ISHarch16
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002988 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 1419 bp
Ends
Left end : CAGAAATCAAGGCAGAGTGCCTCGGGGCTTGACCCCGAGGGTGAATGCCGACAACTCCTAACCTATCAACGCTAGTCCATACATTTACAACACCACAGTC II struct. : Yes
Right end : GTGACCCATGACACCGCTACAGGCCATCAAGCCGATGGTGTCGTGGGAGTGTCCGACTAACCCACGGGAAGCCTCGGGGCTTGAACCCGAGGCAATTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGCGTCGGTGAA | TCTA | CGAAGCCACGCC | tcac |
GACGCAGTCGAG | TCTA | TCACACACTACA | tcac |
DNA sequence
CAGAAATCAAGGCAGAGTGCCTCGGGGCTTGACCCCGAGGGTGAATGCCGACAACTCCTAACCTATCAACGCTAGTCCATACATTTACAACACCACAGTC
CGTCGAATACAGTATGGAGAAGTCGCTCACGAAGACATTAATCTTCCAACTCCAATCCGACGACGAGCGACTGCTCTCAGAAGCGTACCACGAAGCCCGA
TGGGTGTACAACCAGACCATCCAATTAGCCACGAACGGAATGGACTGGGACGACATCTCGCCCCGTCTCGAAGACGAGGCAAACCTCGTGAAGAACACTA
CGCAACGAATCGTCGCCAAGTCGCTTGAAGCACTGCAACAATCCTACGACCGCGACAACTACAACACACCCAGTCACGGGAAGACGGGGCCGTACCCGTT
GAGAATGAACTTCACCGAAGGCTACAACCTCACGCTCGAAGACGACGAGATACACTACCGCATCAGTGCCAAACCGTACAACCCGGTGAACGGCACACTT
CGTGGCTCACCAGATAACGTCGAACTTCTCGAACAAGCACTCGAAAGCGACGAGTGGCGTGTAGGGACTGCTGAAGCGATAGTTCGTAACGGCAACCACG
AACTGCACGTCAACGTCACCCACCTCGAAGCAACAGTCCCAGACAAACACGATACTCAAACCGTCGTGGGAGTGGATATTAACGAGGACTGTGTGGCTCT
TGCCGCCCTTTGTGAAGACTACTTTGTTGATTCGGTGGTCATCGACTACCCTGAAATCAAGCAAGAGCGGCATCGGTACTTCACGATGCGAAAGCGAATG
CAGAATGTGGGGCAGACAGCGTTCGACCGCGTGTTCGAGAACAAGGAAGAGCGATACGTTCACGACCAACTCCACCAAGTCTCCCGACGAATCGTGGAAT
GGGTTCAGCAATTCGAGTCGCCGCTCGTTGTGTTTGAAGACCTCAAGCATATGCGAGATTCGATTGATTACGGCACTCGGATGAATCGTCGGTTGCACTC
GTTGCCGTTTCACAAACTTCGTTCGTTCGTCGCGTACAAAGCGGCGTTCGAGGGGATTCCGAGCGAGGAGATTGACCCGGCTCACACCAGTCAAGCGTGT
TCTTTTACTGAGTGTGAGCATACGGCTCGATTGAATCGCCGGAAGAAACGGTTCAAATGCAACGCGTGTGGTCGACAAGACCACGCTGACCGGAACGCGG
CAGTGAATATTGCGAAGAAAGGGTTGGAGTCGCTGAATCGAAATGTGCCTGCTCTCAAGACGTTACCGAACATTCGGAAACTGCGACGGCAGGCATCGGG
CTGTGTGAATCAGCCGACCGTGACCCATGACACCGCTACAGGCCATCAAGCCGATGGTGTCGTGGGAGTGTCCGACTAACCCACGGGAAGCCTCGGGGCT
TGAACCCGAGGCAATTCAC
CGTCGAATACAGTATGGAGAAGTCGCTCACGAAGACATTAATCTTCCAACTCCAATCCGACGACGAGCGACTGCTCTCAGAAGCGTACCACGAAGCCCGA
TGGGTGTACAACCAGACCATCCAATTAGCCACGAACGGAATGGACTGGGACGACATCTCGCCCCGTCTCGAAGACGAGGCAAACCTCGTGAAGAACACTA
