ISSoc8
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007776 | ND | Synechococcus sp. | Synechococcus sp. JA-2-3B'a(2-13) |
DNA section
IS Length : 1285 bp
Ends
Left end : CAAATTTTCGGGCTGGAGGCCCGCACCATAGCCGCAGGCTTGGTGTCGGGAGGAAAGCCCTCCTCCATATAGGTTTGCTGGTCAAGTCTGGATGAACTAC II struct. : Yes
Right end : AAACTCGCCTGAAATTCCGAAACTTAGCTGTCCTCTGGGGCCGCTAGGGATTGGGATAAAGCCCGCACCCTGCGCGTAGCGCGGGTGTCGGGTAGTTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTCGGTATCT | TCAC | TTGGACTGAC | TTAC |
CCCTCTAGAA | TCAC | CAAACAGCTT | ttac |
GGCTAACCGT | TCAC | CCTTGCGTTC | ttac |
GTTTTGCTGC | TCAC | AAGTGCTTCA | TTAC |
TAGTCACTAG | TCAC | TAGCCTTTTT | TTAC |
CCCAGCGCAT | TCAC | TTGCCTTTTT | TTAC |
TCCTTGCATT | TCAC | AAAAGCTTGA | ttac |
DNA sequence
CAAATTTTCGGGCTGGAGGCCCGCACCATAGCCGCAGGCTTGGTGTCGGGAGGAAAGCCCTCCTCCATATAGGTTTGCTGGTCAAGTCTGGATGAACTAC
AATAGGCCCATGAGCCAGACTGTCTCTGTACGTTGCAAGCTGATAGTCCCACAAGAGTTGCGTCAAGAAATTGACCGCACTTTGCAGGGCTTTGCGAATG
CTTGCAACCAGATTCTCGACACCGCCAAACAAAAGAACTGCTGGAACACCGCCAAGCTGCACCACTTGGTCTATCGGCCGGTAAGGGCAGCAACGGGGCT
GAAAGCCAACCACGTCTGTCAGGCGCTCCGTCGGGTGATTAGCAATGCTAAGGCGGTGAAGCAAGTCCACAAGTTCCGCCCCACCAGTCTGACTTTGGAC
GCGCGTACTTTTAAGTACCGAGAGTCCGACCAAGCCGTGGGCGTGACCCTGATGAGCGGACGGGTTTGGCTCAAGCTCAAGATCGGTGGCTACCAGATAG
CGCTTCTGCGAGGCCAGAAGCCGACAAGCGCAACCCTGTCCAAGACCAAGCAAGGGGACTACTACATCAACATTGCTGTTGAATTGGATACTCCCCCGAC
TGGCAAAACTCCAAAGGTGATCGGAGTTGACTTGGGCAGGCGGGATATCGCCACCGCTAGCAACGGACGCTCTTGGAGTGGAGAGCACATCCAGGCCGTC
CGTGACCGGTTCAGCCGTGTACGCGCCAAGGTTCAATCCAAACGCACTCGCAGCTCTAGGAGACTGCTGAGAAGGCTCTCTGGGAGAGAACGGCGCTACC
AGACATGGCTGAACCACAACATCAGCAAAACCTTGGTCAGGGATGCCCAGGCTATTGGTGCGGCACTGGCTTTTGAAGACTTGACAGGCATCAGAGATTG
CCTGAATCAGAAGTCTCGAAGTAAGGCTGAGCGGCGCAGGACTAACAACTGGGCGTTCTACCAGCTCAGGATGTTTGTAGCCTACAAGGCTGCCATTGCT
GGAGTGCCTGTGGTGCTGGTGCCGCCTGCCTACACCAGTCAGACCTGCCACAAATGCCTGCACATCCACCCTGAGCGGGGTAAATCCTACCGCAATGGCA
AGTCGTTCAAGTGTGGACATTGTGGGTGGGAAGGGGATGCTGACCATAACGCTGCTCAAGTAATCTCTCTCCTTGGGGCGACTGTAAACTCGCCTGAAAT
TCCGAAACTTAGCTGTCCTCTGGGGCCGCTAGGGATTGGGATAAAGCCCGCACCCTGCGCGTAGCGCGGGTGTCGGGTAGTTTAC
AATAGGCCCATGAGCCAGACTGTCTCTGTACGTTGCAAGCTGATAGTCCCACAAGAGTTGCGTCAAGAAATTGACCGCACTTTGCAGGGCTTTGCGAATG
CTTGCAACCAGATTCTCGACACCGCCAAACAAAAGAACTGCTGGAACACCGCCAAGCTGCACCACTTGGTCTATCGGCCGGTAAGGGCAGCAACGGGGCT
GAAAGCCAACCACGTCTGTCAGGCGCTCCGTCGGGTGATTAGCAATGCTAAGGCGGTGAAGCAAGTCCACAAGTTCCGCCCCACCAGTCTGACTTTGGAC
GCGCGTACTTTTAAGTACCGAGAGTCCGACCAAGCCGTGGGCGTGACCCTGATGAGCGGACGGGTTTGGCTCAAGCTCAAGATCGGTGGCTACCAGATAG
CGCTTCTGCGAGGCCAGAAGCCGACAAGCGCAACCCTGTCCAAGACCAAGCAAGGGGACTACTACATCAACATTGCTGTTGAATTGGATACTCCCCCGAC
TGGCAAAACTCCAAAGGTGATCGGAGTTGACTTGGGCAGGCGGGATATCGCCACCGCTAGCAACGGACGCTCTTGGAGTGGAGAGCACATCCAGGCCGTC
CGTGACCGGTTCAGCCGTGTACGCGCCAAGGTTCAATCCAAACGCACTCGCAGCTCTAGGAGACTGCTGAGAAGGCTCTCTGGGAGAGAACGGCGCTACC
AGACATGGCTGAACCACAACATCAGCAAAACCTTGGTCAGGGATGCCCAGGCTATTGGTGCGGCACTGGCTTTTGAAGACTTGACAGGCATCAGAGATTG
CCTGAATCAGAAGTCTCGAAGTAAGGCTGAGCGGCGCAGGACTAACAACTGGGCGTTCTACCAGCTCAGGATGTTTGTAGCCTACAAGGCTGCCATTGCT
GGAGTGCCTGTGGTGCTGGTGCCGCCTGCCTACACCAGTCAGACCTGCCACAAATGCCTGCACATCCACCCTGAGCGGGGTAAATCCTACCGCAATGGCA
AGTCGTTCAAGTGTGGACATTGTGGGTGGGAAGGGGATGCTGACCATAACGCTGCTCAAGTAATCTCTCTCCTTGGGGCGACTGTAAACTCGCCTGAAAT
TCCGAAACTTAGCTGTCCTCTGGGGCCGCTAGGGATTGGGATAAAGCCCGCACCCTGCGCGTAGCGCGGGTGTCGGGTAGTTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1155 bp | 384 aa | 110 | 1264 | + | No |
AG : TnpB
ORF sequence :
MSQTVSVRCKLIVPQELRQEIDRTLQGFANACNQILDTAKQKNCWNTAKLHHLVYRPVRAATGLKANHVCQALRRVISNAKAVKQVHKFRPTSLTLDART
FKYRESDQAVGVTLMSGRVWLKLKIGGYQIALLRGQKPTSATLSKTKQGDYYINIAVELDTPPTGKTPKVIGVDLGRRDIATASNGRSWSGEHIQAVRDR
FSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISKTLVRDAQAIGAALAFEDLTGIRDCLNQKSRSKAERRRTNNWAFYQLRMFVAYKAAIAGVP
VVLVPPAYTSQTCHKCLHIHPERGKSYRNGKSFKCGHCGWEGDADHNAAQVISLLGATVNSPEIPKLSCPLGPLGIGIKPAPCA
FKYRESDQAVGVTLMSGRVWLKLKIGGYQIALLRGQKPTSATLSKTKQGDYYINIAVELDTPPTGKTPKVIGVDLGRRDIATASNGRSWSGEHIQAVRDR
FSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISKTLVRDAQAIGAALAFEDLTGIRDCLNQKSRSKAERRRTNNWAFYQLRMFVAYKAAIAGVP
VVLVPPAYTSQTCHKCLHIHPERGKSYRNGKSFKCGHCGWEGDADHNAAQVISLLGATVNSPEIPKLSCPLGPLGIGIKPAPCA
Blast result :
Comments
ISSoc8 is 52% (TnpB) aa similar to ISHhu4.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.