ISSoc14

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000240 ND Synechococcus sp.
Synechococcus sp. JA-2-3B'a(2-13)
DNA section
IS Length : 1370 bp

Ends


Left end : CAAAAAAACTGGGTTACAAGCCCCGCCCTTCTAGGGCGGCTTTTGTAAGATGCTATTCGACAGAAAAGGCAACTTTGCATGTACCTTGTCCGCAAGCTCA II struct. : Yes
Right end : GCTAACGCGAACAGCCTCATGCCCTGTGTAGCTCAGTTGGTAGGAGCAATTCTGCTGGCTGAGAAAGAATCCCCGTCCTTTAGGGCGGGGGGTATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ATAAAAACGATGACCCAAAAAGGCtcaa

DNA sequence

CAAAAAAACTGGGTTACAAGCCCCGCCCTTCTAGGGCGGCTTTTGTAAGATGCTATTCGACAGAAAAGGCAACTTTGCATGTACCTTGTCCGCAAGCTCA
AGCTAGGCGTCTCAGAGCAACTGCAGCTGTTGAGCAGGGCAGCAGGCGAGCTGTACTCAAAGGTGCTCGTTCACTTTTGGCGGGTTGTCCGCAAGAAGGG
ACTGTGGTTGAAACCTTCCACGCTAATGCGGTGGTTTCCCAACGACCCTGAGAATACACTTCATGCTCACAGTGCAGACGCGGTAGTGCAAAGCTTCTTT
GCCTCTTTGAAGTCCTGGCGAGAACGCCGCCAAACCGACCCCAACGCCCGTCCACCTCGACGGCGTCGGTACTATTCCAAAGTTCAATGGAAGTCTTCAG
CCATCCAAGTCGTCAATGGAAAGCTGCGATTGTCGAACGGGAAAGGCAATGAGCCCCTGATGATTAACTGGGCTTGGGACACACCTGTTTGGGTAGAGAT
GGGCTGGGATGGCCAGCAGTATGAGTTGAGAGCTTGCTACAAGGTGGGGGATACGCTGCCGGAAGAAGAGGGGGAAGAGAGCAACGTTGCCGCTGTGGAT
TTGGGTGAGATTCACCCCGCAGTCGCTCATGAGGGGGGACAAACCTACCTTGCCAATGGCAGGCTGCTGCGCTCCAAAAGGCGCTACCAGAACAAGCTGC
AGGGCAAGCTAGCTCGACTCCTGGCGCGCAAAAAGCGGGGTTCTCGGCGGTGGAAGCGGCTAATCCGTTCCAATCGCGTGAGCGGGACGGAGTCCTTACG
CCTGCAGCTCAAGAAGCTACACCACCAAATCCAAGACATTCTGCACAAGCAGACGACCAGACTGGTCTCCACGCTCCACGAGCGAGGCGTGCAGACAGTT
GTGATTGGCGACATTCGGGATATCCGGATGTCTGCCAACTACAACAAGAAAGCGAATCAGAAGATCCACCAGATGTTGCATGGTCAAGCTCGGCACCAAA
TCACTTACAAGGCCGAACGGCTGGGGATGAAGGTTGTGCTGCAGGATGAGCAGTACAGCTCTCAGGAGTGTCCTGTTTGTGGGCAGAGAAACAAGCCCAA
AGGTCGTGTGTACAGGTGTGGGTGTGGGTTTGAGTTCCATCGGGACGGGGTGGGTGCAATTAACATTGTTGCTACGCAACGCTAACGCGAACGCAGGAAG
TATCTGGGCTCCGGCCCAGTAGTTGGGGTTATGGCATCCCCCATAGGGTTGAGGTTGAGGACTCCGTCCCGCTAACGCGAACAGCCTCATGCCCTGTGTA
GCTCAGTTGGTAGGAGCAATTCTGCTGGCTGAGAAAGAATCCCCGTCCTTTAGGGCGGGGGGTATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1107 bp368 aa791185+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MYLVRKLKLGVSEQLQLLSRAAGELYSKVLVHFWRVVRKKGLWLKPSTLMRWFPNDPENTLHAHSADAVVQSFFASLKSWRERRQTDPNARPPRRRRYYS
KVQWKSSAIQVVNGKLRLSNGKGNEPLMINWAWDTPVWVEMGWDGQQYELRACYKVGDTLPEEEGEESNVAAVDLGEIHPAVAHEGGQTYLANGRLLRSK
RRYQNKLQGKLARLLARKKRGSRRWKRLIRSNRVSGTESLRLQLKKLHHQIQDILHKQTTRLVSTLHERGVQTVVIGDIRDIRMSANYNKKANQKIHQML
HGQARHQITYKAERLGMKVVLQDEQYSSQECPVCGQRNKPKGRVYRCGCGFEFHRDGVGAINIVATQR

 

Blast result :
Comments
ISSoc14 is 44% (TnpB) aa similar to ISHtu3.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.