ISPa119
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| JN695267 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa Pa119 |
DNA section
IS Length : 1378 bp
Ends
IR Length : 13
IRL : tgctgtaATGGACTCTCCCCGCGCCACGGTTCTATACCAAGAATGGTGGT
IRR : ----tatATGGACTCTCCCCACAAGCAGTGAGCAAAGCTTTTCCTAACCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCCGGTTGAG | CGAATTGTTA | 0 |
DNA sequence
TGCTGTAATGGACTCTCCCCGCGCCACGGTTCTATACCAAGAATGGTGGTGACTGATGATTGGGAGAGGCGTTATGAAGCGAATTGCGGTTGATCTGGCC
AAGTCCGTTTACCAAATTGCCGAGAGTGTCCGTTCCGGCCAAGTGGTGCAGCGTAAACGGCTGAACCGAGAGGCGTTCAGGCGATATATACAGGAGCAGG
GCGAGACGGTCGAGTGGGTGATGGAGGCCTGTGGTACGGCGCATTACTGGGGCCGTGTGGCACAGTCTCTGGGGCATTGGGTGAAGCTGATCCATCCCCG
GTATGTGCGCCCGTATCGCCGTCGCAACAAGACCGACCGTAACGACTGCGATGCGATGCTGGAAGCGGCGCGCTGCAAAGATATCCATCCTGTGCCGGTG
AAAACCCACGAACAGCAACAGCTGCAGCAATTGCATGGGCTGCGCGAAACCTGGAAGAAGAGCCGCACTCAGCGGATTAACCTATTGCGCGGCATCCTGC
GCGAGGCGGGTATCGAAGCCCCTGCCGCCACCGCCGCGTTTATCCGCGCCGCCCACGAGCTGGTTGATCGAGCAGAGCTGGCGCCCTTGAGCCATCAACT
GCATATCGTCCTGGCAGAAATCAACCTGCACGAACAGTGCATGATCGAGTGCGAGCAGCAACTCAAGCGCTGGCATGCCAGTGATGAGGTGGTGCGCAAG
CTCGATGAGGTAAGCGGTATTGGTCTGCTGACTGCCAGCGCCCTGACAACCGCAGTCGGCAAGCCCGAGCGTTTTGCCAATGGTCGCCAGCTCAGCGCTT
GGTTGGGCATGACGCCGCGCGAATTCAGCAGCGGTGACCGGCGCAAACTGGGTCACATCAGCCGACAAGGCAACGTCTATGTGCGCACCCTGCTGATCCA
CGGCTCGCGAGCGGCCTTGCTGGCGGCGCAACGATGTCAGGCCCGCACGCCGGAGAAACTGACCCAGTTACAACGCTGGGCCGTTGAGACGGCGGCACGT
ATCGGCCACAACAAAGCGGCTGTGGCCCTGGCCAACAAGTTGGTACGGATCTGCTGGGCGGTGTGGTGCAACGAGCGGCGTTTCAGTGGTGACTGGCAAA
GCGTAAAGCCCGCCTGACGGCGGAGTAATCAGCAAGGTGTGATGGATTTCTTGTGGTTGTGGTGAGCAGCAACACTGTCGAAACAGGCGAGTCCTGCAAC
GGAATAAGGCCGATAACAATCATGATCTTCGTGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAGTGGCCAGGGCAGTAAAGCCCAAAACAG
GCCGGATATACGAATGCAACCGCGCTGACGACAGGTTAGGAAAAGCTTTGCTCACTGCTTGTGGGGAGAGTCCATATA
AAGTCCGTTTACCAAATTGCCGAGAGTGTCCGTTCCGGCCAAGTGGTGCAGCGTAAACGGCTGAACCGAGAGGCGTTCAGGCGATATATACAGGAGCAGG
GCGAGACGGTCGAGTGGGTGATGGAGGCCTGTGGTACGGCGCATTACTGGGGCCGTGTGGCACAGTCTCTGGGGCATTGGGTGAAGCTGATCCATCCCCG
GTATGTGCGCCCGTATCGCCGTCGCAACAAGACCGACCGTAACGACTGCGATGCGATGCTGGAAGCGGCGCGCTGCAAAGATATCCATCCTGTGCCGGTG
AAAACCCACGAACAGCAACAGCTGCAGCAATTGCATGGGCTGCGCGAAACCTGGAAGAAGAGCCGCACTCAGCGGATTAACCTATTGCGCGGCATCCTGC
GCGAGGCGGGTATCGAAGCCCCTGCCGCCACCGCCGCGTTTATCCGCGCCGCCCACGAGCTGGTTGATCGAGCAGAGCTGGCGCCCTTGAGCCATCAACT
GCATATCGTCCTGGCAGAAATCAACCTGCACGAACAGTGCATGATCGAGTGCGAGCAGCAACTCAAGCGCTGGCATGCCAGTGATGAGGTGGTGCGCAAG
