ISSoc12

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000240 ND Synechococcus sp.
Synechococcus sp. JA-2-3B'a(2-13)
DNA section
IS Length : 1442 bp

Ends


Left end : ACAAAGGAGGGGCGCGGGGAGCTATAAGTCCCGCGCTGTATGCAAAGCATCAGCGTCGGGATACATGGACTCCCCGCACTTGTCGATTCTCTCGATGGGA II struct. : Yes
Right end : GGGTCTATGACCTAGATAAGTGGCGTGGGGCAGGAATGCCTAACCGTGAGGTTAGGAAGCCCGCGCTGTACCCGTAGGGTCAGCGTCGGGAGGATGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTTTTCTCTCTTTATCTCTGCTTCtcac

DNA sequence

ACAAAGGAGGGGCGCGGGGAGCTATAAGTCCCGCGCTGTATGCAAAGCATCAGCGTCGGGATACATGGACTCCCCGCACTTGTCGATTCTCTCGATGGGA
TAAGACAAGTATTTACCAGCAGCTATAGCTTGTGGTAAACTGCCACTATGCTGACCATGAACTACACTTACCGGATCTATCCAGATGCCGCGCAGCAGGC
CAAGCTGCGGTCGTGGCTTGAGACGTGCAGAGGCGTGTACAACTACGCTTTGCGCGAACTCAAAGACTGGATTGCTTCCCGTAAGTGTCCCATAGACAGA
TGCTCACTGGAGAAGGAGTACATCATTCCTGCCGATGAGCCATTCCCGTCTTATCATCGTCAGCAAAATAACCTACCCAAAGCAAAGAAGCAATTCCCGC
ATTTGGCCAAGGTGCATTCTCAGGTCTTGCAGGCTACGATTCGCAGGCTGCATGATACTTGGGAGGCATTCCAGAAGCGGGGATATGGGTTTCCCCGTTT
CAAGAAACAAGGCCAATTTAAGTCTTTTGTGTTTCCCCAGTTCAAGGACAATCCCATCTCCGGCAGCAGTATCAAGCTACCAAAGATAGGAAAAGTGCCT
ATCAACTTGCATCGTCCTATCCCAGATGGGTTCAAGGTCAAGCAGGTGAGGGTACTGTCCAAGGTAAGAGGGACGCAATGGTATGTCGTCGTTACCATCG
AATCGGACATATCGGTTCCCGATGCTCCGGTTCACGGTCGTGCGATTGGGATTGATCTGGGATTGGAACGGTTTTTGACGGTTTCAGATGGTAGCTTCCA
GGAGCGACCCAAGTTTTTTAGGTCGATGCAACGCAAGCTGAAATTGCTGCAACGCAGAGCGGCACGAAAACAGAAGGGGTCACGAAACTGGGAGAAGGCA
CAAATCAAAGTTGCCAGAATGCACCATCGGATTGCGAACCGTCGTAAAGATTTCCACCTGAAGACGGCTCATAAGCTTTGTGACCAAGCGCAAACCATCT
TTGCAGAAGACCTCAATGTCACAGGCTTGACACGGGGAATGCTGCGAAAAGGTTGTGTTGATGCCGCCTTTGGACAATTTCTGTCTCTGTTGGAATGGGT
GTGCTGGAAACGTGGAGTGTACTTCGCTAAAGTCAACTCCAACGGGACTAGCCAAACCTGTCCCAAATGTTTTGCTACTGTCAGCAAAACGTTGACAGCA
AGGGAGCATCATTGTCCTGAGTGTGGGTATCGAACTCATCGTGACCATGCAGCAGCAGAAATGGTTTTGCATCGTGGACTAGAGAATGTAGTAGCCCAGG
GACTCTGGGGAACGGAAACAGCCTGCCAAGTCGTTCTGTCGGGGGTCTATGACCTAGATAAGTGGCGTGGGGCAGGAATGCCTAACCGTGAGGTTAGGAA
GCCCGCGCTGTACCCGTAGGGTCAGCGTCGGGAGGATGTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1263 bp420 aa1571419+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MNYTYRIYPDAAQQAKLRSWLETCRGVYNYALRELKDWIASRKCPIDRCSLEKEYIIPADEPFPSYHRQQNNLPKAKKQFPHLAKVHSQVLQATIRRLHD
TWEAFQKRGYGFPRFKKQGQFKSFVFPQFKDNPISGSSIKLPKIGKVPINLHRPIPDGFKVKQVRVLSKVRGTQWYVVVTIESDISVPDAPVHGRAIGID
LGLERFLTVSDGSFQERPKFFRSMQRKLKLLQRRAARKQKGSRNWEKAQIKVARMHHRIANRRKDFHLKTAHKLCDQAQTIFAEDLNVTGLTRGMLRKGC
VDAAFGQFLSLLEWVCWKRGVYFAKVNSNGTSQTCPKCFATVSKTLTAREHHCPECGYRTHRDHAAAEMVLHRGLENVVAQGLWGTETACQVVLSGVYDL
DKWRGAGMPNREVRKPALYP

 

Blast result :
Comments
ISSoc12 is 63% (TnpB) aa similar to ISSs1.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.