGGGCTTGACCCCGAGGGTGAATGCCGACAACTCCTAACCTATCAACGCTAGTCCATACATTTACAACACCACAGTC
CGTCGAATACAGTATGGAGAAGTCGCTCACGAAGACATTAATCTTCCAACTCCAATCCGACGACGAGCGACTGCTCTCAGAAGCGTACCACGAAGCCCGA
TGGGTGTACAACCAGACCATCCAATTAGCCACGAACGGAATGGACTGGGACGACATCTCGCCCCGTCTCGAAGACGAGGCAAACCTCGTGAAGAACACTA
CGCAACGAATCGTCGCCAAGTCGCTTGAAGCACTGCAACAATCCTACGACCGCGACAACTACAACACACCCAGTCACGGGAAGACGGGGCCGTACCCGTT
GAGAATGAACTTCACCGAAGGCTACAACCTCACGCTCGAAGACGACGAGATACACTACCGCATCAGTGCCAAACCGTACAACCCGGTGAACGGCACACTT
CGTGGCTCACCAGATAACGTCGAACTTCTCGAACAAGCACTCGAAAGCGACGAGTGGCGTGTAGGGACTGCTGAAGCGATAGTTCGTAACGGCAACCACG
AACTGCACGTCAACGTCACCCACCTCGAAGCAACAGTCCCAGACAAACACGATACTCAAACCGTCGTGGGAGTGGATATTAACGAGGACTGTGTGGCTCT
TGCCGCCCTTTGTGAAGACTACTTTGTTGATTCGGTGGTCATCGACTACCCTGAAATCAAGCAAGAGCGGCATCGGTACTTCACGATGCGAAAGCGAATG
CAGAATGTGGGGCAGACAGCGTTCGACCGCGTGTTCGAGAACAAGGAAGAGCGATACGTTCACGACCAACTCCACCAAGTCTCCCGACGAATCGTGGAAT
GGGTTCAGCAATTCGAGTCGCCGCTCGTTGTGTTTGAAGACCTCAAGCATATGCGAGATTCGATTGATTACGGCACTCGGATGAATCGTCGGTTGCACTC
GTTGCCGTTTCACAAACTTCGTTCGTTCGTCGCGTACAAAGCGGCGTTCGAGGGGATTCCGAGCGAGGAGATTGACCCGGCTCACACCAGTCAAGCGTGT
TCTTTTACTGAGTGTGAGCATACGGCTCGATTGAATCGCCGGAAGAAACGGTTCAAATGCAACGCGTGTGGTCGACAAGACCACGCTGACCGGAACGCGG
CAGTGAATATTGCGAAGAAAGGGTTGGAGTCGCTGAATCGAAATGTGCCTGCTCTCAAGACGTTACCGAACATTCGGAAACTGCGACGGCAGGCATCGGG
CTGTGTGAATCAGCCGACCGTGACCCATGACACCGCTACAGGCCATCAAGCCGATGGTGTCGTGGGAGTGTCCGACTAACCCACGGGAAGCCTCGGGGCT
TGAACCCGAGGCAATTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1266 bp421 aa1141379+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEKSLTKTLIFQLQSDDERLLSEAYHEARWVYNQTIQLATNGMDWDDISPRLEDEANLVKNTTQRIVAKSLEALQQSYDRDNYNTPSHGKTGPYPLRMNF
TEGYNLTLEDDEIHYRISAKPYNPVNGTLRGSPDNVELLEQALESDEWRVGTAEAIVRNGNHELHVNVTHLEATVPDKHDTQTVVGVDINEDCVALAALC
EDYFVDSVVIDYPEIKQERHRYFTMRKRMQNVGQTAFDRVFENKEERYVHDQLHQVSRRIVEWVQQFESPLVVFEDLKHMRDSIDYGTRMNRRLHSLPFH
KLRSFVAYKAAFEGIPSEEIDPAHTSQACSFTECEHTARLNRRKKRFKCNACGRQDHADRNAAVNIAKKGLESLNRNVPALKTLPNIRKLRRQASGCVNQ
PTVTHDTATGHQADGVVGVSD

 

Blast result :
Comments
ISHarch16 is 84% (TnpB) aa similar to ISNph8.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank