ISHmu9
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001688 | ND | Halomicrobium mukohataei | Halomicrobium mukohataei DSM 12286 |
DNA section
IS Length : 697 bp
Ends
IR Length : 14/22
IRL : GGCGGTGTTCAGACATGGCTGAAAAGTGAGGCGGTTCGTTTTCAAAGTGA
IRR : GTTAGTGTTTGGGTAGGCTGATTTCATGCGAAGCTGAACGTTCTGAGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTCGATCGGAC | TCCCCGTTCCTG | 0 |
DNA sequence
GGCGGTGTTCAGACATGGCTGAAAAGTGAGGCGGTTCGTTTTCAAAGTGACCTATGCCCGAAAACGACCGCCTCATCGGGAATTTAGACGAAATCAACTT
AGAGCTTGTTGAACGAGAAGCGACACCCCGATTTCTGATGAAATTCAGTATTCAGTTGTATCTCGCCGGATTGTCGCTTTCGAATACTGTTTCTGCTCTT
GAGATAGTTGGTGTCGAACGTGCTCGATCCACCGTTCATAACTGGGTTCACAAGGCCGAGCTACAGCCGGAGTCTGGTCGATCTCCGGATCAAATCGCGG
TTGACGAAACGGTGATCCGAATCGATGACGAGCAGTATTGGCTGTACGCCGCCGTCGATCCAGATTCAAACGAACTGCTCTATACACAGCTTGAGACGAC
GCGTACGACCGCTATTTCTCACGCATTCTCTGCCGAACTGCGCGAGAAACACCACGTCGACGACGCCGTGTTTCTCGTAGACGGTGCGACTCCGTTGGAA
GACGCGTGTTCACGTTATCGTCTCGATTTCAGATACCAAAAACATGGAACTCGGAACGGTGTCGAACGCATCTTTCGGGTGGTGAAGCGACGAACCTCTT
CGTCCTCAAACCGTTTCAGCCACGTCGACCCAGACACAGCTGACGACTGGCTCAGAACGTTCAGCTTCGCATGAAATCAGCCTACCCAAACACTAAC
AGAGCTTGTTGAACGAGAAGCGACACCCCGATTTCTGATGAAATTCAGTATTCAGTTGTATCTCGCCGGATTGTCGCTTTCGAATACTGTTTCTGCTCTT
GAGATAGTTGGTGTCGAACGTGCTCGATCCACCGTTCATAACTGGGTTCACAAGGCCGAGCTACAGCCGGAGTCTGGTCGATCTCCGGATCAAATCGCGG
TTGACGAAACGGTGATCCGAATCGATGACGAGCAGTATTGGCTGTACGCCGCCGTCGATCCAGATTCAAACGAACTGCTCTATACACAGCTTGAGACGAC
GCGTACGACCGCTATTTCTCACGCATTCTCTGCCGAACTGCGCGAGAAACACCACGTCGACGACGCCGTGTTTCTCGTAGACGGTGCGACTCCGTTGGAA
GACGCGTGTTCACGTTATCGTCTCGATTTCAGATACCAAAAACATGGAACTCGGAACGGTGTCGAACGCATCTTTCGGGTGGTGAAGCGACGAACCTCTT
CGTCCTCAAACCGTTTCAGCCACGTCGACCCAGACACAGCTGACGACTGGCTCAGAACGTTCAGCTTCGCATGAAATCAGCCTACCCAAACACTAAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
621 bp | 206 aa | 54 | 674 | + | No |
Chemistry : DDE
ORF sequence :
MPENDRLIGNLDEINLELVEREATPRFLMKFSIQLYLAGLSLSNTVSALEIVGVERARSTVHNWVHKAELQPESGRSPDQIAVDETVIRIDDEQYWLYAA
VDPDSNELLYTQLETTRTTAISHAFSAELREKHHVDDAVFLVDGATPLEDACSRYRLDFRYQKHGTRNGVERIFRVVKRRTSSSSNRFSHVDPDTADDWL
RTFSFA
VDPDSNELLYTQLETTRTTAISHAFSAELREKHHVDDAVFLVDGATPLEDACSRYRLDFRYQKHGTRNGVERIFRVVKRRTSSSSNRFSHVDPDTADDWL
RTFSFA
Blast result :
Comments
ISHmu9 is 85% aa similar to ISNamo10.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277