ISMex45

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012811 ND Methylobacterium extorquens
Methylobacterium extorquens AM1
DNA section
IS Length : 1270 bp

Ends


Left end : GTTGCTTCCGCAGAGGATCCCGTCCTTCAGGCCGGGGGTGAGTGCGTAGGAGCCGTGATGCGCGGTTGACCCGAGGAACGAACAGGGTACATCGGAGCCA II struct. : Yes
Right end : CGCGCATTCGGGCCGGGACACGGCCTTCGGTCGATAAGCGGGCGGGTTGCCGCGTAGCTCAGGCCGAGAAGCCCCGGCCTTCAGGCTGGGGAGTTGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GACGAACTCCGCAGGCGTTCCGTCtcac

DNA sequence

GTTGCTTCCGCAGAGGATCCCGTCCTTCAGGCCGGGGGTGAGTGCGTAGGAGCCGTGATGCGCGGTTGACCCGAGGAACGAACAGGGTACATCGGAGCCA
TGTCCGATGCCACGCAGGTGCGCAGCTACAAGTATCGGCTTCGACCGAACGCGGCGCAGAGCGCCGCGCTCGATGCCATGCTGCGCGACTTCTGTGGCTT
GCACAATGCCTGCCTCCAACAACGCGACGAGGCATGGCGCAGGCGGCGCAAGCGACTGCGCTACGCCGATCAGGCCGCCGAACTGCGCGGCGCGCGGGCC
GAGGAGCCCACCCTGGCGCGCTGGTCGTTCACTGCCCTGCAGCAGGTCCTGCGTCGGGTCGAGCAGAGCTACGCTGCCTTCCTGTCGGGCAAGCGTGGAC
GACCGCGCTTCCGCGCGGCGGCCCGCTACCACGCCGCGACCTTCCGCGTCGGCGACGGCCTGCGGCTGCGCCCGAATGGGCGCATCACCGTCCTCGGCGT
GCCCGGTGAGATCAAGGCCGTGTGGCACCGGACACTGCCGGCCGATGCCCGGCTCGGCACCGCGATCCTGACCCGCCAGTCTGGCAAATGGCACGTCGTG
CTGTCGGTCGAGGCGACGTTCGCCGCGCCCGACGGCGCGGGCGACGTCGGCGTCGACCTCGGCCTGACCTGCCTGTTCGCGACCTCGGACGGGCACCGCG
AGCCGATCCCGCGCTTCGAACGGCGGGCGCACAAGGCGCAGAGGCGGCGCCAGCGGGCGCTGGCCCGCTGCAAGCGGGGCTCGCGCCGCCGGGCGAAGGC
CAAGCTGCGGCTCGCCGCCGCCTCGGCGCGGATCGCGCGCCAGCGGCGCGATCACGCCCACAAGCTCTCGCATGGACTGGTGGCGGCTTACCGCCGCCTC
GCCTTCGAGGACCTGAACACGGCCGGGCTCAAGCGTTCGCGCTTGGCCCGGTCGATCCACGACGCCGCATGGCGTCAACTCGTCGAGATGTGTCGCTACA
AGGCTTCGAGTGCCGGTGGCGAGGTGCATCTGGTCGATCCCAGGGGCACGTCACAGATGTGCCCCGTCTGCGGGGCGGTCGCGGCCAAGCCGCTCTCGCT
GCGCAGGCACGCCTGCGCCTGTGGGTGTGAGCTCGACCGCGACGTCGCCGCCGCGCAGGTGATCCGAGATCGCGCATTCGGGCCGGGACACGGCCTTCGG
TCGATAAGCGGGCGGGTTGCCGCGTAGCTCAGGCCGAGAAGCCCCGGCCTTCAGGCTGGGGAGTTGTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1128 bp375 aa1001227+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSDATQVRSYKYRLRPNAAQSAALDAMLRDFCGLHNACLQQRDEAWRRRRKRLRYADQAAELRGARAEEPTLARWSFTALQQVLRRVEQSYAAFLSGKRG
RPRFRAAARYHAATFRVGDGLRLRPNGRITVLGVPGEIKAVWHRTLPADARLGTAILTRQSGKWHVVLSVEATFAAPDGAGDVGVDLGLTCLFATSDGHR
EPIPRFERRAHKAQRRRQRALARCKRGSRRRAKAKLRLAAASARIARQRRDHAHKLSHGLVAAYRRLAFEDLNTAGLKRSRLARSIHDAAWRQLVEMCRY
KASSAGGEVHLVDPRGTSQMCPVCGAVAAKPLSLRRHACACGCELDRDVAAAQVIRDRAFGPGHGLRSISGRVAA

 

Blast result :
Comments
ISMex45 is 95% (TnpB) aa similar to ISMex44.
References