ISHmu8
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001688 | ND | Halomicrobium mukohataei | Halomicrobium mukohataei DSM 12286 |
DNA section
IS Length : 1508 bp
Ends
Left end : CTAATTCAAGGTGGAGGCCCCACCCTCAAGGAGTGCCGGGCTTCCGATACGTCGGAAGCACAAACGAGTAGGGTGGGGAGGACAGCGCGGAACTCCGTTC II struct. : No
Right end : GCCTCATCCGAGGCGTAGAACGGGAGTCCACGCGAAAGCCCTCCCCTCAACGAGCGAGCGGGGTAATTACCCCCGAGCGAAGTAGGGGAGGGTAGTTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCCCGGAGCAGT | TCAC | TGGATGTAGGAC | ttac |
DNA sequence
CTAATTCAAGGTGGAGGCCCCACCCTCAAGGAGTGCCGGGCTTCCGATACGTCGGAAGCACAAACGAGTAGGGTGGGGAGGACAGCGCGGAACTCCGTTC
CGCGGGCCGTGCGAACGGCGAAGCCGTGAGCAGAAGCCGACATGGTACTGACTAGCCACCAAACTGTTGCCTGCTAACTCCCAACTATTAATTAACTACA
GGTATATATGTGAAAATACAGTGGAGTACCGTCGTACTGCCGTTATCAAGCTCGACACGCCCGAAGGCGCGGATGCACACCTTCAGGAGACTGTCGAGCA
ATTCAAATACTGCGCCAACACCGCGAGTAGGTGGTGCTGGCACGGCGACGACGGCTACCACGTTACCTCGAAAGCAAAAGCCGAACGCGGCCTGTACGAC
CAGCTACGCGAGGACACCGAGTTGACCGCGAACCTCGTCCAGAAGGGGATTCGCCAAGCCGTCGAAGCCGTCAAAAGCGGCGTCGAACGGCTCACAAACG
ACCAAGATACGTCTCGCCCGACGTTCACTGCGGATACCGCAATCTACGACAAGCGAAGTGCCACGTTCCATCGTGACCACGTTTCGCTGTCAACAGTGGA
CGGACGAATCGGGTGTGACTATATCCTCCCTGACGACGCTGACGTACCACCGACGAAGTACGTCACAGACGAGGAGTACGAGTTTCGGCGGGCGACTCTC
CATCGACGTGATGGCGACTGGTATCTCCATGCATCGATGCTCAAAGAGGACGACACCGACACCACGACCGGGCACAGAACAGTCCTCGGTGTGGACCTCG
GTGTGAACCAGCTCGCGGTCGCTTCGACTGGTCGGTTCTGGTCGGCAGACGAGTTCAACCACTGGAAGCGAGAGTACGAGAAACGGCGTGGCGACCTCCA
GCAGTGCGGGACACGGGCTGCACACGACGCGATAGAAGGAGTTGAACAGAAAGAGGACGGGCGCTTCGAGATATTCCTGCACCGTGTCGCCAACGAAATC
GTCGCTGAAGCCGTCGAACACGACTGTTCGCATATCGTGTTCGAGGATCTGACCGATATTCGTGAGAACGTGCCAGACGCGTCGTGGCATCATCTGTGGG
CGTTCCGTCGCCTCTATGAGTACGTCGAATACAAAGCTAGAGAGCAAGGCGTCGAATCCGTCCAAGTGGACCCACGCAACACTTCGAAGCGATGTTCGAC
CTGTGGGTTCACCCACGACGACAATCGCCATCAAGAGTCGTTCGAGTGTCTGAAGTGTGGGTACAAGAACCACGCGGACTACAACGCTTCCAAGAACATC
GGTTTGCAGTATCTCCGGCGTCGGCAAAACGCAGATGCCGGAGGCGTACCCGTAGACGTGCGCTTGAATCGCGGGACGCTGAACGTGAGTGGAGAGTACG
ACCTTCCCGCCTCATCCGAGGCGTAGAACGGGAGTCCACGCGAAAGCCCTCCCCTCAACGAGCGAGCGGGGTAATTACCCCCGAGCGAAGTAGGGGAGGG
TAGTTTAC
CGCGGGCCGTGCGAACGGCGAAGCCGTGAGCAGAAGCCGACATGGTACTGACTAGCCACCAAACTGTTGCCTGCTAACTCCCAACTATTAATTAACTACA
GGTATATATGTGAAAATACAGTGGAGTACCGTCGTACTGCCGTTATCAAGCTCGACACGCCCGAAGGCGCGGATGCACACCTTCAGGAGACTGTCGAGCA
