ISHarch15
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002988 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 1988 bp
Ends
Left end : ATTCGAGGCGAAAGCCTCGCCCTTCGGGGGCATGGCGAGCGCGAAGCTCTCGCTGCAACCGAAAAGCTTCGCTTTTCGAGGACGGGGATGAAGCCGACCA II struct. : No
Right end : TCCCAAAGAAGTGCGCACGAACCCGCAAGTTGCCTCCGTGGGTCGGTAGCCGAACCCCCAACGGAGGAATCCTCGCGCTTTAGCGCGGGGAGGATGTCAA II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTTGGAACGAACTTAC | GGAA | TGCGGGGTCCGA |
DNA sequence
ATTCGAGGCGAAAGCCTCGCCCTTCGGGGGCATGGCGAGCGCGAAGCTCTCGCTGCAACCGAAAAGCTTCGCTTTTCGAGGACGGGGATGAAGCCGACCA
ACAGTATTCAACCGCCGACGATGGCATAGACGGGGTTCCAACGCAATCTTTAACGCGTCCGACCGTAATAGTATGCATAGATGGTGAAGAGTACCCGTCA
CGCGAAATACGAACTCTACTACCACATAGTGTTCGTGCCGAAATCGGGCAGAACCGAAGGTTCTGCTGACCTCGCGGAACAAGGTTCCGCTCAGTATCGG
CGTTCGCACCTGACGGGGAAGACGAAGGAACGTCTCGAAACCATCTTCGCGGAAATCTGTGAGGACAATGACCTCGAACTGGCCGAGTCCGAGGTCATGC
CCGACCACGTACACTTGTTCATCGGGAGTCCACCGAAGAACGCCCCGTCACTCATCGTCAACTGGGTCAAGGGCATCTCCGCGCGGAAGTACAACCAACG
CTACGACGACCGCGTGAAGTGGACTCGTTCCTACTACGTTGGTACGGCGGGAAGCGCCTCGAAGGGCGCTGTCGAACGCTACGTCGCTGAACAGGAGGGT
GACGACGAATGAAGCGCGTCAACACCTTCGAGGTCGTCCCCCAGACCGAGACCGGCAAAGAGTGCCTCCTACGGCTACTCGACGCCTCTGCTTCCCTGTG
GAACGAACTCACCTACGAACGTCGTCAGAACTACTTCGGTGACGGCGACGTGTGGGACACTTCCGAATACCGTGGACAATACAACGGTGTCGTCGGAAGC
GCGACCGTCCAACAGGTCACGCGCAAGAACAGCGAAGCGTGGCGGTCGTTCTTCGCCCTCAAGGAAAAAGGCGAGTACGCCAACCCACCGTCGTACTGGG
GCAACGAGGAGGACGGGCGCGAACTCCGTACCTACATTCGGTGCAACCAGTACACAATTCAGTGGGGCAAGCGGTCGCGTCTCGAAATCCCTGTCGGGCA
AGAACTGAAAGACGAATACGGACTCGGCTACCACGAACGACTCTCCCTCGAAGTCCGAGGCAACCCGAAGTGGGACGGCAAACAGGGTCGTCTGGAACTT
GAGTACGACGAGGTTAGCGACATGTTCAGGGCTTTCCAACCAGTCACCGTACCTGATTCTCGACTGGATTCACCACTGGCTTCTCACGAAGCCGCCCTCG
ACGTTGGCGCGAATAATCTCGTCGTCTGTTCCACGACTACTGGTTCTCAGTACCTCTACGATGGTCGAGAGTTGTTCGGACGGTTCCGCGAGACGACAGA
TGAAATCGCTCGCCTACAGTCGAAATTGCCCGAGAGACGCAGTCTCTCGGAATCACGGAAGACGGAGTCTTCCGGACGACTCCGAGAGGGACGCTACAGT
