ISHmu8

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001688 ND Halomicrobium mukohataei
Halomicrobium mukohataei DSM 12286
DNA section
IS Length : 1508 bp

Ends


Left end : CTAATTCAAGGTGGAGGCCCCACCCTCAAGGAGTGCCGGGCTTCCGATACGTCGGAAGCACAAACGAGTAGGGTGGGGAGGACAGCGCGGAACTCCGTTC II struct. : No
Right end : GCCTCATCCGAGGCGTAGAACGGGAGTCCACGCGAAAGCCCTCCCCTCAACGAGCGAGCGGGGTAATTACCCCCGAGCGAAGTAGGGGAGGGTAGTTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CCCCGGAGCAGTTCACTGGATGTAGGACttac

DNA sequence

CTAATTCAAGGTGGAGGCCCCACCCTCAAGGAGTGCCGGGCTTCCGATACGTCGGAAGCACAAACGAGTAGGGTGGGGAGGACAGCGCGGAACTCCGTTC
CGCGGGCCGTGCGAACGGCGAAGCCGTGAGCAGAAGCCGACATGGTACTGACTAGCCACCAAACTGTTGCCTGCTAACTCCCAACTATTAATTAACTACA
GGTATATATGTGAAAATACAGTGGAGTACCGTCGTACTGCCGTTATCAAGCTCGACACGCCCGAAGGCGCGGATGCACACCTTCAGGAGACTGTCGAGCA
ATTCAAATACTGCGCCAACACCGCGAGTAGGTGGTGCTGGCACGGCGACGACGGCTACCACGTTACCTCGAAAGCAAAAGCCGAACGCGGCCTGTACGAC
CAGCTACGCGAGGACACCGAGTTGACCGCGAACCTCGTCCAGAAGGGGATTCGCCAAGCCGTCGAAGCCGTCAAAAGCGGCGTCGAACGGCTCACAAACG
ACCAAGATACGTCTCGCCCGACGTTCACTGCGGATACCGCAATCTACGACAAGCGAAGTGCCACGTTCCATCGTGACCACGTTTCGCTGTCAACAGTGGA
CGGACGAATCGGGTGTGACTATATCCTCCCTGACGACGCTGACGTACCACCGACGAAGTACGTCACAGACGAGGAGTACGAGTTTCGGCGGGCGACTCTC
CATCGACGTGATGGCGACTGGTATCTCCATGCATCGATGCTCAAAGAGGACGACACCGACACCACGACCGGGCACAGAACAGTCCTCGGTGTGGACCTCG
GTGTGAACCAGCTCGCGGTCGCTTCGACTGGTCGGTTCTGGTCGGCAGACGAGTTCAACCACTGGAAGCGAGAGTACGAGAAACGGCGTGGCGACCTCCA
GCAGTGCGGGACACGGGCTGCACACGACGCGATAGAAGGAGTTGAACAGAAAGAGGACGGGCGCTTCGAGATATTCCTGCACCGTGTCGCCAACGAAATC
GTCGCTGAAGCCGTCGAACACGACTGTTCGCATATCGTGTTCGAGGATCTGACCGATATTCGTGAGAACGTGCCAGACGCGTCGTGGCATCATCTGTGGG
CGTTCCGTCGCCTCTATGAGTACGTCGAATACAAAGCTAGAGAGCAAGGCGTCGAATCCGTCCAAGTGGACCCACGCAACACTTCGAAGCGATGTTCGAC
CTGTGGGTTCACCCACGACGACAATCGCCATCAAGAGTCGTTCGAGTGTCTGAAGTGTGGGTACAAGAACCACGCGGACTACAACGCTTCCAAGAACATC
GGTTTGCAGTATCTCCGGCGTCGGCAAAACGCAGATGCCGGAGGCGTACCCGTAGACGTGCGCTTGAATCGCGGGACGCTGAACGTGAGTGGAGAGTACG
ACCTTCCCGCCTCATCCGAGGCGTAGAACGGGAGTCCACGCGAAAGCCCTCCCCTCAACGAGCGAGCGGGGTAATTACCCCCGAGCGAAGTAGGGGAGGG
TAGTTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1206 bp401 aa2211426+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEYRRTAVIKLDTPEGADAHLQETVEQFKYCANTASRWCWHGDDGYHVTSKAKAERGLYDQLREDTELTANLVQKGIRQAVEAVKSGVERLTNDQDTSRP
TFTADTAIYDKRSATFHRDHVSLSTVDGRIGCDYILPDDADVPPTKYVTDEEYEFRRATLHRRDGDWYLHASMLKEDDTDTTTGHRTVLGVDLGVNQLAV
ASTGRFWSADEFNHWKREYEKRRGDLQQCGTRAAHDAIEGVEQKEDGRFEIFLHRVANEIVAEAVEHDCSHIVFEDLTDIRENVPDASWHHLWAFRRLYE
YVEYKAREQGVESVQVDPRNTSKRCSTCGFTHDDNRHQESFECLKCGYKNHADYNASKNIGLQYLRRRQNADAGGVPVDVRLNRGTLNVSGEYDLPASSE
A

 

Blast result :
Comments
ISHmu8 is 94% (TnpB) aa similar to ISNph21.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277