ISSoc12
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000240 | ND | Synechococcus sp. | Synechococcus sp. JA-2-3B'a(2-13) |
DNA section
IS Length : 1442 bp
Ends
Left end : ACAAAGGAGGGGCGCGGGGAGCTATAAGTCCCGCGCTGTATGCAAAGCATCAGCGTCGGGATACATGGACTCCCCGCACTTGTCGATTCTCTCGATGGGA II struct. : Yes
Right end : GGGTCTATGACCTAGATAAGTGGCGTGGGGCAGGAATGCCTAACCGTGAGGTTAGGAAGCCCGCGCTGTACCCGTAGGGTCAGCGTCGGGAGGATGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTTTTCTCTC | TTTA | TCTCTGCTTC | tcac |
DNA sequence
ACAAAGGAGGGGCGCGGGGAGCTATAAGTCCCGCGCTGTATGCAAAGCATCAGCGTCGGGATACATGGACTCCCCGCACTTGTCGATTCTCTCGATGGGA
TAAGACAAGTATTTACCAGCAGCTATAGCTTGTGGTAAACTGCCACTATGCTGACCATGAACTACACTTACCGGATCTATCCAGATGCCGCGCAGCAGGC
CAAGCTGCGGTCGTGGCTTGAGACGTGCAGAGGCGTGTACAACTACGCTTTGCGCGAACTCAAAGACTGGATTGCTTCCCGTAAGTGTCCCATAGACAGA
TGCTCACTGGAGAAGGAGTACATCATTCCTGCCGATGAGCCATTCCCGTCTTATCATCGTCAGCAAAATAACCTACCCAAAGCAAAGAAGCAATTCCCGC
ATTTGGCCAAGGTGCATTCTCAGGTCTTGCAGGCTACGATTCGCAGGCTGCATGATACTTGGGAGGCATTCCAGAAGCGGGGATATGGGTTTCCCCGTTT
CAAGAAACAAGGCCAATTTAAGTCTTTTGTGTTTCCCCAGTTCAAGGACAATCCCATCTCCGGCAGCAGTATCAAGCTACCAAAGATAGGAAAAGTGCCT
ATCAACTTGCATCGTCCTATCCCAGATGGGTTCAAGGTCAAGCAGGTGAGGGTACTGTCCAAGGTAAGAGGGACGCAATGGTATGTCGTCGTTACCATCG
AATCGGACATATCGGTTCCCGATGCTCCGGTTCACGGTCGTGCGATTGGGATTGATCTGGGATTGGAACGGTTTTTGACGGTTTCAGATGGTAGCTTCCA
GGAGCGACCCAAGTTTTTTAGGTCGATGCAACGCAAGCTGAAATTGCTGCAACGCAGAGCGGCACGAAAACAGAAGGGGTCACGAAACTGGGAGAAGGCA
CAAATCAAAGTTGCCAGAATGCACCATCGGATTGCGAACCGTCGTAAAGATTTCCACCTGAAGACGGCTCATAAGCTTTGTGACCAAGCGCAAACCATCT
TTGCAGAAGACCTCAATGTCACAGGCTTGACACGGGGAATGCTGCGAAAAGGTTGTGTTGATGCCGCCTTTGGACAATTTCTGTCTCTGTTGGAATGGGT
GTGCTGGAAACGTGGAGTGTACTTCGCTAAAGTCAACTCCAACGGGACTAGCCAAACCTGTCCCAAATGTTTTGCTACTGTCAGCAAAACGTTGACAGCA
AGGGAGCATCATTGTCCTGAGTGTGGGTATCGAACTCATCGTGACCATGCAGCAGCAGAAATGGTTTTGCATCGTGGACTAGAGAATGTAGTAGCCCAGG
GACTCTGGGGAACGGAAACAGCCTGCCAAGTCGTTCTGTCGGGGGTCTATGACCTAGATAAGTGGCGTGGGGCAGGAATGCCTAACCGTGAGGTTAGGAA
GCCCGCGCTGTACCCGTAGGGTCAGCGTCGGGAGGATGTCAC
TAAGACAAGTATTTACCAGCAGCTATAGCTTGTGGTAAACTGCCACTATGCTGACCATGAACTACACTTACCGGATCTATCCAGATGCCGCGCAGCAGGC
CAAGCTGCGGTCGTGGCTTGAGACGTGCAGAGGCGTGTACAACTACGCTTTGCGCGAACTCAAAGACTGGATTGCTTCCCGTAAGTGTCCCATAGACAGA
