ISHam2
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOLW01000035 | ND | Haloarcula amylolytica | Haloarcula amylolytica JCM 13557 |
DNA section
IS Length : 1580 bp
Ends
Left end : AGAGATTCGAGGCGAATACACCCGCCTTCCCGTGAGGGACGAGTGTTCCGACCGCTAGTCGGAACCGAGGACCGAACAGGCGGGTGATGAAGCCGACACT II struct. : Yes
Right end : CTCTCCTGCGGATTCCAACCGCAGACAGAGGTGGTGGACTGTAGATCTTAATATCCCCACGCTTGGGATTCCTCCGCGTTCACGCGGAGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ACCTGTGCGGGT | TTAT | TAGTGTGTCAAT | tcaa |
DNA sequence
AGAGATTCGAGGCGAATACACCCGCCTTCCCGTGAGGGACGAGTGTTCCGACCGCTAGTCGGAACCGAGGACCGAACAGGCGGGTGATGAAGCCGACACT
CCGATGGTCAACCCGCCGGCTACACCACGTTTGGATATTCAACGCTAACCACAACATTTACAATTTAGACTGTTATAACCGCTTATAGAGCCGTTCCAAA
CGATGCTGGAAGTTCACCGCACCCACCAAGCGAAAATCTGCAACCACTCACAGGTTGCAGAGTCGCTCGACCGGCATGGGTGGAGTGCCAGCAAACTCTG
GAACGTCGCCAACTATCACGCCCGCAACGTCTGGGACGAAACCGGCGAGATTCCCGACCATGAAGACTTGAAACGCGAGTTGAAAGACCACACCAAATAC
AATGGGCTGCATAGCCAGTCCAGTCAGCGAGTTCTTGAGGAGCTTGCTGAAAGCTTTCACTCGTGGTATCAGAAACGCAAGTCCGATGACCGTGCGAACC
CGCCGGGCTACCGCAAACGCAACTACTACGACCAAGACGGCAACCGTGTTCACGAAGAACACCCGCGTTCCACCGTGACATGGAAGCAGAACGGGTTCAA
GCACGACAAGAAACACAACAAGATTCGCCTGTCGAAAGGCGCGAATCACAAAGAACACCCGAAAGCGTGGGAGTATATGCTGGTCGAATACGAAACCCGG
CCTGACGCGACTGTTGAGAACGTCCAACAGGTGCGTGCCGTCTACAACCGTGCGAAAGGTCAGTGGGAGCTTCACATCGTCTGCAAAGACGAGATTGAAC
CCCCAGACGCTCCCGGTGATGAAACCGCTGGCATCGACCTCGGCATCTGCAATTTCGCCGCCGTTGCCTACAGTACCGAAGAAGCCGACCTGTATCCGGG
CAACCGTCTGAAACAAGACGGGTACTACTTCCCGAAAGAAATCGCCAAGTGCGACGACTCAGGCGGCAAGCGAGCAACCCGACTCCATGCGAAATGGAGT
GAACGCCGCACCCACTTCTTCCACAGTCTCGCCAAGCACATCGTTGAGCGGTGTGTTGAGAAACAGGTTGGCCGAATCAATGTTGGTGACTTGGAAGGAG
TGCGTGAAGACGGCGATGGCGAGGCGAAAAACTGGGGTCGGCACGGCAACCTCGACTTGCACGGCTGGGCGTTCGACCGCCTCACTTCGATTCTCACGTA
CAAGGCGAAAGTGGAAGGTATCGAAGTGAACGAAGTGGACGAACGCGATACCAGTAAGACGTGTTGCGTGTGCGGGAAAACAGATGAGAATCAGCGTGTT
GAACGTGGTCTGTACGTGTGCGAGGAACACGATGATGCGTTCAACGCGGATGTGAATGGGGCGGAGAACATCCGTCTCGAGATAAACAGCGACGATGAAA
GTAACTCCGAGTCTTCCGGGCAGTTGTCCGGGGATAGGTGTACCGGCTGGTTGGCACAGCCTTCAGTCTACCTGTACGACCTCTCCTGCGGATTCCAACC
GCAGACAGAGGTGGTGGACTGTAGATCTTAATATCCCCACGCTTGGGATTCCTCCGCGTTCACGCGGAGGAGGATGTCAA
CCGATGGTCAACCCGCCGGCTACACCACGTTTGGATATTCAACGCTAACCACAACATTTACAATTTAGACTGTTATAACCGCTTATAGAGCCGTTCCAAA
CGATGCTGGAAGTTCACCGCACCCACCAAGCGAAAATCTGCAACCACTCACAGGTTGCAGAGTCGCTCGACCGGCATGGGTGGAGTGCCAGCAAACTCTG
