ISSoc5

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000239 ND Synechococcus sp.
Synechococcus sp. JA-3-3Ab
DNA section
IS Length : 1413 bp

Ends


Left end : CTAATCCGCCGTTCGCGCTAGCGGGACGTAGTCCTGGAAGCCCCGCTCTGTACCCCCCAGTCCCCCAGCCCCCCAGTCCCCCCGTATACGGGGGGATATA II struct. : No
Right end : GGCGTCCCGTTCTTCAAGCTCAGGAAATGTCCTGCTATCGGGCAGGAGTCACTGGGAAGCCTGCACTCTATGCGTCAGCATGAGTGCGGGAGTACGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ATCGATGGCTTTAGGTATTCATACtcac
CATGCGGGCTTTAGGGTTTCACGGtcac

DNA sequence

CTAATCCGCCGTTCGCGCTAGCGGGACGTAGTCCTGGAAGCCCCGCTCTGTACCCCCCAGTCCCCCAGCCCCCCAGTCCCCCCGTATACGGGGGGATATA
GGGGGGGCGGGCCGGTCAGAGTCAGGATGAGAGGCGGGAGCGTTCAACAGGTACAATGCATTCATCATGAGAACCGCTTACCAGTACCGCTTGCGCCCTA
CTGCTAGCCAAGTCGCCCTGATGGGTGAGTGGCTGGAGCTGCTGCGTAGGCAGTACAACTATCGCCTGGCAGAACGGTTCAACGGGTGGGAGCAGAATCG
CTGCAATATCCATGCCTGCTCCTTGACGGTCTGTCATCTGCCTGAGTTGAAAGACAAGCCCGATTTCTACTCACAGAAACGAGACTTGGTAAACACAAAG
GCTCTCTTCCCCGAATACCAAGCGATTCATTCCCAGGTGCTCCAAGACTGCCTACAGCGGGTGCAAAGAGCGTTTGACCGATGGCTAAAAGGTGACTGTA
ACGGCAAGCGGGCAGGCAGGCCTAGGTTTAAGGGAGTAGGGCGGTATCGCTCCTTCACCTTCCCCCAGATGAAGCAGGACTGCATTCGAGGGCAGTTTAT
CCATCTGCCCAAGATTGGGCCGGTCAAGCTGGTCCAACACCGCCCTTTGCCGGACGGCTTCGTGATTAAAACTGCTACCGTTGCCCGCAAGGCTGATGGA
TGGTATGTGACCTTGAGCTTACAAGATTCGTCTGTCCCGGAATGGAGCCCTGACCCGCCAACGTGGGAAAACACGATGGGGATAGACCTGGGGCTAAGCT
CTTTCTTGGTCACCGATGAGGGTGAGGTTATCGAGGTTCCTCAGTATTACCGTAAAGCGCAAAAGCCCCTCAAGCGGCTGCAACGGTCTGTATCGCGCAA
GCAGAAGGGGTCAAACCGCTACCAGAAAGCGGTCAAGAGGTTGAGCAAGGCACATCAGAAAGTAGCCAACCAGCGCCGGGATTTCCACCACAAAGTTGCT
CATCAGCTTTTGCAAAAAGGGAGACACATAGCCCATGAGGCATTGAACATCAAAGGTCTGGCAAGGACAAGGTTGGCCAAATCTATCCATGACGCCGGTT
GGGGTGAGTTCCTGCAAATTCTGGCAGCCAAGGCTGAAAGAGCTGGGCTGTTGACGATTGCAGGGGATCCCCGCGGCAGCAGTCAAGGGTGCTCGGGGTG
CGGTCGTGAGGTGCCCAAAGAGCTGCATGAGCGGTGGCACGATTGTCCGCACTGTGGGTTGAGGATTGGTAGGGATCACAACTCGGCGAGGGTCATCAAA
TCCAGAGCGGTGGGGCGTCCCGTTCTTCAAGCTCAGGAAATGTCCTGCTATCGGGCAGGAGTCACTGGGAAGCCTGCACTCTATGCGTCAGCATGAGTGC
GGGAGTACGTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1230 bp409 aa1671396+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MRTAYQYRLRPTASQVALMGEWLELLRRQYNYRLAERFNGWEQNRCNIHACSLTVCHLPELKDKPDFYSQKRDLVNTKALFPEYQAIHSQVLQDCLQRVQ
RAFDRWLKGDCNGKRAGRPRFKGVGRYRSFTFPQMKQDCIRGQFIHLPKIGPVKLVQHRPLPDGFVIKTATVARKADGWYVTLSLQDSSVPEWSPDPPTW
ENTMGIDLGLSSFLVTDEGEVIEVPQYYRKAQKPLKRLQRSVSRKQKGSNRYQKAVKRLSKAHQKVANQRRDFHHKVAHQLLQKGRHIAHEALNIKGLAR
TRLAKSIHDAGWGEFLQILAAKAERAGLLTIAGDPRGSSQGCSGCGREVPKELHERWHDCPHCGLRIGRDHNSARVIKSRAVGRPVLQAQEMSCYRAGVT
GKPALYASA

 

Blast result :
Comments
ISSoc5 is 70% (TnpB) aa similar to ISAsp13.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.