ISSoc10

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000240 ND Synechococcus sp.
Synechococcus sp. JA-2-3B'a(2-13)
DNA section
IS Length : 1829 bp

Ends


Left end : CTAAACCGCCGAGAAGCCCCGCCCTCTGTCCGTAGGACGTATGGCCTACGGCCCGCTGAAGCGAACGTGCTAGCGGCGCGGAGCGCTTGGGTCGGGATGA II struct. : Yes
Right end : CTCAGGAAACGTCCTTCACAGGAGTCACTGAGAAGCCCGCACTCTTTCGCTTTAGCGGCGCGGAGCGCTTTGCGTCAGCATGAGTGCGGGAGTATGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AAAGATCTCCTTAGACCGCAAAATtcac

DNA sequence

CTAAACCGCCGAGAAGCCCCGCCCTCTGTCCGTAGGACGTATGGCCTACGGCCCGCTGAAGCGAACGTGCTAGCGGCGCGGAGCGCTTGGGTCGGGATGA
GAGGCGGGAGTACCTTGGCTTTCAATGTACTGGCTCAATGCCGAGACTGTTACCCCACCACATGAAGCGATGAAATAAGATTCATTCCACAGCACATTTT
TCCGGTATATCTTGCTGATGTAATCCGCAAACTCGCTTCTCATCCTGCGACTAGAGACGGATTTGATGTTGTTTACCAATTTGGACAGATCCACCTGCGG
GTAGTACTGGAACAGCAGATGAACATGGTCTGCCTCGCCGTTGAACTCAATAAGTTTGCAACCCCACTTTTGGCAAAGGTCATACATAACTTCATGTAAT
CGCTGCAGCATTTCGCTGGTAAATACCTTGCGACGGTACTTGGTGGTTAAGACCAAGTGCGCCTTCAAATCAGATACAGCTCTGCCGCTGGAAACAAAAT
CATGCTTCATGGTCGCTAATCCCTGCTGGCGCTATAATCAGTGTAGCGGTTTCTGAGTACGCTTAAGATGAGGACTGCCTATCAGTACCGCCTGCGGCCT
ACGCCCAGTCAAGTTGTCCTGATGGAGCAATGGCTGGAGCTGTTGCGCAAGCAGTACAACTATCGGTTGGCAGAGCGGCTTAACTGGTGGGAACAAAACC
GCTGTAATATAAACGCCTGCCCCTTAATCTGTCATTTGCCTGAGCTGAAAGACAGGCCGGATGTCTACTCCCAAAAACGAGACTTGGTGAATACCAAAGT
AAGGTTCCCCGAATACCAAGCAATCCATTCGCAAGTCCTGCAAAACTGCATAGAGCGGGTGCACAAAGCATTCGACCGCTGGCTGAAAGGCGACCGTAAC
GGCAAGAGGGCAGGAAGGCCGAGATTCAAAGGGGCGGGCCGGTATCGTTCCTTCACCTTTCCCCAGATGAAGCAGGACTGCATTCAAGGGAAGTTTATTC
ATCTGCCCAAAATCGGAGCAATTAAGCTGATTCAGCACCGTCCGTTGCCTGACGGGTTTGTTATCAAGACTGCCACCATCACCCGTAAGGCTGATGGATG
GTATGTGACATTAAGCCTGCAAGATGCGTCCGTCCCCGAGTTTGCTCCTGAGCCTGCAACACTGGAGAACACGATAGGGATCGACATGGGGCTGGACTCC
TTTTTGGTGACTGATACAGGGGAGTCCGTCCCAGTGCCCCAGTATTACCGCCGCGCCCAAAAGCGCCTGGAGAGGCTGCAGCGGTCATTATCCCGTAAGC
AGAAAGGGTCAAACCGCCGCAAGAAAGCCTTAGGGCGAGTGGCTAAGGCACACCTCAAGGTGGCCAATCAGCGTAAAGATTTCCACTACAAAGTAGCCAA
GAAGCTAGTAAGCAAAGGGAAGCATATTGCGTATGAGGCGCTCAACACCAAAGGTATTGCGAGAACCCGACTAGCGAAATCCATCTATGACGCTGGGTGG
GGGCAATTCCTGCAAATTCTCGCAGTCAAGGCTGAAAGAGCTGGGCTGAGGGCGATTGCAGTGGATCCAAGAGGCACGAGCCAAGACTGTTCTCAGTGCG
GTCAAAAAGTACCGAAAACCATTCGAGACAGATGGCATTCTTGCCCGCATTGTGGACTGGAACTAGGCCGAGACCACAACGCGGCGATAAACATCAAATA
CAGAGCGGTGGGGCATCCCGTTCTCAAAGCTCAGGAAACGTCCTTCACAGGAGTCACTGAGAAGCCCGCACTCTTTCGCTTTAGCGGCGCGGAGCGCTTT
GCGTCAGCATGAGTGCGGGAGTATGTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
441 bp146 aa51070-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MKHDFVSSGRAVSDLKAHLVLTTKYRRKVFTSEMLQRLHEVMYDLCQKWGCKLIEFNGEADHVHLLFQYYPQVDLSKLVNNIKSVSSRRMRSEFADYISK
IYRKNVLWNESYFIASCGGVTVSALSQYIESQGTPASHPDPSAPRR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1304 bp414 aa5091812+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MRTAYQYRLRPTPSQVVLMEQWLELLRKQYNYRLAERLNWWEQNRCNINACPLICHLPELKDRPDVYSQKRDLVNTKVRFPEYQAIHSQVLQNCIERVHK
AFDRWLKGDRNGKRAGRPRFKGAGRYRSFTFPQMKQDCIQGKFIHLPKIGAIKLIQHRPLPDGFVIKTATITRKADGWYVTLSLQDASVPEFAPEPATLE
NTIGIDMGLDSFLVTDTGESVPVPQYYRRAQKRLERLQRSLSRKQKGSNRRKKALGRVAKAHLKVANQRKDFHYKVAKKLVSKGKHIAYEALNTKGIART
RLAKSIYDAGWGQFLQILAVKAERAGLRAIAVDPRGTSQDCSQCGQKVPKTIRDRWHSCPHCGLELGRDHNAAINIKYRAVGHPVLKAQETSFTGVTEKP
ALFRFSGAERFASA

 

Blast result :
Comments
ISSoc10 is 73% (TnpA : the transposase) aa similar to ISSoc3 and 73% (TnpB) aa similar to ISSoc3.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.