ISSoc1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000239 ND Synechococcus sp.
Synechococcus sp. JA-3-3Ab
Synechococcus sp. JA-2-3B'a(2-13)
DNA section
IS Length : 1273 bp

Ends


Left end : CTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAATGCGGAAGTTATGATAGAACCATGACCCAAGTCCTGACTGTAGCTTG II struct. : Yes
Right end : GAGGTTCGGGCCTGTTTTGTTCTCTGGTGGAGCAGAGCAGGCTCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTTAGCGGTCGGAGTCGGGTAGTTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TCCGCTTCAGGACTTGAGCATTAC
TGTTCGTCAGAGCAGAAAGTTTAC
AGTAGATCAGTGCTCTCTATTTAC
GCGTCTTCAGCCATATAAGTTTAC
AGCCCGTCAGTAGAGGCGCTTTAC
GATAACTCAGATGGTTCCCGTTAC
GAAAGTTCAGAAAGTGCCAATTAC
CCTTATTCAGTTGCCCATCTTTAC
CTGTTTTCAGTTCAAGCTGGTTAC
CCGCCGTCAGTCGGCTCTTTTTAC
AGTTTGTCAGGCCCAAGTGTTTAC
GCAGAGTCAGGTCGGGGCGATTAC
TCTGCTTCAGTCTTTGCTACTTAC
GAATTTTCAGAACCATTCTGTTAC
CTTCTGTCAGGTAGATCATCTTAC
CTAGCTTCAGGCACAAATGCTTAC
ACTTCTTCAGGTTTTCACTTTTAC
GCGCTTTCAGATTCCCCTCTTTAC
ATACTCTCAGCACTCACCTCTTAC
CATCTGTCAGTGGATCCAGATTAC
AAAATTTCAGAGCCTCTATATTAC
GTCCCTTCAGAAGTGACTTTTTAC
GGTGTGTCAGGCTTTGCCGCTTAC
GAGGGATCAGCCAAATTCCTTTAC
GCATCTTCAGACGCCCGTCCTTAC
GCGATATCAGGGGTATAGCATTAC
CGGGGATCAGCTTTCGACCTTTAC
ATAGATTCAGAGTAACTGCATTAC
ACCCTCTCAGTCAGGTTAATTTAC
CGGTATTCAGTATCTCTCCATTAC
GTACTCTCAGTTGCCCCGATTTAC
TTGAGTTCAGTTTAAGTTTGTTAC
CCAGGTTCAGCTTTCAACCATTAC
CTCGGTTCAGCTCCCACCATTTAC
AGCCAGTCAGCTCTACACCCTTAC
GGGAGTTCAGGGCTTCGTCGTTAC
ATAAAGTCAGTTGATGCAATTTAC
ACTGCCTCAGTTTGTTGTTGTTAC

DNA sequence

CTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAATGCGGAAGTTATGATAGAACCATGACCCAAGTCCTGACTGTAGCTTG
CAAACTCAAGGTGTCCCAGTCGCAAGCCGCCAAATTGGACGCGACAATGGATGCCTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAAAAA
GTAGTCAACGCAGTCAAACTCCAATCCCTTTGCTATTACCAGATTCGCGCTCGGTTTGGCTTGTCCAGTAATCTGGCCCAGCAGGTCTGCAGACGGGTGG
CAGGCGCTCGCAAAGTGGCGAGACAGCGCAACCGTCCGGTTAAAGAGTTCAAGCGTAGGTTCGTTACCTACGATGCACGTATCTTCTCGTTTCGCGAGAA
AGACTGGACAGTGTCGCTTGCCACGGTTGATGGAAGAGAACGCTTTGAGCTAGCCATTGGCAACTACCAGAGGGGAATGCTGGCTGGCTCTAACCCCAAA
TCGGCCACCCTAGTCCAGCGGAAGGACGGCTCCTACTCCATCCAGATTTGTGTCGAGGCAGAGCCCCCCAAGCAACAGAACACCGACAAGGTGATTGGTG
TTGACCTGGGACGGCGAGACATTGCACATACCTCCGAAGGAGACAACTGGAATGGACAGCAGCTGAACAAAGTCCGAGATCACTACTGTCGGTTAAGAGC
GTCTCTTCAGCGCAAGGCCAGTAAGGGCACCCGCAGTTGCAGGCGGCGATGCCGTCAACTGCTGCAACGGCTGTCTGGCAAAGAGAGACGCTTTCAAGCT
TGGGTGAACCACAGTATCGCCAAGCGCATCGTTAAAACAGCAAAATCTCTTTCTGCCTGCATTGGGATTGAGGACTTGAGCGGCATCCGGGGGCGTACCA
ACCGGCAGCCCCGCAGTCGTGAGGAGCGGCGGCGTAGCAATAGCTGGGCGTTCTACCAGCTGCGGCGGTTTATCGAATACAAGGCTGTGAGGGCGGGTGT
CAAAGTGGTAGTTGTCCCTGCGGCCTATACCTCGCAGATCTGCCACAAGTGCCCGCATATTCATCCCGACTCCGCTCAATCCTATCGCAAGGGTAAGCAG
TTCAAATGCGGGCACTGCGGTTGGGAAGGGGATGCGGATTTTAACGGTGCGAAGGTGATTGCGCTTTTGGGGGCTGCCGTAAACCAGCCTAGAGGTTCGG
GCCTGTTTTGTTCTCTGGTGGAGCAGAGCAGGCTCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTTAGCGGTCGGAGTCGGGTAGTTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1212 bp403 aa751286+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTQVLTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYD
ARIFSFREKDWTVSLATVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICVEAEPPKQQNTDKVIGVDLGRRDIAHTSEGDNWNGQQLNKV
RDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGKERRFQAWVNHSIAKRIVKTAKSLSACIGIEDLSGIRGRTNRQPRSREERRRSNSWAFYQLRRFI
EYKAVRAGVKVVVVPAAYTSQICHKCPHIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAKVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTALAV
GVG

 

Blast result :
Comments
ISSoc1 is 51% (TnpB) aa similar to ISHhu5.
References
1] Bhaya, D., Grossman, A.R., Steunou, A.-S., Khuri, N., Cohan, F.M., Hamamura, N., Melendrez, M.C., Bateson, M.M., Ward, D.M., Heidelber, J.F. (2007) ISME J 1, 703-713.