ISHamu1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOLN01000006 | ND | Haloferax mucosum | Haloferax mucosum ATCC BAA-1512 |
DNA section
IS Length : 1475 bp
Ends
Left end : GGAAGTTGCAAGGCTAAAACCCCGCCCTTCAGGGCGGGGATACAGCCGACAACTCCTCCACTAGCCACGTTCGATGGCACGGTTGGATATTCCACGCCAA II struct. : Yes
Right end : TGAGGGTGTTTTCGCCCCACGAGAACAGGTTGCTAACCGCGAATCTTAATATCCCAACGCGGTTGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTCTGTGCGTAG | TTAT | TCGCCGTCGCCC | tcaa |
DNA sequence
GGAAGTTGCAAGGCTAAAACCCCGCCCTTCAGGGCGGGGATACAGCCGACAACTCCTCCACTAGCCACGTTCGATGGCACGGTTGGATATTCCACGCCAA
CCGACACCATTAATAAAACGGCATTCATAACCAGTTATGACGCCAGAAAATGGGCCGAACCATCCGAACCTTCGAGGCCACCATTACGAACCAGCAACAG
GTTCGTGACGACCTTGACCAACTCGGATGGGCCGCCTCCAAACTCTGGAACGTCGGTCGCTACTACGCACAAGAACGGTGGGACGAAACGGGCGAGATTC
CCGACGACGGGGAACTCAAAACCGAACTCAAAGACCACGAACGCTACACGGACTTACATTCTCAATCCAGTCAGCGCGTTCTCGAAGAACTCGCTGAAGC
GTTCAACGGTTGGTTCAGTAAGCGTCGGAACGGCGACGACCGTGCCCGACCGCCCGGCTACCGCAAAAACGGAGACTCCCACCCGCGTTCAACCGTGTCG
TTCAAAGCGGCTGGCTTCAAGCACGACGCACAGTTCACCCGTGTCCGCCTCTCGAAAGGACGCAACCTCAAAGACCACCGGTCGGACTTCATCCTGTGTG
AGTACCAGACTCGCCCCGATGTTGACCTGACCGAGTGGGACATCCAACAGGTTCGCGCCGTCTACAAGCGCGACGAGTGGCGACTCCAGTTCGTCTGTCG
CACCACTATCGACCCGGAACCATCGGGCGATGAGGTGGCCGGTGTTGACCTCGGGATTTGCAACTTTGCCGCCGTCTCGTTCGGTGGTGAATCGGTGTTG
TACCCCGGTGGCGCACTCAAAGAGGACGAATACTACTTCACGAAACAGAAAGCCAAGTGCGACGATTCTTCGTCCCGAGAGGCCACTCGTCTTGACCGGA
AGCGTACTGGTCGCCGGACACACTTCTTACACGCACTCTCGAAAGCGATTGTTGAGGAGTGTACCGAACGAGGTGTCGGTACGCTTGTCGTTGGCGACCT
TGGCGGCATCCGAGAAGACGACGAGGACGGCAAACCTCGGAATTGGGGCGACCACGGCAATCTCGACTTGCACGGGTGGGCGTTCGACCGCTTCACGACG
CTTCTCGACTACAAGGCAGAAGCGGAAGGTATCGACGTGGCGTTGGTGTCGGAACGCGATACGTCAAAGTCGTGTTCGGCGTGCGGCCACACCGACGATA
GTCAGCGAGTTGAACGTGGCCTGTACGTGTGTGAAGCGTGCGATACGGTGGCGAACGCGGACGTGAATGGTGCGGAGAATATTCGACAAAAGGTACTCCC
GAGTCTCGCCACGGATGGCGGTGATAGGGATAACGGCTGGTTGGCACAGCCAGCGGTTCACCTGTTCGACCGTAGTGAGGGTGTTTTCGCCCCACGAGAA
CAGGTTGCTAACCGCGAATCTTAATATCCCAACGCGGTTGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
CCGACACCATTAATAAAACGGCATTCATAACCAGTTATGACGCCAGAAAATGGGCCGAACCATCCGAACCTTCGAGGCCACCATTACGAACCAGCAACAG
