ISSoc14
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000240 | ND | Synechococcus sp. | Synechococcus sp. JA-2-3B'a(2-13) |
DNA section
IS Length : 1370 bp
Ends
Left end : CAAAAAAACTGGGTTACAAGCCCCGCCCTTCTAGGGCGGCTTTTGTAAGATGCTATTCGACAGAAAAGGCAACTTTGCATGTACCTTGTCCGCAAGCTCA II struct. : Yes
Right end : GCTAACGCGAACAGCCTCATGCCCTGTGTAGCTCAGTTGGTAGGAGCAATTCTGCTGGCTGAGAAAGAATCCCCGTCCTTTAGGGCGGGGGGTATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ATAAAAACGA | TGAC | CCAAAAAGGC | tcaa |
DNA sequence
CAAAAAAACTGGGTTACAAGCCCCGCCCTTCTAGGGCGGCTTTTGTAAGATGCTATTCGACAGAAAAGGCAACTTTGCATGTACCTTGTCCGCAAGCTCA
AGCTAGGCGTCTCAGAGCAACTGCAGCTGTTGAGCAGGGCAGCAGGCGAGCTGTACTCAAAGGTGCTCGTTCACTTTTGGCGGGTTGTCCGCAAGAAGGG
ACTGTGGTTGAAACCTTCCACGCTAATGCGGTGGTTTCCCAACGACCCTGAGAATACACTTCATGCTCACAGTGCAGACGCGGTAGTGCAAAGCTTCTTT
GCCTCTTTGAAGTCCTGGCGAGAACGCCGCCAAACCGACCCCAACGCCCGTCCACCTCGACGGCGTCGGTACTATTCCAAAGTTCAATGGAAGTCTTCAG
CCATCCAAGTCGTCAATGGAAAGCTGCGATTGTCGAACGGGAAAGGCAATGAGCCCCTGATGATTAACTGGGCTTGGGACACACCTGTTTGGGTAGAGAT
GGGCTGGGATGGCCAGCAGTATGAGTTGAGAGCTTGCTACAAGGTGGGGGATACGCTGCCGGAAGAAGAGGGGGAAGAGAGCAACGTTGCCGCTGTGGAT
TTGGGTGAGATTCACCCCGCAGTCGCTCATGAGGGGGGACAAACCTACCTTGCCAATGGCAGGCTGCTGCGCTCCAAAAGGCGCTACCAGAACAAGCTGC
AGGGCAAGCTAGCTCGACTCCTGGCGCGCAAAAAGCGGGGTTCTCGGCGGTGGAAGCGGCTAATCCGTTCCAATCGCGTGAGCGGGACGGAGTCCTTACG
CCTGCAGCTCAAGAAGCTACACCACCAAATCCAAGACATTCTGCACAAGCAGACGACCAGACTGGTCTCCACGCTCCACGAGCGAGGCGTGCAGACAGTT
GTGATTGGCGACATTCGGGATATCCGGATGTCTGCCAACTACAACAAGAAAGCGAATCAGAAGATCCACCAGATGTTGCATGGTCAAGCTCGGCACCAAA
TCACTTACAAGGCCGAACGGCTGGGGATGAAGGTTGTGCTGCAGGATGAGCAGTACAGCTCTCAGGAGTGTCCTGTTTGTGGGCAGAGAAACAAGCCCAA
AGGTCGTGTGTACAGGTGTGGGTGTGGGTTTGAGTTCCATCGGGACGGGGTGGGTGCAATTAACATTGTTGCTACGCAACGCTAACGCGAACGCAGGAAG
TATCTGGGCTCCGGCCCAGTAGTTGGGGTTATGGCATCCCCCATAGGGTTGAGGTTGAGGACTCCGTCCCGCTAACGCGAACAGCCTCATGCCCTGTGTA
GCTCAGTTGGTAGGAGCAATTCTGCTGGCTGAGAAAGAATCCCCGTCCTTTAGGGCGGGGGGTATGTCAA
AGCTAGGCGTCTCAGAGCAACTGCAGCTGTTGAGCAGGGCAGCAGGCGAGCTGTACTCAAAGGTGCTCGTTCACTTTTGGCGGGTTGTCCGCAAGAAGGG