TCCAAGCGGATTCGACGGCTGTACCGACAGCGGACGAAGCGTCGTGACCACGCACAGAACGCGCTGGTGCGCGACCTCGTTGAACGGCTGTACGACGAGG
GCGTAGCGACGGTGTACGTGGGCGACTTGACCGACGTGCTGGAAACGCACTGGTCGGTCAGGGTGAATGAGAAGACGCACAACTTCTGGGCGTTCAAGAA
GTTCATCCACCGTCTCGCGTGCGTCTGTGAGGAATACGACATCTCCCTTGAAGCCGAGTCGGAAGCGTGGACGAGTCAGACGTGTCCTGAGTGTGGCGAC
CACGAGGAGACGATTCGCCACGAGGATACACTGACGTGTTCGTGCGGTTTCGAGGGGCACGCCGACCTCACGGCGTCAGAGACGTTCCTTCGAGAAAACA
GCGATTGCGAAATCAGGCCGATGGCACGGCCCGTGCGATTCGAGTGGGACGACCACGACTGGTCGGGGAAACCACACCCTCATGAAAGTCCCAAAGAAGT
GCGCACGAACCCGCAAGTTGCCTCCGTGGGTCGGTAGCCGAACCCCCAACGGAGGAATCCTCGCGCTTTAGCGCGGGGAGGATGTCAA
ACAGTATTCAACCGCCGACGATGGCATAGACGGGGTTCCAACGCAATCTTTAACGCGTCCGACCGTAATAGTATGCATAGATGGTGAAGAGTACCCGTCA
CGCGAAATACGAACTCTACTACCACATAGTGTTCGTGCCGAAATCGGGCAGAACCGAAGGTTCTGCTGACCTCGCGGAACAAGGTTCCGCTCAGTATCGG
CGTTCGCACCTGACGGGGAAGACGAAGGAACGTCTCGAAACCATCTTCGCGGAAATCTGTGAGGACAATGACCTCGAACTGGCCGAGTCCGAGGTCATGC
CCGACCACGTACACTTGTTCATCGGGAGTCCACCGAAGAACGCCCCGTCACTCATCGTCAACTGGGTCAAGGGCATCTCCGCGCGGAAGTACAACCAACG
CTACGACGACCGCGTGAAGTGGACTCGTTCCTACTACGTTGGTACGGCGGGAAGCGCCTCGAAGGGCGCTGTCGAACGCTACGTCGCTGAACAGGAGGGT
GACGACGAATGAAGCGCGTCAACACCTTCGAGGTCGTCCCCCAGACCGAGACCGGCAAAGAGTGCCTCCTACGGCTACTCGACGCCTCTGCTTCCCTGTG
GAACGAACTCACCTACGAACGTCGTCAGAACTACTTCGGTGACGGCGACGTGTGGGACACTTCCGAATACCGTGGACAATACAACGGTGTCGTCGGAAGC
GCGACCGTCCAACAGGTCACGCGCAAGAACAGCGAAGCGTGGCGGTCGTTCTTCGCCCTCAAGGAAAAAGGCGAGTACGCCAACCCACCGTCGTACTGGG
GCAACGAGGAGGACGGGCGCGAACTCCGTACCTACATTCGGTGCAACCAGTACACAATTCAGTGGGGCAAGCGGTCGCGTCTCGAAATCCCTGTCGGGCA
AGAACTGAAAGACGAATACGGACTCGGCTACCACGAACGACTCTCCCTCGAAGTCCGAGGCAACCCGAAGTGGGACGGCAAACAGGGTCGTCTGGAACTT
GAGTACGACGAGGTTAGCGACATGTTCAGGGCTTTCCAACCAGTCACCGTACCTGATTCTCGACTGGATTCACCACTGGCTTCTCACGAAGCCGCCCTCG
ACGTTGGCGCGAATAATCTCGTCGTCTGTTCCACGACTACTGGTTCTCAGTACCTCTACGATGGTCGAGAGTTGTTCGGACGGTTCCGCGAGACGACAGA
TGAAATCGCTCGCCTACAGTCGAAATTGCCCGAGAGACGCAGTCTCTCGGAATCACGGAAGACGGAGTCTTCCGGACGACTCCGAGAGGGACGCTACAGT
TCCAAGCGGATTCGACGGCTGTACCGACAGCGGACGAAGCGTCGTGACCACGCACAGAACGCGCTGGTGCGCGACCTCGTTGAACGGCTGTACGACGAGG
GCGTAGCGACGGTGTACGTGGGCGACTTGACCGACGTGCTGGAAACGCACTGGTCGGTCAGGGTGAATGAGAAGACGCACAACTTCTGGGCGTTCAAGAA
GTTCATCCACCGTCTCGCGTGCGTCTGTGAGGAATACGACATCTCCCTTGAAGCCGAGTCGGAAGCGTGGACGAGTCAGACGTGTCCTGAGTGTGGCGAC
CACGAGGAGACGATTCGCCACGAGGATACACTGACGTGTTCGTGCGGTTTCGAGGGGCACGCCGACCTCACGGCGTCAGAGACGTTCCTTCGAGAAAACA
GCGATTGCGAAATCAGGCCGATGGCACGGCCCGTGCGATTCGAGTGGGACGACCACGACTGGTCGGGGAAACCACACCCTCATGAAAGTCCCAAAGAAGT
GCGCACGAACCCGCAAGTTGCCTCCGTGGGTCGGTAGCCGAACCCCCAACGGAGGAATCCTCGCGCTTTAGCGCGGGGAGGATGTCAA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
432 bp | 143 aa | 181 | 612 | + | No |
Chemistry : Y1
ORF sequence :
MVKSTRHAKYELYYHIVFVPKSGRTEGSADLAEQGSAQYRRSHLTGKTKERLETIFAEICEDNDLELAESEVMPDHVHLFIGSPPKNAPSLIVNWVKGIS
ARKYNQRYDDRVKWTRSYYVGTAGSASKGAVERYVAEQEGDDE
ARKYNQRYDDRVKWTRSYYVGTAGSASKGAVERYVAEQEGDDE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1331 bp | 442 aa | 607 | 1937 | + | No |
AG : TnpB
ORF sequence :
MKRVNTFEVVPQTETGKECLLRLLDASASLWNELTYERRQNYFGDGDVWDTSEYRGQYNGVVGSATVQQVTRKNSEAWRSFFALKEKGEYANPPSYWGNE
EDGRELRTYIRCNQYTIQWGKRSRLEIPVGQELKDEYGLGYHERLSLEVRGNPKWDGKQGRLELEYDEVSDMFRAFQPVTVPDSRLDSPLASHEAALDVG
ANNLVVCSTTTGSQYLYDGRELFGRFRETTDEIARLQSKLPERRSLSESRKTESSGRLREGRYSSKRIRRLYRQRTKRRDHAQNALVRDLVERLYDEGVA
TVYVGDLTDVLETHWSVRVNEKTHNFWAFKKFIHRLACVCEEYDISLEAESEAWTSQTCPECGDHEETIRHEDTLTCSCGFEGHADLTASETFLRENSDC
EIRPMARPVRFEWDDHDWSGKPHPHESPKEVRTNPQVASVGR
EDGRELRTYIRCNQYTIQWGKRSRLEIPVGQELKDEYGLGYHERLSLEVRGNPKWDGKQGRLELEYDEVSDMFRAFQPVTVPDSRLDSPLASHEAALDVG
ANNLVVCSTTTGSQYLYDGRELFGRFRETTDEIARLQSKLPERRSLSESRKTESSGRLREGRYSSKRIRRLYRQRTKRRDHAQNALVRDLVERLYDEGVA
TVYVGDLTDVLETHWSVRVNEKTHNFWAFKKFIHRLACVCEEYDISLEAESEAWTSQTCPECGDHEETIRHEDTLTCSCGFEGHADLTASETFLRENSDC
EIRPMARPVRFEWDDHDWSGKPHPHESPKEVRTNPQVASVGR
Blast result :
Comments
ISHarch15 is 95% (TnpA : the transposase) and 93% (TnpB) aa similar to ISHbo5.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank