ISSoc9

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000240 ND Synechococcus sp.
Synechococcus sp. JA-2-3B'a(2-13)
DNA section
IS Length : 1514 bp

Ends


Left end : CAAAAGGCGCGGCAAGCCCCGTCCTTCAGGGCAGGGAAGGATAGCGCCGACCGTAGCCGACGCCCTTTAAAAACGCAGTGCCGGCCATGTGAATATCGTT II struct. : Yes
Right end : GGGCGGTCGGAAGCAGGAACCCGCCGAGACGACTGCGCAAGGAGCCATCCATGCGTAGCGTGGTAGGAATCTCCAGCCTTCAGGCCGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AAACACCGACTGACGATTCCCGTTTCAA
GCAGCTGTATTGACTTGCAGAGAGTCAA
GGGATCCCATTGACTGCTTGTTTCTCAA
GGCGATCCCCTGACAAGACCTCAGTCAA
TGTCTTGAGTTGACTTTCCCAGTTTCAA
TCCGCACCGCTGACCGCCTTCCGCTCAA
TTCAGAAACTTGACGGTATTCTGTTCAA

DNA sequence

CAAAAGGCGCGGCAAGCCCCGTCCTTCAGGGCAGGGAAGGATAGCGCCGACCGTAGCCGACGCCCTTTAAAAACGCAGTGCCGGCCATGTGAATATCGTT
GTCATCACGCATAGGTCAAGAATACGATTGAGCGGTGCAACGACTTCAAGCCTTCAAGTACGAATTGCTGCCCAACGGCCAGCAGGAACGGCAGATGCGC
CGCTTTGCTGGCTCCTGCCGGTTCGTCTACAACAAAGCACTGGCGTTGCAGAAGGAGCGTCACGAGCAAGGTCAGAAAAAGCTAGGCTATGCGGGCCTGT
GCCAGCTGCTCACCGCGTGGCGCCACAGCGCAGATACGGCGTGGCTGGCGGATGCGCCGGTGCATCCGCTGCAACAGGCGCTCCAGGATTTGGAGCGAGC
CTACAGCCACTTCTTCGCCCAGCGCGCCGGCTTCCCGAAGTTCAAGAAAAAAGGCCGGTCGGACAGTTTCCGTTATCCCGACCCCAAGCAAATCCAGCTG
GACCAGGCCAACAGCCGCATCTTTCTGCCCAAACTTGGCTGGCTGCGTTATCGCAACAGCCGCGACGTGGTGGGCAAGGTCAAGAGCGTCACCGTATCCA
AGCACGCTGGCAAGTGGTTCGTGTCGATTCAGACCGAGCGGGAGGTTAATTGGCCTATTCCGCAGGGGGGCGCAGTGGGCATGGACATGGGCATTGCCCG
CTTGGCTACCCTCTCGGACGGCACGTTCTACGCGCCCCTCAACAGCTTCAAGCGGCACGAGGCGCGCTTGCGCAAGGCCCAGCAAGCGCTCTCCCGCAAA
GTCAAGTTCAGCAACAACTGGAAGAAGGCAAAAGCCCGCCTCCAGCGTATTCATTCTCAGATGGCCAACGCCCGCCGCGACTTCCTGCACAAGGTCTCGA
CCGCGATTTGCAAAAGCCAGGCAATCGTGTGCATCGAGGACTTGCGGGTGCGGAATATGTCCAAGTTGGCGGCAGGGACAGCAGATGCTCCTGGGAAGAA
CGTCCGCGCCAAGTCAGCGTTAAACAAAGCCATTCTCGACCAGGGGTGGTATGAGTTCCGCTGCATGCTGGAGTACAAGCTGGCCTGGAAAGGTGGCAGG
CTCATTGTCGTGCCGCCGCAGAACCCGAGCCGCACCTGTCCATGTTGCGGCCATGTTTCATCAGACAACCGCCAGACCCAAGCCTGGTTCGAGTGCGTGG
CGTGCGGCTATGAGAATAACGCCGATCGCGGCAGCGGGCCGGAGGCCTTTCGCGGCAGCGGGCCGGAGGCCTTTCTGGTCGGTGCCATCAACATCCTTGC
TCGCGGGATACAGCTGTTGCGAGACGAAGGGCAGGACACGGCCGACGCTGCGGTCGGGATGCGGGTGGGTGAACCACCCGTGTCAGCCCGGATGGCCTGT
GGATCGAACTGCACGGGCGGTCGGAAGCAGGAACCCGCCGAGACGACTGCGCAAGGAGCCATCCATGCGTAGCGTGGTAGGAATCTCCAGCCTTCAGGCC
GGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa1351472+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MQRLQAFKYELLPNGQQERQMRRFAGSCRFVYNKALALQKERHEQGQKKLGYAGLCQLLTAWRHSADTAWLADAPVHPLQQALQDLERAYSHFFAQRAGF
PKFKKKGRSDSFRYPDPKQIQLDQANSRIFLPKLGWLRYRNSRDVVGKVKSVTVSKHAGKWFVSIQTEREVNWPIPQGGAVGMDMGIARLATLSDGTFYA
PLNSFKRHEARLRKAQQALSRKVKFSNNWKKAKARLQRIHSQMANARRDFLHKVSTAICKSQAIVCIEDLRVRNMSKLAAGTADAPGKNVRAKSALNKAI
LDQGWYEFRCMLEYKLAWKGGRLIVVPPQNPSRTCPCCGHVSSDNRQTQAWFECVACGYENNADRGSGPEAFRGSGPEAFLVGAINILARGIQLLRDEGQ
DTADAAVGMRVGEPPVSARMACGSNCTGGRKQEPAETTAQGAIHA

 

Blast result :
Comments
ISSoc9 is 84% (TnpB) aa similar to ISAba30.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.