ISHarch15

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002988 ND Halophilic archaeon
Halophilic archaeon DL31
DNA section
IS Length : 1988 bp

Ends


Left end : ATTCGAGGCGAAAGCCTCGCCCTTCGGGGGCATGGCGAGCGCGAAGCTCTCGCTGCAACCGAAAAGCTTCGCTTTTCGAGGACGGGGATGAAGCCGACCA II struct. : No
Right end : TCCCAAAGAAGTGCGCACGAACCCGCAAGTTGCCTCCGTGGGTCGGTAGCCGAACCCCCAACGGAGGAATCCTCGCGCTTTAGCGCGGGGAGGATGTCAA II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TTTGGAACGAACTTACGGAATGCGGGGTCCGA

DNA sequence

ATTCGAGGCGAAAGCCTCGCCCTTCGGGGGCATGGCGAGCGCGAAGCTCTCGCTGCAACCGAAAAGCTTCGCTTTTCGAGGACGGGGATGAAGCCGACCA
ACAGTATTCAACCGCCGACGATGGCATAGACGGGGTTCCAACGCAATCTTTAACGCGTCCGACCGTAATAGTATGCATAGATGGTGAAGAGTACCCGTCA
CGCGAAATACGAACTCTACTACCACATAGTGTTCGTGCCGAAATCGGGCAGAACCGAAGGTTCTGCTGACCTCGCGGAACAAGGTTCCGCTCAGTATCGG
CGTTCGCACCTGACGGGGAAGACGAAGGAACGTCTCGAAACCATCTTCGCGGAAATCTGTGAGGACAATGACCTCGAACTGGCCGAGTCCGAGGTCATGC
CCGACCACGTACACTTGTTCATCGGGAGTCCACCGAAGAACGCCCCGTCACTCATCGTCAACTGGGTCAAGGGCATCTCCGCGCGGAAGTACAACCAACG
CTACGACGACCGCGTGAAGTGGACTCGTTCCTACTACGTTGGTACGGCGGGAAGCGCCTCGAAGGGCGCTGTCGAACGCTACGTCGCTGAACAGGAGGGT
GACGACGAATGAAGCGCGTCAACACCTTCGAGGTCGTCCCCCAGACCGAGACCGGCAAAGAGTGCCTCCTACGGCTACTCGACGCCTCTGCTTCCCTGTG
GAACGAACTCACCTACGAACGTCGTCAGAACTACTTCGGTGACGGCGACGTGTGGGACACTTCCGAATACCGTGGACAATACAACGGTGTCGTCGGAAGC
GCGACCGTCCAACAGGTCACGCGCAAGAACAGCGAAGCGTGGCGGTCGTTCTTCGCCCTCAAGGAAAAAGGCGAGTACGCCAACCCACCGTCGTACTGGG
GCAACGAGGAGGACGGGCGCGAACTCCGTACCTACATTCGGTGCAACCAGTACACAATTCAGTGGGGCAAGCGGTCGCGTCTCGAAATCCCTGTCGGGCA
AGAACTGAAAGACGAATACGGACTCGGCTACCACGAACGACTCTCCCTCGAAGTCCGAGGCAACCCGAAGTGGGACGGCAAACAGGGTCGTCTGGAACTT
GAGTACGACGAGGTTAGCGACATGTTCAGGGCTTTCCAACCAGTCACCGTACCTGATTCTCGACTGGATTCACCACTGGCTTCTCACGAAGCCGCCCTCG
ACGTTGGCGCGAATAATCTCGTCGTCTGTTCCACGACTACTGGTTCTCAGTACCTCTACGATGGTCGAGAGTTGTTCGGACGGTTCCGCGAGACGACAGA
TGAAATCGCTCGCCTACAGTCGAAATTGCCCGAGAGACGCAGTCTCTCGGAATCACGGAAGACGGAGTCTTCCGGACGACTCCGAGAGGGACGCTACAGT
TCCAAGCGGATTCGACGGCTGTACCGACAGCGGACGAAGCGTCGTGACCACGCACAGAACGCGCTGGTGCGCGACCTCGTTGAACGGCTGTACGACGAGG
GCGTAGCGACGGTGTACGTGGGCGACTTGACCGACGTGCTGGAAACGCACTGGTCGGTCAGGGTGAATGAGAAGACGCACAACTTCTGGGCGTTCAAGAA
GTTCATCCACCGTCTCGCGTGCGTCTGTGAGGAATACGACATCTCCCTTGAAGCCGAGTCGGAAGCGTGGACGAGTCAGACGTGTCCTGAGTGTGGCGAC
CACGAGGAGACGATTCGCCACGAGGATACACTGACGTGTTCGTGCGGTTTCGAGGGGCACGCCGACCTCACGGCGTCAGAGACGTTCCTTCGAGAAAACA
GCGATTGCGAAATCAGGCCGATGGCACGGCCCGTGCGATTCGAGTGGGACGACCACGACTGGTCGGGGAAACCACACCCTCATGAAAGTCCCAAAGAAGT
GCGCACGAACCCGCAAGTTGCCTCCGTGGGTCGGTAGCCGAACCCCCAACGGAGGAATCCTCGCGCTTTAGCGCGGGGAGGATGTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
432 bp143 aa181612+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MVKSTRHAKYELYYHIVFVPKSGRTEGSADLAEQGSAQYRRSHLTGKTKERLETIFAEICEDNDLELAESEVMPDHVHLFIGSPPKNAPSLIVNWVKGIS
ARKYNQRYDDRVKWTRSYYVGTAGSASKGAVERYVAEQEGDDE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1331 bp442 aa6071937+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKRVNTFEVVPQTETGKECLLRLLDASASLWNELTYERRQNYFGDGDVWDTSEYRGQYNGVVGSATVQQVTRKNSEAWRSFFALKEKGEYANPPSYWGNE
EDGRELRTYIRCNQYTIQWGKRSRLEIPVGQELKDEYGLGYHERLSLEVRGNPKWDGKQGRLELEYDEVSDMFRAFQPVTVPDSRLDSPLASHEAALDVG
ANNLVVCSTTTGSQYLYDGRELFGRFRETTDEIARLQSKLPERRSLSESRKTESSGRLREGRYSSKRIRRLYRQRTKRRDHAQNALVRDLVERLYDEGVA
TVYVGDLTDVLETHWSVRVNEKTHNFWAFKKFIHRLACVCEEYDISLEAESEAWTSQTCPECGDHEETIRHEDTLTCSCGFEGHADLTASETFLRENSDC
EIRPMARPVRFEWDDHDWSGKPHPHESPKEVRTNPQVASVGR

 

Blast result :
Comments
ISHarch15 is 95% (TnpA : the transposase) and 93% (TnpB) aa similar to ISHbo5.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank