ISHmu9

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001688 ND Halomicrobium mukohataei
Halomicrobium mukohataei DSM 12286
DNA section
IS Length : 697 bp

Ends


IR Length : 14/22

IRL : GGCGGTGTTCAGACATGGCTGAAAAGTGAGGCGGTTCGTTTTCAAAGTGA
IRR : GTTAGTGTTTGGGTAGGCTGATTTCATGCGAAGCTGAACGTTCTGAGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
GGTCGATCGGACTCCCCGTTCCTG0

DNA sequence

GGCGGTGTTCAGACATGGCTGAAAAGTGAGGCGGTTCGTTTTCAAAGTGACCTATGCCCGAAAACGACCGCCTCATCGGGAATTTAGACGAAATCAACTT
AGAGCTTGTTGAACGAGAAGCGACACCCCGATTTCTGATGAAATTCAGTATTCAGTTGTATCTCGCCGGATTGTCGCTTTCGAATACTGTTTCTGCTCTT
GAGATAGTTGGTGTCGAACGTGCTCGATCCACCGTTCATAACTGGGTTCACAAGGCCGAGCTACAGCCGGAGTCTGGTCGATCTCCGGATCAAATCGCGG
TTGACGAAACGGTGATCCGAATCGATGACGAGCAGTATTGGCTGTACGCCGCCGTCGATCCAGATTCAAACGAACTGCTCTATACACAGCTTGAGACGAC
GCGTACGACCGCTATTTCTCACGCATTCTCTGCCGAACTGCGCGAGAAACACCACGTCGACGACGCCGTGTTTCTCGTAGACGGTGCGACTCCGTTGGAA
GACGCGTGTTCACGTTATCGTCTCGATTTCAGATACCAAAAACATGGAACTCGGAACGGTGTCGAACGCATCTTTCGGGTGGTGAAGCGACGAACCTCTT
CGTCCTCAAACCGTTTCAGCCACGTCGACCCAGACACAGCTGACGACTGGCTCAGAACGTTCAGCTTCGCATGAAATCAGCCTACCCAAACACTAAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
621 bp206 aa54674+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPENDRLIGNLDEINLELVEREATPRFLMKFSIQLYLAGLSLSNTVSALEIVGVERARSTVHNWVHKAELQPESGRSPDQIAVDETVIRIDDEQYWLYAA
VDPDSNELLYTQLETTRTTAISHAFSAELREKHHVDDAVFLVDGATPLEDACSRYRLDFRYQKHGTRNGVERIFRVVKRRTSSSSNRFSHVDPDTADDWL
RTFSFA

 

Blast result :
Comments
ISHmu9 is 85% aa similar to ISNamo10.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277