ISSoc5
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000239 | ND | Synechococcus sp. | Synechococcus sp. JA-3-3Ab |
DNA section
IS Length : 1413 bp
Ends
Left end : CTAATCCGCCGTTCGCGCTAGCGGGACGTAGTCCTGGAAGCCCCGCTCTGTACCCCCCAGTCCCCCAGCCCCCCAGTCCCCCCGTATACGGGGGGATATA II struct. : No
Right end : GGCGTCCCGTTCTTCAAGCTCAGGAAATGTCCTGCTATCGGGCAGGAGTCACTGGGAAGCCTGCACTCTATGCGTCAGCATGAGTGCGGGAGTACGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ATCGATGGCT | TTAG | GTATTCATAC | tcac |
CATGCGGGCT | TTAG | GGTTTCACGG | tcac |
DNA sequence
CTAATCCGCCGTTCGCGCTAGCGGGACGTAGTCCTGGAAGCCCCGCTCTGTACCCCCCAGTCCCCCAGCCCCCCAGTCCCCCCGTATACGGGGGGATATA
GGGGGGGCGGGCCGGTCAGAGTCAGGATGAGAGGCGGGAGCGTTCAACAGGTACAATGCATTCATCATGAGAACCGCTTACCAGTACCGCTTGCGCCCTA
CTGCTAGCCAAGTCGCCCTGATGGGTGAGTGGCTGGAGCTGCTGCGTAGGCAGTACAACTATCGCCTGGCAGAACGGTTCAACGGGTGGGAGCAGAATCG
CTGCAATATCCATGCCTGCTCCTTGACGGTCTGTCATCTGCCTGAGTTGAAAGACAAGCCCGATTTCTACTCACAGAAACGAGACTTGGTAAACACAAAG
GCTCTCTTCCCCGAATACCAAGCGATTCATTCCCAGGTGCTCCAAGACTGCCTACAGCGGGTGCAAAGAGCGTTTGACCGATGGCTAAAAGGTGACTGTA
ACGGCAAGCGGGCAGGCAGGCCTAGGTTTAAGGGAGTAGGGCGGTATCGCTCCTTCACCTTCCCCCAGATGAAGCAGGACTGCATTCGAGGGCAGTTTAT
CCATCTGCCCAAGATTGGGCCGGTCAAGCTGGTCCAACACCGCCCTTTGCCGGACGGCTTCGTGATTAAAACTGCTACCGTTGCCCGCAAGGCTGATGGA
TGGTATGTGACCTTGAGCTTACAAGATTCGTCTGTCCCGGAATGGAGCCCTGACCCGCCAACGTGGGAAAACACGATGGGGATAGACCTGGGGCTAAGCT
CTTTCTTGGTCACCGATGAGGGTGAGGTTATCGAGGTTCCTCAGTATTACCGTAAAGCGCAAAAGCCCCTCAAGCGGCTGCAACGGTCTGTATCGCGCAA
GCAGAAGGGGTCAAACCGCTACCAGAAAGCGGTCAAGAGGTTGAGCAAGGCACATCAGAAAGTAGCCAACCAGCGCCGGGATTTCCACCACAAAGTTGCT
CATCAGCTTTTGCAAAAAGGGAGACACATAGCCCATGAGGCATTGAACATCAAAGGTCTGGCAAGGACAAGGTTGGCCAAATCTATCCATGACGCCGGTT
GGGGTGAGTTCCTGCAAATTCTGGCAGCCAAGGCTGAAAGAGCTGGGCTGTTGACGATTGCAGGGGATCCCCGCGGCAGCAGTCAAGGGTGCTCGGGGTG
CGGTCGTGAGGTGCCCAAAGAGCTGCATGAGCGGTGGCACGATTGTCCGCACTGTGGGTTGAGGATTGGTAGGGATCACAACTCGGCGAGGGTCATCAAA
TCCAGAGCGGTGGGGCGTCCCGTTCTTCAAGCTCAGGAAATGTCCTGCTATCGGGCAGGAGTCACTGGGAAGCCTGCACTCTATGCGTCAGCATGAGTGC
GGGAGTACGTCAC
GGGGGGGCGGGCCGGTCAGAGTCAGGATGAGAGGCGGGAGCGTTCAACAGGTACAATGCATTCATCATGAGAACCGCTTACCAGTACCGCTTGCGCCCTA
