ISSoc8

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007776 ND Synechococcus sp.
Synechococcus sp. JA-2-3B'a(2-13)
DNA section
IS Length : 1285 bp

Ends


Left end : CAAATTTTCGGGCTGGAGGCCCGCACCATAGCCGCAGGCTTGGTGTCGGGAGGAAAGCCCTCCTCCATATAGGTTTGCTGGTCAAGTCTGGATGAACTAC II struct. : Yes
Right end : AAACTCGCCTGAAATTCCGAAACTTAGCTGTCCTCTGGGGCCGCTAGGGATTGGGATAAAGCCCGCACCCTGCGCGTAGCGCGGGTGTCGGGTAGTTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CTCGGTATCTTCACTTGGACTGACTTAC
CCCTCTAGAATCACCAAACAGCTTttac
GGCTAACCGTTCACCCTTGCGTTCttac
GTTTTGCTGCTCACAAGTGCTTCATTAC
TAGTCACTAGTCACTAGCCTTTTTTTAC
CCCAGCGCATTCACTTGCCTTTTTTTAC
TCCTTGCATTTCACAAAAGCTTGAttac

DNA sequence

CAAATTTTCGGGCTGGAGGCCCGCACCATAGCCGCAGGCTTGGTGTCGGGAGGAAAGCCCTCCTCCATATAGGTTTGCTGGTCAAGTCTGGATGAACTAC
AATAGGCCCATGAGCCAGACTGTCTCTGTACGTTGCAAGCTGATAGTCCCACAAGAGTTGCGTCAAGAAATTGACCGCACTTTGCAGGGCTTTGCGAATG
CTTGCAACCAGATTCTCGACACCGCCAAACAAAAGAACTGCTGGAACACCGCCAAGCTGCACCACTTGGTCTATCGGCCGGTAAGGGCAGCAACGGGGCT
GAAAGCCAACCACGTCTGTCAGGCGCTCCGTCGGGTGATTAGCAATGCTAAGGCGGTGAAGCAAGTCCACAAGTTCCGCCCCACCAGTCTGACTTTGGAC
GCGCGTACTTTTAAGTACCGAGAGTCCGACCAAGCCGTGGGCGTGACCCTGATGAGCGGACGGGTTTGGCTCAAGCTCAAGATCGGTGGCTACCAGATAG
CGCTTCTGCGAGGCCAGAAGCCGACAAGCGCAACCCTGTCCAAGACCAAGCAAGGGGACTACTACATCAACATTGCTGTTGAATTGGATACTCCCCCGAC
TGGCAAAACTCCAAAGGTGATCGGAGTTGACTTGGGCAGGCGGGATATCGCCACCGCTAGCAACGGACGCTCTTGGAGTGGAGAGCACATCCAGGCCGTC
CGTGACCGGTTCAGCCGTGTACGCGCCAAGGTTCAATCCAAACGCACTCGCAGCTCTAGGAGACTGCTGAGAAGGCTCTCTGGGAGAGAACGGCGCTACC
AGACATGGCTGAACCACAACATCAGCAAAACCTTGGTCAGGGATGCCCAGGCTATTGGTGCGGCACTGGCTTTTGAAGACTTGACAGGCATCAGAGATTG
CCTGAATCAGAAGTCTCGAAGTAAGGCTGAGCGGCGCAGGACTAACAACTGGGCGTTCTACCAGCTCAGGATGTTTGTAGCCTACAAGGCTGCCATTGCT
GGAGTGCCTGTGGTGCTGGTGCCGCCTGCCTACACCAGTCAGACCTGCCACAAATGCCTGCACATCCACCCTGAGCGGGGTAAATCCTACCGCAATGGCA
AGTCGTTCAAGTGTGGACATTGTGGGTGGGAAGGGGATGCTGACCATAACGCTGCTCAAGTAATCTCTCTCCTTGGGGCGACTGTAAACTCGCCTGAAAT
TCCGAAACTTAGCTGTCCTCTGGGGCCGCTAGGGATTGGGATAAAGCCCGCACCCTGCGCGTAGCGCGGGTGTCGGGTAGTTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1155 bp384 aa1101264+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSQTVSVRCKLIVPQELRQEIDRTLQGFANACNQILDTAKQKNCWNTAKLHHLVYRPVRAATGLKANHVCQALRRVISNAKAVKQVHKFRPTSLTLDART
FKYRESDQAVGVTLMSGRVWLKLKIGGYQIALLRGQKPTSATLSKTKQGDYYINIAVELDTPPTGKTPKVIGVDLGRRDIATASNGRSWSGEHIQAVRDR
FSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISKTLVRDAQAIGAALAFEDLTGIRDCLNQKSRSKAERRRTNNWAFYQLRMFVAYKAAIAGVP
VVLVPPAYTSQTCHKCLHIHPERGKSYRNGKSFKCGHCGWEGDADHNAAQVISLLGATVNSPEIPKLSCPLGPLGIGIKPAPCA

 

Blast result :
Comments
ISSoc8 is 52% (TnpB) aa similar to ISHhu4.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.