ISHals1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Haloferax sp. | Haloferax sp. ATB1 |
DNA section
IS Length : 1520 bp
Ends
Left end : ACAGAATCAAGGAGAATACCTGACCCTTTCAGGATGAATCCGACGATTCTCTACACCACCCACCGTTCGACGGCACGTCTGGATATTCCACCATCTCAAT II struct. : Yes
Right end : TTGTCCCACGGATTCTCACCGAGGGAACAAGTGGTTGACTGCAAACCCTAATATCCCAACGCTCGGGATTCCCGCGTCTTCAGGCGCGAGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTTCGCATATAT | GTAT | CAATATTATATT | tcaa |
DNA sequence
ACAGAATCAAGGAGAATACCTGACCCTTTCAGGATGAATCCGACGATTCTCTACACCACCCACCGTTCGACGGCACGTCTGGATATTCCACCATCTCAAT
CCGAACATTTACAATAAAGACGAGTATAAGTTATTATACAGGCGTTTCGAGATGTTGGAAATCCACCGAACCCATCGAGCGAAAATCCTCAATCACTCCC
AAGTGGCTGAGATTCTCGACATTCATGGGTGGAGTGCCAGCAAACTCTGGAACGTAGCGAACTATCACTCCCGCCAAGTATGGAATGATTCGGGTGAAAT
CCCCGGCCACGAAGACTTGAAAAGCGAATTGAAGAGTCATACAACTTACAAGGGATTGCACTCGCAGTCCAGTCAGCGCGTTCTGGAGGAACTCGCTGAA
TCCTTCAATTCGTGGTATGGCAAACGCAAGTCTGACGACCGCGCAAACCCACCCGGCTACCGCAAGAAAAACTACTACGACGACGATGGCAACCGTGTCC
ACGAAGAACATCCTCGTTCGACAGTAACGTGGAAGCAGAACGGAATTCGTCACGACACAAAACACAACCGCGTCAGGCTGTCCAAAGGCGCGAGTCACAA
GGAACACCCGAAAGCGTGGGAGTACATCCTTGTCGAATACGAAACTGGTCCCGGTGTCTCGGTTGAGAATCTGAAACAGGTTCGAGCCGTTTACAACAAG
GCCAAACAAGTGTGGGAACTGCATCTCGTCTGCAAAGACGAAATCGAGACGCCTACCGCTCCCGGTAACGAGACAGCAGGTGTTGACCTTGGCATCTGTA
ACTTCGCGGCAGTCGCGTACAGCACCAAGGAAGCCGACTTGTATCCCGGTAATCGCTTGAAGCAGGACGGGTACTACTTCCCGAAAGAAATCGCTAACTG
CGACGACTCGGGAGGCTCTGAGGCAACTCGTCTACACCACAAGTGGTCGGAGCGCCGTACCCACTTCTTCCATAGCCTCGCTAAACACATCGTTGAGAAG
TGTATCGAGCGTGGCGTGGGTAGCATCAACATCGGAAAACTTGCTGGTGTCCGTGAGGACGAAAATGGTGAGCCGAAGAATTGGGGTCGGCACGGCAACC
TCGACTTGCACGGGTGGGCGTTCGACCGCTTCACGAAGATTCTCACCTACAAGGCGAAAGTTGAGGGCATCGAAGTCGTAGAGGTGTCTGAGCGCAACAC
GAGCAAGACGTGTTGCGTGTGCGGTAGGGAAGACTACAATCAGCGTATTGAGCGTGGCCTGTACGTGTGCGAGACGTGTGATGCGGCGTTCAACGCTGAC
GTGAATGGGGCGGAAAACATCCGTCTCGACCTGAATCAAAGTAACTCCAAGTCTGGACCCCGTTTGGGTGGAGATAGGAGTACCGGCTGGTTGGCACAGC
CCGGAGTCTACCTTCATGACTTGTCCCACGGATTCTCACCGAGGGAACAAGTGGTTGACTGCAAACCCTAATATCCCAACGCTCGGGATTCCCGCGTCTT
CAGGCGCGAGAGGATGTCAA
CCGAACATTTACAATAAAGACGAGTATAAGTTATTATACAGGCGTTTCGAGATGTTGGAAATCCACCGAACCCATCGAGCGAAAATCCTCAATCACTCCC
AAGTGGCTGAGATTCTCGACATTCATGGGTGGAGTGCCAGCAAACTCTGGAACGTAGCGAACTATCACTCCCGCCAAGTATGGAATGATTCGGGTGAAAT
CCCCGGCCACGAAGACTTGAAAAGCGAATTGAAGAGTCATACAACTTACAAGGGATTGCACTCGCAGTCCAGTCAGCGCGTTCTGGAGGAACTCGCTGAA
TCCTTCAATTCGTGGTATGGCAAACGCAAGTCTGACGACCGCGCAAACCCACCCGGCTACCGCAAGAAAAACTACTACGACGACGATGGCAACCGTGTCC
