ISTma1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP011108 ND Thermotoga maritima
Thermotoga maritima MSB8
Thermotoga maritima Tma100
DNA section
IS Length : 1375 bp

Ends


Left end : ACAGAAATTGTTTGCAAAAGCCCATCCCCTTTAGGGGATTGGGAGGAAGCAGACATGTGTACCACCTCCAGATTCAATAGTGTTAATATATAGATGAGGT II struct. : Yes
Right end : AGCAGGTCAATCTTGAAAAGCTTTTAGGGGCCGTTGTCAGCCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCCTTCAGAGGGAGGGTAGCTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TCTTGAGAATTTTCACTGTTCCCTtgac

DNA sequence

ACAGAAATTGTTTGCAAAAGCCCATCCCCTTTAGGGGATTGGGAGGAAGCAGACATGTGTACCACCTCCAGATTCAATAGTGTTAATATATAGATGAGGT
GATTGAACAAATGACTGTGACTCTGACCTGTAGATTCAAACTCGAACTCAGCAAGGACCAAAAACAGCAGTTCCTGGATATTGCGACGGCTTACACAAAC
GCCGTCAACTATGTGCTCGAACAAAACCTCAAGGACAAATCGACGAACGTCAAAAAACTCCACAGACTTTACTACAAAACCATCCGCGAAGACTTCGACC
TTCCAGCACAGATGGCTATTAACGTAAACAGAGACGTCTCTGCAATGTACAAAACTCTCTGGGCTCAGTTCAAAGAACTCAAGCGCCGCAAACCTGATTC
AAAAGCTGTCAAGAAGTTCTGGGATAAACCACCGAAGCGAAAGAGCTTGATCGTCAAATACACGTACAACCGAACTGCAAGCTTCAAAAAGATCAACGGA
GAGTGGCACGCTTCTTTGTCCACACTTCAAGGTCGAATCAAATGGATCCCGATGAAAGGCTGGTCCAAACACTTTGAGTACCTCAAGTCTTGCAAGATCG
GCGATCCGATACTGACTTACGACAAATCATCCAAAACCTTCTTCTTGCTTGTTCCTGTGACTCTTGAAGTTCAGGAACATCAACCAAAAGAAATCGTCGG
TGTTGACGTTGGAGAAAGACACATTGCTGCTGTTGCTTCTACCAAAGGCACCAGGTATCTGATAGACCTTCCTGAAGAGTTCAAACAAAGAAAACAACAC
TATCAGCGTCTGCGCTCTGAGCTCATGTCAAAAGGCACTCGCTCTGCTAAGAGAAAGCTTGCCAGGATCAGCAGGCGAGAGAAACGGTTCACTGAGAACG
TACTGCACATCATTGCAAAAAAGCTCACCACAAGCCACCCTGGTGCCAGGTTTGTTCTCGAAGACCTGACTCAGATCAGAGCTAACAGAATCACCTACCG
CGGCAAAGACAAAGAAGCAAGAAGACAGTCAGAACAATGGCCGTTTGCAAGTCTTCAGCAAAAGATAGAGTACAAAGCGAAATTGTACTACGGAGTTCAG
TCCGAAAAGGTCGACCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTC
AAAGCTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGCCAAAGACCAGCAGGTCAATCTTGAAAAGCTTTT
AGGGGCCGTTGTCAGCCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCCTTCAGAGGGAGGGTAGCTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
834 bp278 aa5051338+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTVTLTCRFKLELSKDQKQQFLDIATAYTNAVNYVLEQNLKDKSTNVKKLHRLYYKTIREDFDLPAQMAINVNRDVSAMYKTLWAQFKELKRRKPDSKAV
KKFWDKPPKRKSLIVKYTYNRTASFKKINGEWHASLSTLQGRIKWIPMKGWSKHFEYLKSCKIGDPILTYDKSSKTFFLLVPVTLEVQEHQPKEIVGVDV
GERHIAAVASTKGTRYLIDLPEEFKQRKQHYQRLRSELMSKGTRSAKRKLARISRREKRFTENVLHIIAKKLTTSHPGARFVLEDLTQIRANRITYRGKD
KEARRQSEQWPFASLQQKIEYKAKLYYGVQSEKVDPSYTSQTCPRCGHVSKENRPDHGERFVCQSCGYEEHADIVGAINIALRVLAKDQQVNLEKLLGAV
VSRPDAPRLG

 

Blast result :
Comments
ISTma1 is 58% (TnpB) aa similar to ISDge19.
References
1] Singh,R., Gradnigo,J. and Blum,P. (2015) Direct submission GenBank.
2] Nelson,K.E., Clayton,R.A., Gill,S.R., Gwinn,M.L., Dodson,R.J., Haft,D.H., Hickey,E.K., Peterson,J.D., Nelson,W.C., Ketchum,K.A., McDonald,L., Utterback,T.R., Malek,J.A., Linher,K.D., Garrett,M.M.,Stewart,A.M., Cotton,M.D., Pratt,M.S., Phillips,C.A., Richardson,D., Heidelberg,J., Sutton,G.G., Fleischmann,R.D., White,O., Salzberg,S.L., Smith,H.O., Venter,J.C. and Fraser,C.M (1999)Nature 399 (6734), 323-329