ISRel26
- Family ISNCY
- Group IS1202
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007762 | ND | Rhizobium etli | Rhizobium etli CFN 42 plasmid p42a |
DNA section
IS Length : 1500 bp
Ends
IR Length : 34/48
IRL : TGTAGCCGCAAAGTTAAAGTGTCCTGTTTCTGCAAAGTTAGAATGTCACT
IRR : TGTGGCGGGGAAGTTGGAATGTCCGCCGTTGTGCAAAGTAGAAATGTCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATGCGATAT | GTTAT | GACGTAATAA | 5 |
DNA sequence
TGTAGCCGCAAAGTTAAAGTGTCCTGTTTCTGCAAAGTTAGAATGTCACTCTCTTCCCGTTTTTGATGACGGTGGAGATTGCGGATGGGATTGATAGCGA
TGAGCGAGCGCCATCTGCAGCGGATCGAGATTTTGTCGAAGGTGGTCGACGGCCGCATGACGTTGGTGTCGGCGGCACATGTGCTTGATCTGAGCGAGCG
CCAGGTGCGTCGGCTGCTGGATCGGATCCGCACTGACGGCGCGGCATCGATAAGGCACAAGGCGATCGGTCGGCCATCGAACAACCGGATCAGCGACGGC
GTTCGCGATTATGCGATGACGTTGGTTGGCGAACGCTATGCGGATTTCGGTCCGACGCTGGCGGCCGAGAAGCTGGCCGAACGCGATGGATTGCGTGTGT
CGCGCGAGACGTTGCGCAGCTGGATGGTGGAGGCTGGCCTGTGGCTATCTGCCAAGCAGCGGCGGACGTTTCATCAGCCGCGGCTGCGGCGCGAGGCCTA
TGGCGAGCTGGTGCAGATCGACGGGTCGGAACACCGCTGGTTCGAGGATCGCGGGCCGCCGTGCTCGCTGCTGGTGTTTGTCGACGATGCGACTGGCAGA
TTGATGCAGTTGCGGTTTGTGCGCTCGGAAAGCGCCTTCAGCTATTTCGAGGCACTGGCGCTATACCTCAGGCGTCACGGCGCGCCTGTGGCCTTCTACT
CCGACAAGCATTCGGTATTCCGGGTGGCGAAGAAGGACGCCAAGGGTGGCCAGGGGATGACCCAGTTCGGGCGGGCGCTTTGCGAGCTAAACATCGAGAT
TCTTTGCGCAAATTCGAGCCAGGCCAAAGGTCGCGTCGAGCGCATGAACCGGACGCTGCAGGATCGGCTGGTCAAGGAATTACGGCTGGCGGGAATCTGC
GACATGGAGACTGGCAATGCGTTTTTGCCTGGCTTCATGGAGCACTACAATGCGCGGTTTGCGATCATCCCTGCCCGGTCCGAGGATTTGCACCGGCCGC
TGAATCTGGCCCCGGGTCGGTTAACTGAGGTCCTTTGCAAGCGCGAGCAGCGTTACGTCGGGGCGCAGTTGACGTTTTCGTTTGAACGCAAGCGGATCAT
GCTGGAGGAGACCGAGGTGACGCGCGGTCTGGTGGGCCGCTATGTCGAGACCTATGCCTATGCTGACGGCCGCCTGGATGTGCGCTGGAAGGGACATTCC
CTGCCCTACACGGTGTTCGACAAGGACCAGCGGGTGACGCATGCGGCAATTACCGAGAACAAGCGGCTCGGTGATGTTCTGGCCTATATCAAGGAGCGTC
AGGACCAGCAGGAAAAGCCGGTCGTGAAGAGCAACAGCGACAAAAATGGCTATAAGCCGAGAGGTCGCAAGCCCGGAAGGCGCACGGACTACATGAATGA
TCCGGCGGTGATTGCGCGGCGAGAGAAAGCGCTGTTGAGGCAGCAGGCTGCCGAGTGAACCGTCGATCGGATAGTCTCAAAGCTCTAAAGCCGAAGGGGT
GTCTCTCACCCGCCCCGATCTGCTCTTGCAACCGGTATCAGCCGCTCAGATCGGGGCTGATCGGTGTGCCGCGTAGCAACCTCGCGGACATTTCTACTTT
GCACAACGGCGGACATTCCAACTTCCCCGCCACA
TGAGCGAGCGCCATCTGCAGCGGATCGAGATTTTGTCGAAGGTGGTCGACGGCCGCATGACGTTGGTGTCGGCGGCACATGTGCTTGATCTGAGCGAGCG
CCAGGTGCGTCGGCTGCTGGATCGGATCCGCACTGACGGCGCGGCATCGATAAGGCACAAGGCGATCGGTCGGCCATCGAACAACCGGATCAGCGACGGC
GTTCGCGATTATGCGATGACGTTGGTTGGCGAACGCTATGCGGATTTCGGTCCGACGCTGGCGGCCGAGAAGCTGGCCGAACGCGATGGATTGCGTGTGT