ACGAAGAACATCCTCGTTCGACAGTAACGTGGAAGCAGAACGGAATTCGTCACGACACAAAACACAACCGCGTCAGGCTGTCCAAAGGCGCGAGTCACAA
GGAACACCCGAAAGCGTGGGAGTACATCCTTGTCGAATACGAAACTGGTCCCGGTGTCTCGGTTGAGAATCTGAAACAGGTTCGAGCCGTTTACAACAAG
GCCAAACAAGTGTGGGAACTGCATCTCGTCTGCAAAGACGAAATCGAGACGCCTACCGCTCCCGGTAACGAGACAGCAGGTGTTGACCTTGGCATCTGTA
ACTTCGCGGCAGTCGCGTACAGCACCAAGGAAGCCGACTTGTATCCCGGTAATCGCTTGAAGCAGGACGGGTACTACTTCCCGAAAGAAATCGCTAACTG
CGACGACTCGGGAGGCTCTGAGGCAACTCGTCTACACCACAAGTGGTCGGAGCGCCGTACCCACTTCTTCCATAGCCTCGCTAAACACATCGTTGAGAAG
TGTATCGAGCGTGGCGTGGGTAGCATCAACATCGGAAAACTTGCTGGTGTCCGTGAGGACGAAAATGGTGAGCCGAAGAATTGGGGTCGGCACGGCAACC
TCGACTTGCACGGGTGGGCGTTCGACCGCTTCACGAAGATTCTCACCTACAAGGCGAAAGTTGAGGGCATCGAAGTCGTAGAGGTGTCTGAGCGCAACAC
GAGCAAGACGTGTTGCGTGTGCGGTAGGGAAGACTACAATCAGCGTATTGAGCGTGGCCTGTACGTGTGCGAGACGTGTGATGCGGCGTTCAACGCTGAC
GTGAATGGGGCGGAAAACATCCGTCTCGACCTGAATCAAAGTAACTCCAAGTCTGGACCCCGTTTGGGTGGAGATAGGAGTACCGGCTGGTTGGCACAGC
CCGGAGTCTACCTTCATGACTTGTCCCACGGATTCTCACCGAGGGAACAAGTGGTTGACTGCAAACCCTAATATCCCAACGCTCGGGATTCCCGCGTCTT
CAGGCGCGAGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1320 bp | 439 aa | 152 | 1471 | + | No |
AG : TnpB
ORF sequence :
MLEIHRTHRAKILNHSQVAEILDIHGWSASKLWNVANYHSRQVWNDSGEIPGHEDLKSELKSHTTYKGLHSQSSQRVLEELAESFNSWYGKRKSDDRANP
PGYRKKNYYDDDGNRVHEEHPRSTVTWKQNGIRHDTKHNRVRLSKGASHKEHPKAWEYILVEYETGPGVSVENLKQVRAVYNKAKQVWELHLVCKDEIET
PTAPGNETAGVDLGICNFAAVAYSTKEADLYPGNRLKQDGYYFPKEIANCDDSGGSEATRLHHKWSERRTHFFHSLAKHIVEKCIERGVGSINIGKLAGV
REDENGEPKNWGRHGNLDLHGWAFDRFTKILTYKAKVEGIEVVEVSERNTSKTCCVCGREDYNQRIERGLYVCETCDAAFNADVNGAENIRLDLNQSNSK
SGPRLGGDRSTGWLAQPGVYLHDLSHGFSPREQVVDCKP
PGYRKKNYYDDDGNRVHEEHPRSTVTWKQNGIRHDTKHNRVRLSKGASHKEHPKAWEYILVEYETGPGVSVENLKQVRAVYNKAKQVWELHLVCKDEIET
PTAPGNETAGVDLGICNFAAVAYSTKEADLYPGNRLKQDGYYFPKEIANCDDSGGSEATRLHHKWSERRTHFFHSLAKHIVEKCIERGVGSINIGKLAGV
REDENGEPKNWGRHGNLDLHGWAFDRFTKILTYKAKVEGIEVVEVSERNTSKTCCVCGREDYNQRIERGLYVCETCDAAFNADVNGAENIRLDLNQSNSK
SGPRLGGDRSTGWLAQPGVYLHDLSHGFSPREQVVDCKP
Blast result :
Comments
ISHals1 is 92% (TnpB) aa similar to ISHbo10.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Castro Wde,O., Torres-Ballesteros,A.M., Nakayama,C.R., Melo,I.S., Pellizari,V.H., Silva,A. and Ramos,R.T.(2014) Genome Announc 2 (4)
2] Castro Wde,O., Torres-Ballesteros,A.M., Nakayama,C.R., Melo,I.S., Pellizari,V.H., Silva,A. and Ramos,R.T.(2014) Genome Announc 2 (4)