ISSoc9
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000240 | ND | Synechococcus sp. | Synechococcus sp. JA-2-3B'a(2-13) |
DNA section
IS Length : 1514 bp
Ends
Left end : CAAAAGGCGCGGCAAGCCCCGTCCTTCAGGGCAGGGAAGGATAGCGCCGACCGTAGCCGACGCCCTTTAAAAACGCAGTGCCGGCCATGTGAATATCGTT II struct. : Yes
Right end : GGGCGGTCGGAAGCAGGAACCCGCCGAGACGACTGCGCAAGGAGCCATCCATGCGTAGCGTGGTAGGAATCTCCAGCCTTCAGGCCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AAACACCGAC | TGAC | GATTCCCGTT | TCAA |
GCAGCTGTAT | TGAC | TTGCAGAGAG | TCAA |
GGGATCCCAT | TGAC | TGCTTGTTTC | TCAA |
GGCGATCCCC | TGAC | AAGACCTCAG | TCAA |
TGTCTTGAGT | TGAC | TTTCCCAGTT | TCAA |
TCCGCACCGC | TGAC | CGCCTTCCGC | TCAA |
TTCAGAAACT | TGAC | GGTATTCTGT | TCAA |
DNA sequence
CAAAAGGCGCGGCAAGCCCCGTCCTTCAGGGCAGGGAAGGATAGCGCCGACCGTAGCCGACGCCCTTTAAAAACGCAGTGCCGGCCATGTGAATATCGTT
GTCATCACGCATAGGTCAAGAATACGATTGAGCGGTGCAACGACTTCAAGCCTTCAAGTACGAATTGCTGCCCAACGGCCAGCAGGAACGGCAGATGCGC
CGCTTTGCTGGCTCCTGCCGGTTCGTCTACAACAAAGCACTGGCGTTGCAGAAGGAGCGTCACGAGCAAGGTCAGAAAAAGCTAGGCTATGCGGGCCTGT
GCCAGCTGCTCACCGCGTGGCGCCACAGCGCAGATACGGCGTGGCTGGCGGATGCGCCGGTGCATCCGCTGCAACAGGCGCTCCAGGATTTGGAGCGAGC
CTACAGCCACTTCTTCGCCCAGCGCGCCGGCTTCCCGAAGTTCAAGAAAAAAGGCCGGTCGGACAGTTTCCGTTATCCCGACCCCAAGCAAATCCAGCTG
GACCAGGCCAACAGCCGCATCTTTCTGCCCAAACTTGGCTGGCTGCGTTATCGCAACAGCCGCGACGTGGTGGGCAAGGTCAAGAGCGTCACCGTATCCA
AGCACGCTGGCAAGTGGTTCGTGTCGATTCAGACCGAGCGGGAGGTTAATTGGCCTATTCCGCAGGGGGGCGCAGTGGGCATGGACATGGGCATTGCCCG
CTTGGCTACCCTCTCGGACGGCACGTTCTACGCGCCCCTCAACAGCTTCAAGCGGCACGAGGCGCGCTTGCGCAAGGCCCAGCAAGCGCTCTCCCGCAAA
GTCAAGTTCAGCAACAACTGGAAGAAGGCAAAAGCCCGCCTCCAGCGTATTCATTCTCAGATGGCCAACGCCCGCCGCGACTTCCTGCACAAGGTCTCGA
CCGCGATTTGCAAAAGCCAGGCAATCGTGTGCATCGAGGACTTGCGGGTGCGGAATATGTCCAAGTTGGCGGCAGGGACAGCAGATGCTCCTGGGAAGAA
CGTCCGCGCCAAGTCAGCGTTAAACAAAGCCATTCTCGACCAGGGGTGGTATGAGTTCCGCTGCATGCTGGAGTACAAGCTGGCCTGGAAAGGTGGCAGG
CTCATTGTCGTGCCGCCGCAGAACCCGAGCCGCACCTGTCCATGTTGCGGCCATGTTTCATCAGACAACCGCCAGACCCAAGCCTGGTTCGAGTGCGTGG
CGTGCGGCTATGAGAATAACGCCGATCGCGGCAGCGGGCCGGAGGCCTTTCGCGGCAGCGGGCCGGAGGCCTTTCTGGTCGGTGCCATCAACATCCTTGC
TCGCGGGATACAGCTGTTGCGAGACGAAGGGCAGGACACGGCCGACGCTGCGGTCGGGATGCGGGTGGGTGAACCACCCGTGTCAGCCCGGATGGCCTGT
GGATCGAACTGCACGGGCGGTCGGAAGCAGGAACCCGCCGAGACGACTGCGCAAGGAGCCATCCATGCGTAGCGTGGTAGGAATCTCCAGCCTTCAGGCC
GGGGAGGATGTCAA
GTCATCACGCATAGGTCAAGAATACGATTGAGCGGTGCAACGACTTCAAGCCTTCAAGTACGAATTGCTGCCCAACGGCCAGCAGGAACGGCAGATGCGC
CGCTTTGCTGGCTCCTGCCGGTTCGTCTACAACAAAGCACTGGCGTTGCAGAAGGAGCGTCACGAGCAAGGTCAGAAAAAGCTAGGCTATGCGGGCCTGT
GCCAGCTGCTCACCGCGTGGCGCCACAGCGCAGATACGGCGTGGCTGGCGGATGCGCCGGTGCATCCGCTGCAACAGGCGCTCCAGGATTTGGAGCGAGC
CTACAGCCACTTCTTCGCCCAGCGCGCCGGCTTCCCGAAGTTCAAGAAAAAAGGCCGGTCGGACAGTTTCCGTTATCCCGACCCCAAGCAAATCCAGCTG
GACCAGGCCAACAGCCGCATCTTTCTGCCCAAACTTGGCTGGCTGCGTTATCGCAACAGCCGCGACGTGGTGGGCAAGGTCAAGAGCGTCACCGTATCCA
AGCACGCTGGCAAGTGGTTCGTGTCGATTCAGACCGAGCGGGAGGTTAATTGGCCTATTCCGCAGGGGGGCGCAGTGGGCATGGACATGGGCATTGCCCG
CTTGGCTACCCTCTCGGACGGCACGTTCTACGCGCCCCTCAACAGCTTCAAGCGGCACGAGGCGCGCTTGCGCAAGGCCCAGCAAGCGCTCTCCCGCAAA
GTCAAGTTCAGCAACAACTGGAAGAAGGCAAAAGCCCGCCTCCAGCGTATTCATTCTCAGATGGCCAACGCCCGCCGCGACTTCCTGCACAAGGTCTCGA
CCGCGATTTGCAAAAGCCAGGCAATCGTGTGCATCGAGGACTTGCGGGTGCGGAATATGTCCAAGTTGGCGGCAGGGACAGCAGATGCTCCTGGGAAGAA
CGTCCGCGCCAAGTCAGCGTTAAACAAAGCCATTCTCGACCAGGGGTGGTATGAGTTCCGCTGCATGCTGGAGTACAAGCTGGCCTGGAAAGGTGGCAGG
CTCATTGTCGTGCCGCCGCAGAACCCGAGCCGCACCTGTCCATGTTGCGGCCATGTTTCATCAGACAACCGCCAGACCCAAGCCTGGTTCGAGTGCGTGG
CGTGCGGCTATGAGAATAACGCCGATCGCGGCAGCGGGCCGGAGGCCTTTCGCGGCAGCGGGCCGGAGGCCTTTCTGGTCGGTGCCATCAACATCCTTGC
TCGCGGGATACAGCTGTTGCGAGACGAAGGGCAGGACACGGCCGACGCTGCGGTCGGGATGCGGGTGGGTGAACCACCCGTGTCAGCCCGGATGGCCTGT
GGATCGAACTGCACGGGCGGTCGGAAGCAGGAACCCGCCGAGACGACTGCGCAAGGAGCCATCCATGCGTAGCGTGGTAGGAATCTCCAGCCTTCAGGCC
GGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 135 | 1472 | + | No |
AG : TnpB
ORF sequence :
MQRLQAFKYELLPNGQQERQMRRFAGSCRFVYNKALALQKERHEQGQKKLGYAGLCQLLTAWRHSADTAWLADAPVHPLQQALQDLERAYSHFFAQRAGF
PKFKKKGRSDSFRYPDPKQIQLDQANSRIFLPKLGWLRYRNSRDVVGKVKSVTVSKHAGKWFVSIQTEREVNWPIPQGGAVGMDMGIARLATLSDGTFYA
PLNSFKRHEARLRKAQQALSRKVKFSNNWKKAKARLQRIHSQMANARRDFLHKVSTAICKSQAIVCIEDLRVRNMSKLAAGTADAPGKNVRAKSALNKAI
LDQGWYEFRCMLEYKLAWKGGRLIVVPPQNPSRTCPCCGHVSSDNRQTQAWFECVACGYENNADRGSGPEAFRGSGPEAFLVGAINILARGIQLLRDEGQ
DTADAAVGMRVGEPPVSARMACGSNCTGGRKQEPAETTAQGAIHA
PKFKKKGRSDSFRYPDPKQIQLDQANSRIFLPKLGWLRYRNSRDVVGKVKSVTVSKHAGKWFVSIQTEREVNWPIPQGGAVGMDMGIARLATLSDGTFYA
PLNSFKRHEARLRKAQQALSRKVKFSNNWKKAKARLQRIHSQMANARRDFLHKVSTAICKSQAIVCIEDLRVRNMSKLAAGTADAPGKNVRAKSALNKAI
LDQGWYEFRCMLEYKLAWKGGRLIVVPPQNPSRTCPCCGHVSSDNRQTQAWFECVACGYENNADRGSGPEAFRGSGPEAFLVGAINILARGIQLLRDEGQ
DTADAAVGMRVGEPPVSARMACGSNCTGGRKQEPAETTAQGAIHA
Blast result :
Comments
ISSoc9 is 84% (TnpB) aa similar to ISAba30.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.