CTGCTAGCCAAGTCGCCCTGATGGGTGAGTGGCTGGAGCTGCTGCGTAGGCAGTACAACTATCGCCTGGCAGAACGGTTCAACGGGTGGGAGCAGAATCG
CTGCAATATCCATGCCTGCTCCTTGACGGTCTGTCATCTGCCTGAGTTGAAAGACAAGCCCGATTTCTACTCACAGAAACGAGACTTGGTAAACACAAAG
GCTCTCTTCCCCGAATACCAAGCGATTCATTCCCAGGTGCTCCAAGACTGCCTACAGCGGGTGCAAAGAGCGTTTGACCGATGGCTAAAAGGTGACTGTA
ACGGCAAGCGGGCAGGCAGGCCTAGGTTTAAGGGAGTAGGGCGGTATCGCTCCTTCACCTTCCCCCAGATGAAGCAGGACTGCATTCGAGGGCAGTTTAT
CCATCTGCCCAAGATTGGGCCGGTCAAGCTGGTCCAACACCGCCCTTTGCCGGACGGCTTCGTGATTAAAACTGCTACCGTTGCCCGCAAGGCTGATGGA
TGGTATGTGACCTTGAGCTTACAAGATTCGTCTGTCCCGGAATGGAGCCCTGACCCGCCAACGTGGGAAAACACGATGGGGATAGACCTGGGGCTAAGCT
CTTTCTTGGTCACCGATGAGGGTGAGGTTATCGAGGTTCCTCAGTATTACCGTAAAGCGCAAAAGCCCCTCAAGCGGCTGCAACGGTCTGTATCGCGCAA
GCAGAAGGGGTCAAACCGCTACCAGAAAGCGGTCAAGAGGTTGAGCAAGGCACATCAGAAAGTAGCCAACCAGCGCCGGGATTTCCACCACAAAGTTGCT
CATCAGCTTTTGCAAAAAGGGAGACACATAGCCCATGAGGCATTGAACATCAAAGGTCTGGCAAGGACAAGGTTGGCCAAATCTATCCATGACGCCGGTT
GGGGTGAGTTCCTGCAAATTCTGGCAGCCAAGGCTGAAAGAGCTGGGCTGTTGACGATTGCAGGGGATCCCCGCGGCAGCAGTCAAGGGTGCTCGGGGTG
CGGTCGTGAGGTGCCCAAAGAGCTGCATGAGCGGTGGCACGATTGTCCGCACTGTGGGTTGAGGATTGGTAGGGATCACAACTCGGCGAGGGTCATCAAA
TCCAGAGCGGTGGGGCGTCCCGTTCTTCAAGCTCAGGAAATGTCCTGCTATCGGGCAGGAGTCACTGGGAAGCCTGCACTCTATGCGTCAGCATGAGTGC
GGGAGTACGTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 167 | 1396 | + | No |
AG : TnpB
ORF sequence :
MRTAYQYRLRPTASQVALMGEWLELLRRQYNYRLAERFNGWEQNRCNIHACSLTVCHLPELKDKPDFYSQKRDLVNTKALFPEYQAIHSQVLQDCLQRVQ
RAFDRWLKGDCNGKRAGRPRFKGVGRYRSFTFPQMKQDCIRGQFIHLPKIGPVKLVQHRPLPDGFVIKTATVARKADGWYVTLSLQDSSVPEWSPDPPTW
ENTMGIDLGLSSFLVTDEGEVIEVPQYYRKAQKPLKRLQRSVSRKQKGSNRYQKAVKRLSKAHQKVANQRRDFHHKVAHQLLQKGRHIAHEALNIKGLAR
TRLAKSIHDAGWGEFLQILAAKAERAGLLTIAGDPRGSSQGCSGCGREVPKELHERWHDCPHCGLRIGRDHNSARVIKSRAVGRPVLQAQEMSCYRAGVT
GKPALYASA
RAFDRWLKGDCNGKRAGRPRFKGVGRYRSFTFPQMKQDCIRGQFIHLPKIGPVKLVQHRPLPDGFVIKTATVARKADGWYVTLSLQDSSVPEWSPDPPTW
ENTMGIDLGLSSFLVTDEGEVIEVPQYYRKAQKPLKRLQRSVSRKQKGSNRYQKAVKRLSKAHQKVANQRRDFHHKVAHQLLQKGRHIAHEALNIKGLAR
TRLAKSIHDAGWGEFLQILAAKAERAGLLTIAGDPRGSSQGCSGCGREVPKELHERWHDCPHCGLRIGRDHNSARVIKSRAVGRPVLQAQEMSCYRAGVT
GKPALYASA
Blast result :
Comments
ISSoc5 is 70% (TnpB) aa similar to ISAsp13.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.