TGCTCACTGGAGAAGGAGTACATCATTCCTGCCGATGAGCCATTCCCGTCTTATCATCGTCAGCAAAATAACCTACCCAAAGCAAAGAAGCAATTCCCGC
ATTTGGCCAAGGTGCATTCTCAGGTCTTGCAGGCTACGATTCGCAGGCTGCATGATACTTGGGAGGCATTCCAGAAGCGGGGATATGGGTTTCCCCGTTT
CAAGAAACAAGGCCAATTTAAGTCTTTTGTGTTTCCCCAGTTCAAGGACAATCCCATCTCCGGCAGCAGTATCAAGCTACCAAAGATAGGAAAAGTGCCT
ATCAACTTGCATCGTCCTATCCCAGATGGGTTCAAGGTCAAGCAGGTGAGGGTACTGTCCAAGGTAAGAGGGACGCAATGGTATGTCGTCGTTACCATCG
AATCGGACATATCGGTTCCCGATGCTCCGGTTCACGGTCGTGCGATTGGGATTGATCTGGGATTGGAACGGTTTTTGACGGTTTCAGATGGTAGCTTCCA
GGAGCGACCCAAGTTTTTTAGGTCGATGCAACGCAAGCTGAAATTGCTGCAACGCAGAGCGGCACGAAAACAGAAGGGGTCACGAAACTGGGAGAAGGCA
CAAATCAAAGTTGCCAGAATGCACCATCGGATTGCGAACCGTCGTAAAGATTTCCACCTGAAGACGGCTCATAAGCTTTGTGACCAAGCGCAAACCATCT
TTGCAGAAGACCTCAATGTCACAGGCTTGACACGGGGAATGCTGCGAAAAGGTTGTGTTGATGCCGCCTTTGGACAATTTCTGTCTCTGTTGGAATGGGT
GTGCTGGAAACGTGGAGTGTACTTCGCTAAAGTCAACTCCAACGGGACTAGCCAAACCTGTCCCAAATGTTTTGCTACTGTCAGCAAAACGTTGACAGCA
AGGGAGCATCATTGTCCTGAGTGTGGGTATCGAACTCATCGTGACCATGCAGCAGCAGAAATGGTTTTGCATCGTGGACTAGAGAATGTAGTAGCCCAGG
GACTCTGGGGAACGGAAACAGCCTGCCAAGTCGTTCTGTCGGGGGTCTATGACCTAGATAAGTGGCGTGGGGCAGGAATGCCTAACCGTGAGGTTAGGAA
GCCCGCGCTGTACCCGTAGGGTCAGCGTCGGGAGGATGTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1263 bp | 420 aa | 157 | 1419 | + | No |
AG : TnpB
ORF sequence :
MNYTYRIYPDAAQQAKLRSWLETCRGVYNYALRELKDWIASRKCPIDRCSLEKEYIIPADEPFPSYHRQQNNLPKAKKQFPHLAKVHSQVLQATIRRLHD
TWEAFQKRGYGFPRFKKQGQFKSFVFPQFKDNPISGSSIKLPKIGKVPINLHRPIPDGFKVKQVRVLSKVRGTQWYVVVTIESDISVPDAPVHGRAIGID
LGLERFLTVSDGSFQERPKFFRSMQRKLKLLQRRAARKQKGSRNWEKAQIKVARMHHRIANRRKDFHLKTAHKLCDQAQTIFAEDLNVTGLTRGMLRKGC
VDAAFGQFLSLLEWVCWKRGVYFAKVNSNGTSQTCPKCFATVSKTLTAREHHCPECGYRTHRDHAAAEMVLHRGLENVVAQGLWGTETACQVVLSGVYDL
DKWRGAGMPNREVRKPALYP
TWEAFQKRGYGFPRFKKQGQFKSFVFPQFKDNPISGSSIKLPKIGKVPINLHRPIPDGFKVKQVRVLSKVRGTQWYVVVTIESDISVPDAPVHGRAIGID
LGLERFLTVSDGSFQERPKFFRSMQRKLKLLQRRAARKQKGSRNWEKAQIKVARMHHRIANRRKDFHLKTAHKLCDQAQTIFAEDLNVTGLTRGMLRKGC
VDAAFGQFLSLLEWVCWKRGVYFAKVNSNGTSQTCPKCFATVSKTLTAREHHCPECGYRTHRDHAAAEMVLHRGLENVVAQGLWGTETACQVVLSGVYDL
DKWRGAGMPNREVRKPALYP
Blast result :
Comments
ISSoc12 is 63% (TnpB) aa similar to ISSs1.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.