CGCGCGAGACGTTGCGCAGCTGGATGGTGGAGGCTGGCCTGTGGCTATCTGCCAAGCAGCGGCGGACGTTTCATCAGCCGCGGCTGCGGCGCGAGGCCTA
TGGCGAGCTGGTGCAGATCGACGGGTCGGAACACCGCTGGTTCGAGGATCGCGGGCCGCCGTGCTCGCTGCTGGTGTTTGTCGACGATGCGACTGGCAGA
TTGATGCAGTTGCGGTTTGTGCGCTCGGAAAGCGCCTTCAGCTATTTCGAGGCACTGGCGCTATACCTCAGGCGTCACGGCGCGCCTGTGGCCTTCTACT
CCGACAAGCATTCGGTATTCCGGGTGGCGAAGAAGGACGCCAAGGGTGGCCAGGGGATGACCCAGTTCGGGCGGGCGCTTTGCGAGCTAAACATCGAGAT
TCTTTGCGCAAATTCGAGCCAGGCCAAAGGTCGCGTCGAGCGCATGAACCGGACGCTGCAGGATCGGCTGGTCAAGGAATTACGGCTGGCGGGAATCTGC
GACATGGAGACTGGCAATGCGTTTTTGCCTGGCTTCATGGAGCACTACAATGCGCGGTTTGCGATCATCCCTGCCCGGTCCGAGGATTTGCACCGGCCGC
TGAATCTGGCCCCGGGTCGGTTAACTGAGGTCCTTTGCAAGCGCGAGCAGCGTTACGTCGGGGCGCAGTTGACGTTTTCGTTTGAACGCAAGCGGATCAT
GCTGGAGGAGACCGAGGTGACGCGCGGTCTGGTGGGCCGCTATGTCGAGACCTATGCCTATGCTGACGGCCGCCTGGATGTGCGCTGGAAGGGACATTCC
CTGCCCTACACGGTGTTCGACAAGGACCAGCGGGTGACGCATGCGGCAATTACCGAGAACAAGCGGCTCGGTGATGTTCTGGCCTATATCAAGGAGCGTC
AGGACCAGCAGGAAAAGCCGGTCGTGAAGAGCAACAGCGACAAAAATGGCTATAAGCCGAGAGGTCGCAAGCCCGGAAGGCGCACGGACTACATGAATGA
TCCGGCGGTGATTGCGCGGCGAGAGAAAGCGCTGTTGAGGCAGCAGGCTGCCGAGTGAACCGTCGATCGGATAGTCTCAAAGCTCTAAAGCCGAAGGGGT
GTCTCTCACCCGCCCCGATCTGCTCTTGCAACCGGTATCAGCCGCTCAGATCGGGGCTGATCGGTGTGCCGCGTAGCAACCTCGCGGACATTTCTACTTT
GCACAACGGCGGACATTCCAACTTCCCCGCCACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1374 bp | 457 aa | 58 | 1431 | + | No |
Chemistry : DDE
ORF sequence :
MGLIAMSERHLQRIEILSKVVDGRMTLVSAAHVLDLSERQVRRLLDRIRTDGAASIRHKAIGRPSNNRISDGVRDYAMTLVGERYADFGPTLAAEKLAER
DGLRVSRETLRSWMVEAGLWLSAKQRRTFHQPRLRREAYGELVQIDGSEHRWFEDRGPPCSLLVFVDDATGRLMQLRFVRSESAFSYFEALALYLRRHGA
PVAFYSDKHSVFRVAKKDAKGGQGMTQFGRALCELNIEILCANSSQAKGRVERMNRTLQDRLVKELRLAGICDMETGNAFLPGFMEHYNARFAIIPARSE
DLHRPLNLAPGRLTEVLCKREQRYVGAQLTFSFERKRIMLEETEVTRGLVGRYVETYAYADGRLDVRWKGHSLPYTVFDKDQRVTHAAITENKRLGDVLA
YIKERQDQQEKPVVKSNSDKNGYKPRGRKPGRRTDYMNDPAVIARREKALLRQQAAE
DGLRVSRETLRSWMVEAGLWLSAKQRRTFHQPRLRREAYGELVQIDGSEHRWFEDRGPPCSLLVFVDDATGRLMQLRFVRSESAFSYFEALALYLRRHGA
PVAFYSDKHSVFRVAKKDAKGGQGMTQFGRALCELNIEILCANSSQAKGRVERMNRTLQDRLVKELRLAGICDMETGNAFLPGFMEHYNARFAIIPARSE
DLHRPLNLAPGRLTEVLCKREQRYVGAQLTFSFERKRIMLEETEVTRGLVGRYVETYAYADGRLDVRWKGHSLPYTVFDKDQRVTHAAITENKRLGDVLA
YIKERQDQQEKPVVKSNSDKNGYKPRGRKPGRRTDYMNDPAVIARREKALLRQQAAE
Blast result :
Comments
ISRel26 is 66% aa similar to ISMex6. A copy of ISRel9 is inserted in the genomic copy of ISRel26 at position 1484, the ISRel9 sequence was in silico deleted in this file.
References