ISMex44

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012811 ND Methylobacterium extorquens
Methylobacterium extorquens AM1
DNA section
IS Length : 1270 bp

Ends


Left end : GTTGCTTCCGCAGGGGATCCCGGCCTTCAGGCCGGGGGTGAATGCGGAGGAGCCGTGATGCGCGGTTGACCCTAGGAACGAACCGGGTACATCGGAGCCA II struct. : Yes
Right end : CGCGCATTCGGGCCGGGACACGGCCTTCGGTCGATAAGCGGGCGGGTTGCCGCGTAGCTCAGACCGAGAAGCCCTGGCCTTCAGGCCGGGGAGTTGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCAACTTCCATCAGCATCTTGCCAtcac

DNA sequence

GTTGCTTCCGCAGGGGATCCCGGCCTTCAGGCCGGGGGTGAATGCGGAGGAGCCGTGATGCGCGGTTGACCCTAGGAACGAACCGGGTACATCGGAGCCA
TGTCCGACGCCACGCAGGTGCGCAGCTACAAGTATCGGCTTCGACCGAACGCGCCGCAAAGCGCTGCGCTCGCTGCGATGCTGCGCGACTTCTGCTCCCT
GCACAACGCCTGCCTCCAGCAACGCGACGAGGCATGGCGCAGGCGGCGCAAGCGACTGCGCTACGCCGATCAGGCCGCCGAACTGCGCGGTGTGCGGACC
GAAGAGCCCGCCCTGGCACGCTGGTCGTTCACCGCCCTGCAGCAGGTCCTGCGTAGGGTCGAGCAGAGCTACGCTGCCTTCCTGTCGGGCAAGCGCGGAC
GACCGCGCTTCCGGGCGGCGGCCCGCTACCACGCCGCAACCTTCCGCGTCGGCGACGGCCTGCGGCTGCGCCCGAATGGGCGCATCGCCGTCCTCGGCGT
GCCCGGCGAGATCAAGGCCGTGTGGCACCGGACGCTGCCGCCCGATGCCCGGCTCGGCACCGCGATCCTGACCCGCCAGTCCGGCAAATGGCACGTCGTG
CTGTCGGTCGAGGCGGCGTTCGCCGCGCCCGACAGCACGGGCGACGTCGGCATCGACCTCGGGCTGAGCTGTCTGTTCGCGACCTCGGACGGGCACCGCG
AGCCGATCCCGCGCTTCGAGCGGCGGGCGCACAGGGCACAGAGGCGGCGTCAGCGGGCGCTGGCCCGCTGCAAGCGGGGCTCGCGCCGCCGGGCGAAGGC
CAAGGCGCGGCTCGCCGCTGCCTCGGCGCGGATCGCACGCCAGCGGCGCGATCACGTCCACAAGCTCTCGCATGGACTGGTGGCGGCTCACCGCCGCCTC
GCCTTCGAGGACCTGAACATGGCCGGGCTCAAGCGTTCGCGCTTGGCCCGGTCGATCCACGACGCCGCATGGCGTCAACTCGTCGAGATGTGCCGCTACA
AGGCTTCGAGTGCCGGTGGCGCGGTGCATCTGGTCGATCCCCGAGGGACGTCACAGACGTGCCCCGCCTGTGGGGCTGTCGCGGCCAAGCCGCTCTCGCT
GCGCAGACACATCTGCGCCTGTGGGTGTGACCTCGACCGCGACGTCGCCGCGGCGCAGGTGATCCGAGATCGCGCATTCGGGCCGGGACACGGCCTTCGG
TCGATAAGCGGGCGGGTTGCCGCGTAGCTCAGACCGAGAAGCCCTGGCCTTCAGGCCGGGGAGTTGTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1128 bp375 aa1001227+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSDATQVRSYKYRLRPNAPQSAALAAMLRDFCSLHNACLQQRDEAWRRRRKRLRYADQAAELRGVRTEEPALARWSFTALQQVLRRVEQSYAAFLSGKRG
RPRFRAAARYHAATFRVGDGLRLRPNGRIAVLGVPGEIKAVWHRTLPPDARLGTAILTRQSGKWHVVLSVEAAFAAPDSTGDVGIDLGLSCLFATSDGHR
EPIPRFERRAHRAQRRRQRALARCKRGSRRRAKAKARLAAASARIARQRRDHVHKLSHGLVAAHRRLAFEDLNMAGLKRSRLARSIHDAAWRQLVEMCRY
KASSAGGAVHLVDPRGTSQTCPACGAVAAKPLSLRRHICACGCDLDRDVAAAQVIRDRAFGPGHGLRSISGRVAA

 

Blast result :
Comments
ISMex44 is 51% (TnpB) aa similar to ISSoc5.
References