ISHals1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Haloferax sp.
Haloferax sp. ATB1
DNA section
IS Length : 1520 bp

Ends


Left end : ACAGAATCAAGGAGAATACCTGACCCTTTCAGGATGAATCCGACGATTCTCTACACCACCCACCGTTCGACGGCACGTCTGGATATTCCACCATCTCAAT II struct. : Yes
Right end : TTGTCCCACGGATTCTCACCGAGGGAACAAGTGGTTGACTGCAAACCCTAATATCCCAACGCTCGGGATTCCCGCGTCTTCAGGCGCGAGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TTTCGCATATATGTATCAATATTATATTtcaa

DNA sequence

ACAGAATCAAGGAGAATACCTGACCCTTTCAGGATGAATCCGACGATTCTCTACACCACCCACCGTTCGACGGCACGTCTGGATATTCCACCATCTCAAT
CCGAACATTTACAATAAAGACGAGTATAAGTTATTATACAGGCGTTTCGAGATGTTGGAAATCCACCGAACCCATCGAGCGAAAATCCTCAATCACTCCC
AAGTGGCTGAGATTCTCGACATTCATGGGTGGAGTGCCAGCAAACTCTGGAACGTAGCGAACTATCACTCCCGCCAAGTATGGAATGATTCGGGTGAAAT
CCCCGGCCACGAAGACTTGAAAAGCGAATTGAAGAGTCATACAACTTACAAGGGATTGCACTCGCAGTCCAGTCAGCGCGTTCTGGAGGAACTCGCTGAA
TCCTTCAATTCGTGGTATGGCAAACGCAAGTCTGACGACCGCGCAAACCCACCCGGCTACCGCAAGAAAAACTACTACGACGACGATGGCAACCGTGTCC
ACGAAGAACATCCTCGTTCGACAGTAACGTGGAAGCAGAACGGAATTCGTCACGACACAAAACACAACCGCGTCAGGCTGTCCAAAGGCGCGAGTCACAA
GGAACACCCGAAAGCGTGGGAGTACATCCTTGTCGAATACGAAACTGGTCCCGGTGTCTCGGTTGAGAATCTGAAACAGGTTCGAGCCGTTTACAACAAG
GCCAAACAAGTGTGGGAACTGCATCTCGTCTGCAAAGACGAAATCGAGACGCCTACCGCTCCCGGTAACGAGACAGCAGGTGTTGACCTTGGCATCTGTA
ACTTCGCGGCAGTCGCGTACAGCACCAAGGAAGCCGACTTGTATCCCGGTAATCGCTTGAAGCAGGACGGGTACTACTTCCCGAAAGAAATCGCTAACTG
CGACGACTCGGGAGGCTCTGAGGCAACTCGTCTACACCACAAGTGGTCGGAGCGCCGTACCCACTTCTTCCATAGCCTCGCTAAACACATCGTTGAGAAG
TGTATCGAGCGTGGCGTGGGTAGCATCAACATCGGAAAACTTGCTGGTGTCCGTGAGGACGAAAATGGTGAGCCGAAGAATTGGGGTCGGCACGGCAACC
TCGACTTGCACGGGTGGGCGTTCGACCGCTTCACGAAGATTCTCACCTACAAGGCGAAAGTTGAGGGCATCGAAGTCGTAGAGGTGTCTGAGCGCAACAC
GAGCAAGACGTGTTGCGTGTGCGGTAGGGAAGACTACAATCAGCGTATTGAGCGTGGCCTGTACGTGTGCGAGACGTGTGATGCGGCGTTCAACGCTGAC
GTGAATGGGGCGGAAAACATCCGTCTCGACCTGAATCAAAGTAACTCCAAGTCTGGACCCCGTTTGGGTGGAGATAGGAGTACCGGCTGGTTGGCACAGC
CCGGAGTCTACCTTCATGACTTGTCCCACGGATTCTCACCGAGGGAACAAGTGGTTGACTGCAAACCCTAATATCCCAACGCTCGGGATTCCCGCGTCTT
CAGGCGCGAGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1320 bp439 aa1521471+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLEIHRTHRAKILNHSQVAEILDIHGWSASKLWNVANYHSRQVWNDSGEIPGHEDLKSELKSHTTYKGLHSQSSQRVLEELAESFNSWYGKRKSDDRANP
PGYRKKNYYDDDGNRVHEEHPRSTVTWKQNGIRHDTKHNRVRLSKGASHKEHPKAWEYILVEYETGPGVSVENLKQVRAVYNKAKQVWELHLVCKDEIET
PTAPGNETAGVDLGICNFAAVAYSTKEADLYPGNRLKQDGYYFPKEIANCDDSGGSEATRLHHKWSERRTHFFHSLAKHIVEKCIERGVGSINIGKLAGV
REDENGEPKNWGRHGNLDLHGWAFDRFTKILTYKAKVEGIEVVEVSERNTSKTCCVCGREDYNQRIERGLYVCETCDAAFNADVNGAENIRLDLNQSNSK
SGPRLGGDRSTGWLAQPGVYLHDLSHGFSPREQVVDCKP

 

Blast result :
Comments
ISHals1 is 92% (TnpB) aa similar to ISHbo10.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Castro Wde,O., Torres-Ballesteros,A.M., Nakayama,C.R., Melo,I.S., Pellizari,V.H., Silva,A. and Ramos,R.T.(2014) Genome Announc 2 (4)