GAACGTCGCCAACTATCACGCCCGCAACGTCTGGGACGAAACCGGCGAGATTCCCGACCATGAAGACTTGAAACGCGAGTTGAAAGACCACACCAAATAC
AATGGGCTGCATAGCCAGTCCAGTCAGCGAGTTCTTGAGGAGCTTGCTGAAAGCTTTCACTCGTGGTATCAGAAACGCAAGTCCGATGACCGTGCGAACC
CGCCGGGCTACCGCAAACGCAACTACTACGACCAAGACGGCAACCGTGTTCACGAAGAACACCCGCGTTCCACCGTGACATGGAAGCAGAACGGGTTCAA
GCACGACAAGAAACACAACAAGATTCGCCTGTCGAAAGGCGCGAATCACAAAGAACACCCGAAAGCGTGGGAGTATATGCTGGTCGAATACGAAACCCGG
CCTGACGCGACTGTTGAGAACGTCCAACAGGTGCGTGCCGTCTACAACCGTGCGAAAGGTCAGTGGGAGCTTCACATCGTCTGCAAAGACGAGATTGAAC
CCCCAGACGCTCCCGGTGATGAAACCGCTGGCATCGACCTCGGCATCTGCAATTTCGCCGCCGTTGCCTACAGTACCGAAGAAGCCGACCTGTATCCGGG
CAACCGTCTGAAACAAGACGGGTACTACTTCCCGAAAGAAATCGCCAAGTGCGACGACTCAGGCGGCAAGCGAGCAACCCGACTCCATGCGAAATGGAGT
GAACGCCGCACCCACTTCTTCCACAGTCTCGCCAAGCACATCGTTGAGCGGTGTGTTGAGAAACAGGTTGGCCGAATCAATGTTGGTGACTTGGAAGGAG
TGCGTGAAGACGGCGATGGCGAGGCGAAAAACTGGGGTCGGCACGGCAACCTCGACTTGCACGGCTGGGCGTTCGACCGCCTCACTTCGATTCTCACGTA
CAAGGCGAAAGTGGAAGGTATCGAAGTGAACGAAGTGGACGAACGCGATACCAGTAAGACGTGTTGCGTGTGCGGGAAAACAGATGAGAATCAGCGTGTT
GAACGTGGTCTGTACGTGTGCGAGGAACACGATGATGCGTTCAACGCGGATGTGAATGGGGCGGAGAACATCCGTCTCGAGATAAACAGCGACGATGAAA
GTAACTCCGAGTCTTCCGGGCAGTTGTCCGGGGATAGGTGTACCGGCTGGTTGGCACAGCCTTCAGTCTACCTGTACGACCTCTCCTGCGGATTCCAACC
GCAGACAGAGGTGGTGGACTGTAGATCTTAATATCCCCACGCTTGGGATTCCTCCGCGTTCACGCGGAGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1329 bp | 442 aa | 203 | 1531 | + | No |
AG : TnpB
ORF sequence :
MLEVHRTHQAKICNHSQVAESLDRHGWSASKLWNVANYHARNVWDETGEIPDHEDLKRELKDHTKYNGLHSQSSQRVLEELAESFHSWYQKRKSDDRANP
PGYRKRNYYDQDGNRVHEEHPRSTVTWKQNGFKHDKKHNKIRLSKGANHKEHPKAWEYMLVEYETRPDATVENVQQVRAVYNRAKGQWELHIVCKDEIEP
PDAPGDETAGIDLGICNFAAVAYSTEEADLYPGNRLKQDGYYFPKEIAKCDDSGGKRATRLHAKWSERRTHFFHSLAKHIVERCVEKQVGRINVGDLEGV
REDGDGEAKNWGRHGNLDLHGWAFDRLTSILTYKAKVEGIEVNEVDERDTSKTCCVCGKTDENQRVERGLYVCEEHDDAFNADVNGAENIRLEINSDDES
NSESSGQLSGDRCTGWLAQPSVYLYDLSCGFQPQTEVVDCRS
PGYRKRNYYDQDGNRVHEEHPRSTVTWKQNGFKHDKKHNKIRLSKGANHKEHPKAWEYMLVEYETRPDATVENVQQVRAVYNRAKGQWELHIVCKDEIEP
PDAPGDETAGIDLGICNFAAVAYSTEEADLYPGNRLKQDGYYFPKEIAKCDDSGGKRATRLHAKWSERRTHFFHSLAKHIVERCVEKQVGRINVGDLEGV
REDGDGEAKNWGRHGNLDLHGWAFDRLTSILTYKAKVEGIEVNEVDERDTSKTCCVCGKTDENQRVERGLYVCEEHDDAFNADVNGAENIRLEINSDDES
NSESSGQLSGDRCTGWLAQPSVYLYDLSCGFQPQTEVVDCRS
Blast result :
Comments
ISHam2 is 91% (TnpB) aa similar to ISHarch11.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.