GTTCGTGACGACCTTGACCAACTCGGATGGGCCGCCTCCAAACTCTGGAACGTCGGTCGCTACTACGCACAAGAACGGTGGGACGAAACGGGCGAGATTC
CCGACGACGGGGAACTCAAAACCGAACTCAAAGACCACGAACGCTACACGGACTTACATTCTCAATCCAGTCAGCGCGTTCTCGAAGAACTCGCTGAAGC
GTTCAACGGTTGGTTCAGTAAGCGTCGGAACGGCGACGACCGTGCCCGACCGCCCGGCTACCGCAAAAACGGAGACTCCCACCCGCGTTCAACCGTGTCG
TTCAAAGCGGCTGGCTTCAAGCACGACGCACAGTTCACCCGTGTCCGCCTCTCGAAAGGACGCAACCTCAAAGACCACCGGTCGGACTTCATCCTGTGTG
AGTACCAGACTCGCCCCGATGTTGACCTGACCGAGTGGGACATCCAACAGGTTCGCGCCGTCTACAAGCGCGACGAGTGGCGACTCCAGTTCGTCTGTCG
CACCACTATCGACCCGGAACCATCGGGCGATGAGGTGGCCGGTGTTGACCTCGGGATTTGCAACTTTGCCGCCGTCTCGTTCGGTGGTGAATCGGTGTTG
TACCCCGGTGGCGCACTCAAAGAGGACGAATACTACTTCACGAAACAGAAAGCCAAGTGCGACGATTCTTCGTCCCGAGAGGCCACTCGTCTTGACCGGA
AGCGTACTGGTCGCCGGACACACTTCTTACACGCACTCTCGAAAGCGATTGTTGAGGAGTGTACCGAACGAGGTGTCGGTACGCTTGTCGTTGGCGACCT
TGGCGGCATCCGAGAAGACGACGAGGACGGCAAACCTCGGAATTGGGGCGACCACGGCAATCTCGACTTGCACGGGTGGGCGTTCGACCGCTTCACGACG
CTTCTCGACTACAAGGCAGAAGCGGAAGGTATCGACGTGGCGTTGGTGTCGGAACGCGATACGTCAAAGTCGTGTTCGGCGTGCGGCCACACCGACGATA
GTCAGCGAGTTGAACGTGGCCTGTACGTGTGTGAAGCGTGCGATACGGTGGCGAACGCGGACGTGAATGGTGCGGAGAATATTCGACAAAAGGTACTCCC
GAGTCTCGCCACGGATGGCGGTGATAGGGATAACGGCTGGTTGGCACAGCCAGCGGTTCACCTGTTCGACCGTAGTGAGGGTGTTTTCGCCCCACGAGAA
CAGGTTGCTAACCGCGAATCTTAATATCCCAACGCGGTTGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 150 | 1424 | + | No |
AG : TnpB
ORF sequence :
MGRTIRTFEATITNQQQVRDDLDQLGWAASKLWNVGRYYAQERWDETGEIPDDGELKTELKDHERYTDLHSQSSQRVLEELAEAFNGWFSKRRNGDDRAR
PPGYRKNGDSHPRSTVSFKAAGFKHDAQFTRVRLSKGRNLKDHRSDFILCEYQTRPDVDLTEWDIQQVRAVYKRDEWRLQFVCRTTIDPEPSGDEVAGVD
LGICNFAAVSFGGESVLYPGGALKEDEYYFTKQKAKCDDSSSREATRLDRKRTGRRTHFLHALSKAIVEECTERGVGTLVVGDLGGIREDDEDGKPRNWG
DHGNLDLHGWAFDRFTTLLDYKAEAEGIDVALVSERDTSKSCSACGHTDDSQRVERGLYVCEACDTVANADVNGAENIRQKVLPSLATDGGDRDNGWLAQ
PAVHLFDRSEGVFAPREQVANRES
PPGYRKNGDSHPRSTVSFKAAGFKHDAQFTRVRLSKGRNLKDHRSDFILCEYQTRPDVDLTEWDIQQVRAVYKRDEWRLQFVCRTTIDPEPSGDEVAGVD
LGICNFAAVSFGGESVLYPGGALKEDEYYFTKQKAKCDDSSSREATRLDRKRTGRRTHFLHALSKAIVEECTERGVGTLVVGDLGGIREDDEDGKPRNWG
DHGNLDLHGWAFDRFTTLLDYKAEAEGIDVALVSERDTSKSCSACGHTDDSQRVERGLYVCEACDTVANADVNGAENIRQKVLPSLATDGGDRDNGWLAQ
PAVHLFDRSEGVFAPREQVANRES
Blast result :
Comments
ISHamu1 is 95% (TnpB) aa similar to ISHtu4.
References