CTCGATGAGGTAAGCGGTATTGGTCTGCTGACTGCCAGCGCCCTGACAACCGCAGTCGGCAAGCCCGAGCGTTTTGCCAATGGTCGCCAGCTCAGCGCTT
GGTTGGGCATGACGCCGCGCGAATTCAGCAGCGGTGACCGGCGCAAACTGGGTCACATCAGCCGACAAGGCAACGTCTATGTGCGCACCCTGCTGATCCA
CGGCTCGCGAGCGGCCTTGCTGGCGGCGCAACGATGTCAGGCCCGCACGCCGGAGAAACTGACCCAGTTACAACGCTGGGCCGTTGAGACGGCGGCACGT
ATCGGCCACAACAAAGCGGCTGTGGCCCTGGCCAACAAGTTGGTACGGATCTGCTGGGCGGTGTGGTGCAACGAGCGGCGTTTCAGTGGTGACTGGCAAA
GCGTAAAGCCCGCCTGACGGCGGAGTAATCAGCAAGGTGTGATGGATTTCTTGTGGTTGTGGTGAGCAGCAACACTGTCGAAACAGGCGAGTCCTGCAAC
GGAATAAGGCCGATAACAATCATGATCTTCGTGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAGTGGCCAGGGCAGTAAAGCCCAAAACAG
GCCGGATATACGAATGCAACCGCGCTGACGACAGGTTAGGAAAAGCTTTGCTCACTGCTTGTGGGGAGAGTCCATATA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1062 bp | 353 aa | 56 | 1117 | + | No |
Chemistry : DEDD
ORF sequence :
MIGRGVMKRIAVDLAKSVYQIAESVRSGQVVQRKRLNREAFRRYIQEQGETVEWVMEACGTAHYWGRVAQSLGHWVKLIHPRYVRPYRRRNKTDRNDCDA
MLEAARCKDIHPVPVKTHEQQQLQQLHGLRETWKKSRTQRINLLRGILREAGIEAPAATAAFIRAAHELVDRAELAPLSHQLHIVLAEINLHEQCMIECE
QQLKRWHASDEVVRKLDEVSGIGLLTASALTTAVGKPERFANGRQLSAWLGMTPREFSSGDRRKLGHISRQGNVYVRTLLIHGSRAALLAAQRCQARTPE
KLTQLQRWAVETAARIGHNKAAVALANKLVRICWAVWCNERRFSGDWQSVKPA
MLEAARCKDIHPVPVKTHEQQQLQQLHGLRETWKKSRTQRINLLRGILREAGIEAPAATAAFIRAAHELVDRAELAPLSHQLHIVLAEINLHEQCMIECE
QQLKRWHASDEVVRKLDEVSGIGLLTASALTTAVGKPERFANGRQLSAWLGMTPREFSSGDRRKLGHISRQGNVYVRTLLIHGSRAALLAAQRCQARTPE
KLTQLQRWAVETAARIGHNKAAVALANKLVRICWAVWCNERRFSGDWQSVKPA
Blast result :
Comments
ISPa119 is 94% aa similar to ISPa53.
The IR of this IS are not at its termini. In the IS sequence as given 7 nt separate IRL from the left-hand end of the element and 3 nt separate IRR from the right-hand end. This IS is found within the attC site of a gene cassette in an integron.
The IR of this IS are not at its termini. In the IS sequence as given 7 nt separate IRL from the left-hand end of the element and 3 nt separate IRR from the right-hand end. This IS is found within the attC site of a gene cassette in an integron.
References
1] Sally Partridge (2015) Direct submission
2] Merkier,A.K., Castaneda,N.C., Pasteran,F., Jorda Vargas,L.,Galanternick,L., Procopio,A., Vazquez,M. and Centron,D. (2011) Direct submission GenBank.
2] Merkier,A.K., Castaneda,N.C., Pasteran,F., Jorda Vargas,L.,Galanternick,L., Procopio,A., Vazquez,M. and Centron,D. (2011) Direct submission GenBank.