ACTGTGGTTGAAACCTTCCACGCTAATGCGGTGGTTTCCCAACGACCCTGAGAATACACTTCATGCTCACAGTGCAGACGCGGTAGTGCAAAGCTTCTTT
GCCTCTTTGAAGTCCTGGCGAGAACGCCGCCAAACCGACCCCAACGCCCGTCCACCTCGACGGCGTCGGTACTATTCCAAAGTTCAATGGAAGTCTTCAG
CCATCCAAGTCGTCAATGGAAAGCTGCGATTGTCGAACGGGAAAGGCAATGAGCCCCTGATGATTAACTGGGCTTGGGACACACCTGTTTGGGTAGAGAT
GGGCTGGGATGGCCAGCAGTATGAGTTGAGAGCTTGCTACAAGGTGGGGGATACGCTGCCGGAAGAAGAGGGGGAAGAGAGCAACGTTGCCGCTGTGGAT
TTGGGTGAGATTCACCCCGCAGTCGCTCATGAGGGGGGACAAACCTACCTTGCCAATGGCAGGCTGCTGCGCTCCAAAAGGCGCTACCAGAACAAGCTGC
AGGGCAAGCTAGCTCGACTCCTGGCGCGCAAAAAGCGGGGTTCTCGGCGGTGGAAGCGGCTAATCCGTTCCAATCGCGTGAGCGGGACGGAGTCCTTACG
CCTGCAGCTCAAGAAGCTACACCACCAAATCCAAGACATTCTGCACAAGCAGACGACCAGACTGGTCTCCACGCTCCACGAGCGAGGCGTGCAGACAGTT
GTGATTGGCGACATTCGGGATATCCGGATGTCTGCCAACTACAACAAGAAAGCGAATCAGAAGATCCACCAGATGTTGCATGGTCAAGCTCGGCACCAAA
TCACTTACAAGGCCGAACGGCTGGGGATGAAGGTTGTGCTGCAGGATGAGCAGTACAGCTCTCAGGAGTGTCCTGTTTGTGGGCAGAGAAACAAGCCCAA
AGGTCGTGTGTACAGGTGTGGGTGTGGGTTTGAGTTCCATCGGGACGGGGTGGGTGCAATTAACATTGTTGCTACGCAACGCTAACGCGAACGCAGGAAG
TATCTGGGCTCCGGCCCAGTAGTTGGGGTTATGGCATCCCCCATAGGGTTGAGGTTGAGGACTCCGTCCCGCTAACGCGAACAGCCTCATGCCCTGTGTA
GCTCAGTTGGTAGGAGCAATTCTGCTGGCTGAGAAAGAATCCCCGTCCTTTAGGGCGGGGGGTATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1107 bp | 368 aa | 79 | 1185 | + | No |
AG : TnpB
ORF sequence :
MYLVRKLKLGVSEQLQLLSRAAGELYSKVLVHFWRVVRKKGLWLKPSTLMRWFPNDPENTLHAHSADAVVQSFFASLKSWRERRQTDPNARPPRRRRYYS
KVQWKSSAIQVVNGKLRLSNGKGNEPLMINWAWDTPVWVEMGWDGQQYELRACYKVGDTLPEEEGEESNVAAVDLGEIHPAVAHEGGQTYLANGRLLRSK
RRYQNKLQGKLARLLARKKRGSRRWKRLIRSNRVSGTESLRLQLKKLHHQIQDILHKQTTRLVSTLHERGVQTVVIGDIRDIRMSANYNKKANQKIHQML
HGQARHQITYKAERLGMKVVLQDEQYSSQECPVCGQRNKPKGRVYRCGCGFEFHRDGVGAINIVATQR
KVQWKSSAIQVVNGKLRLSNGKGNEPLMINWAWDTPVWVEMGWDGQQYELRACYKVGDTLPEEEGEESNVAAVDLGEIHPAVAHEGGQTYLANGRLLRSK
RRYQNKLQGKLARLLARKKRGSRRWKRLIRSNRVSGTESLRLQLKKLHHQIQDILHKQTTRLVSTLHERGVQTVVIGDIRDIRMSANYNKKANQKIHQML
HGQARHQITYKAERLGMKVVLQDEQYSSQECPVCGQRNKPKGRVYRCGCGFEFHRDGVGAINIVATQR
Blast result :
Comments
ISSoc14 is 44% (TnpB) aa similar to ISHtu3.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.