ATTCAAATACTGCGCCAACACCGCGAGTAGGTGGTGCTGGCACGGCGACGACGGCTACCACGTTACCTCGAAAGCAAAAGCCGAACGCGGCCTGTACGAC
CAGCTACGCGAGGACACCGAGTTGACCGCGAACCTCGTCCAGAAGGGGATTCGCCAAGCCGTCGAAGCCGTCAAAAGCGGCGTCGAACGGCTCACAAACG
ACCAAGATACGTCTCGCCCGACGTTCACTGCGGATACCGCAATCTACGACAAGCGAAGTGCCACGTTCCATCGTGACCACGTTTCGCTGTCAACAGTGGA
CGGACGAATCGGGTGTGACTATATCCTCCCTGACGACGCTGACGTACCACCGACGAAGTACGTCACAGACGAGGAGTACGAGTTTCGGCGGGCGACTCTC
CATCGACGTGATGGCGACTGGTATCTCCATGCATCGATGCTCAAAGAGGACGACACCGACACCACGACCGGGCACAGAACAGTCCTCGGTGTGGACCTCG
GTGTGAACCAGCTCGCGGTCGCTTCGACTGGTCGGTTCTGGTCGGCAGACGAGTTCAACCACTGGAAGCGAGAGTACGAGAAACGGCGTGGCGACCTCCA
GCAGTGCGGGACACGGGCTGCACACGACGCGATAGAAGGAGTTGAACAGAAAGAGGACGGGCGCTTCGAGATATTCCTGCACCGTGTCGCCAACGAAATC
GTCGCTGAAGCCGTCGAACACGACTGTTCGCATATCGTGTTCGAGGATCTGACCGATATTCGTGAGAACGTGCCAGACGCGTCGTGGCATCATCTGTGGG
CGTTCCGTCGCCTCTATGAGTACGTCGAATACAAAGCTAGAGAGCAAGGCGTCGAATCCGTCCAAGTGGACCCACGCAACACTTCGAAGCGATGTTCGAC
CTGTGGGTTCACCCACGACGACAATCGCCATCAAGAGTCGTTCGAGTGTCTGAAGTGTGGGTACAAGAACCACGCGGACTACAACGCTTCCAAGAACATC
GGTTTGCAGTATCTCCGGCGTCGGCAAAACGCAGATGCCGGAGGCGTACCCGTAGACGTGCGCTTGAATCGCGGGACGCTGAACGTGAGTGGAGAGTACG
ACCTTCCCGCCTCATCCGAGGCGTAGAACGGGAGTCCACGCGAAAGCCCTCCCCTCAACGAGCGAGCGGGGTAATTACCCCCGAGCGAAGTAGGGGAGGG
TAGTTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1206 bp | 401 aa | 221 | 1426 | + | No |
AG : TnpB
ORF sequence :
MEYRRTAVIKLDTPEGADAHLQETVEQFKYCANTASRWCWHGDDGYHVTSKAKAERGLYDQLREDTELTANLVQKGIRQAVEAVKSGVERLTNDQDTSRP
TFTADTAIYDKRSATFHRDHVSLSTVDGRIGCDYILPDDADVPPTKYVTDEEYEFRRATLHRRDGDWYLHASMLKEDDTDTTTGHRTVLGVDLGVNQLAV
ASTGRFWSADEFNHWKREYEKRRGDLQQCGTRAAHDAIEGVEQKEDGRFEIFLHRVANEIVAEAVEHDCSHIVFEDLTDIRENVPDASWHHLWAFRRLYE
YVEYKAREQGVESVQVDPRNTSKRCSTCGFTHDDNRHQESFECLKCGYKNHADYNASKNIGLQYLRRRQNADAGGVPVDVRLNRGTLNVSGEYDLPASSE
A
TFTADTAIYDKRSATFHRDHVSLSTVDGRIGCDYILPDDADVPPTKYVTDEEYEFRRATLHRRDGDWYLHASMLKEDDTDTTTGHRTVLGVDLGVNQLAV
ASTGRFWSADEFNHWKREYEKRRGDLQQCGTRAAHDAIEGVEQKEDGRFEIFLHRVANEIVAEAVEHDCSHIVFEDLTDIRENVPDASWHHLWAFRRLYE
YVEYKAREQGVESVQVDPRNTSKRCSTCGFTHDDNRHQESFECLKCGYKNHADYNASKNIGLQYLRRRQNADAGGVPVDVRLNRGTLNVSGEYDLPASSE
A
Blast result :
Comments
ISHmu8 is 94% (TnpB) aa similar to ISNph21.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277