CGCAACGAATCGTCGCCAAGTCGCTTGAAGCACTGCAACAATCCTACGACCGCGACAACTACAACACACCCAGTCACGGGAAGACGGGGCCGTACCCGTT
GAGAATGAACTTCACCGAAGGCTACAACCTCACGCTCGAAGACGACGAGATACACTACCGCATCAGTGCCAAACCGTACAACCCGGTGAACGGCACACTT
CGTGGCTCACCAGATAACGTCGAACTTCTCGAACAAGCACTCGAAAGCGACGAGTGGCGTGTAGGGACTGCTGAAGCGATAGTTCGTAACGGCAACCACG
AACTGCACGTCAACGTCACCCACCTCGAAGCAACAGTCCCAGACAAACACGATACTCAAACCGTCGTGGGAGTGGATATTAACGAGGACTGTGTGGCTCT
TGCCGCCCTTTGTGAAGACTACTTTGTTGATTCGGTGGTCATCGACTACCCTGAAATCAAGCAAGAGCGGCATCGGTACTTCACGATGCGAAAGCGAATG
CAGAATGTGGGGCAGACAGCGTTCGACCGCGTGTTCGAGAACAAGGAAGAGCGATACGTTCACGACCAACTCCACCAAGTCTCCCGACGAATCGTGGAAT
GGGTTCAGCAATTCGAGTCGCCGCTCGTTGTGTTTGAAGACCTCAAGCATATGCGAGATTCGATTGATTACGGCACTCGGATGAATCGTCGGTTGCACTC
GTTGCCGTTTCACAAACTTCGTTCGTTCGTCGCGTACAAAGCGGCGTTCGAGGGGATTCCGAGCGAGGAGATTGACCCGGCTCACACCAGTCAAGCGTGT
TCTTTTACTGAGTGTGAGCATACGGCTCGATTGAATCGCCGGAAGAAACGGTTCAAATGCAACGCGTGTGGTCGACAAGACCACGCTGACCGGAACGCGG
CAGTGAATATTGCGAAGAAAGGGTTGGAGTCGCTGAATCGAAATGTGCCTGCTCTCAAGACGTTACCGAACATTCGGAAACTGCGACGGCAGGCATCGGG
CTGTGTGAATCAGCCGACCGTGACCCATGACACCGCTACAGGCCATCAAGCCGATGGTGTCGTGGGAGTGTCCGACTAACCCACGGGAAGCCTCGGGGCT
TGAACCCGAGGCAATTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1266 bp | 421 aa | 114 | 1379 | + | No |
AG : TnpB
ORF sequence :
MEKSLTKTLIFQLQSDDERLLSEAYHEARWVYNQTIQLATNGMDWDDISPRLEDEANLVKNTTQRIVAKSLEALQQSYDRDNYNTPSHGKTGPYPLRMNF
TEGYNLTLEDDEIHYRISAKPYNPVNGTLRGSPDNVELLEQALESDEWRVGTAEAIVRNGNHELHVNVTHLEATVPDKHDTQTVVGVDINEDCVALAALC
EDYFVDSVVIDYPEIKQERHRYFTMRKRMQNVGQTAFDRVFENKEERYVHDQLHQVSRRIVEWVQQFESPLVVFEDLKHMRDSIDYGTRMNRRLHSLPFH
KLRSFVAYKAAFEGIPSEEIDPAHTSQACSFTECEHTARLNRRKKRFKCNACGRQDHADRNAAVNIAKKGLESLNRNVPALKTLPNIRKLRRQASGCVNQ
PTVTHDTATGHQADGVVGVSD
TEGYNLTLEDDEIHYRISAKPYNPVNGTLRGSPDNVELLEQALESDEWRVGTAEAIVRNGNHELHVNVTHLEATVPDKHDTQTVVGVDINEDCVALAALC
EDYFVDSVVIDYPEIKQERHRYFTMRKRMQNVGQTAFDRVFENKEERYVHDQLHQVSRRIVEWVQQFESPLVVFEDLKHMRDSIDYGTRMNRRLHSLPFH
KLRSFVAYKAAFEGIPSEEIDPAHTSQACSFTECEHTARLNRRKKRFKCNACGRQDHADRNAAVNIAKKGLESLNRNVPALKTLPNIRKLRRQASGCVNQ
PTVTHDTATGHQADGVVGVSD
Blast result :
Comments
ISHarch16 is 84% (TnpB) aa similar to ISNph8.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank