ISHam2

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOLW01000035 ND Haloarcula amylolytica
Haloarcula amylolytica JCM 13557
DNA section
IS Length : 1580 bp

Ends


Left end : AGAGATTCGAGGCGAATACACCCGCCTTCCCGTGAGGGACGAGTGTTCCGACCGCTAGTCGGAACCGAGGACCGAACAGGCGGGTGATGAAGCCGACACT II struct. : Yes
Right end : CTCTCCTGCGGATTCCAACCGCAGACAGAGGTGGTGGACTGTAGATCTTAATATCCCCACGCTTGGGATTCCTCCGCGTTCACGCGGAGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ACCTGTGCGGGTTTATTAGTGTGTCAATtcaa

DNA sequence

AGAGATTCGAGGCGAATACACCCGCCTTCCCGTGAGGGACGAGTGTTCCGACCGCTAGTCGGAACCGAGGACCGAACAGGCGGGTGATGAAGCCGACACT
CCGATGGTCAACCCGCCGGCTACACCACGTTTGGATATTCAACGCTAACCACAACATTTACAATTTAGACTGTTATAACCGCTTATAGAGCCGTTCCAAA
CGATGCTGGAAGTTCACCGCACCCACCAAGCGAAAATCTGCAACCACTCACAGGTTGCAGAGTCGCTCGACCGGCATGGGTGGAGTGCCAGCAAACTCTG
GAACGTCGCCAACTATCACGCCCGCAACGTCTGGGACGAAACCGGCGAGATTCCCGACCATGAAGACTTGAAACGCGAGTTGAAAGACCACACCAAATAC
AATGGGCTGCATAGCCAGTCCAGTCAGCGAGTTCTTGAGGAGCTTGCTGAAAGCTTTCACTCGTGGTATCAGAAACGCAAGTCCGATGACCGTGCGAACC
CGCCGGGCTACCGCAAACGCAACTACTACGACCAAGACGGCAACCGTGTTCACGAAGAACACCCGCGTTCCACCGTGACATGGAAGCAGAACGGGTTCAA
GCACGACAAGAAACACAACAAGATTCGCCTGTCGAAAGGCGCGAATCACAAAGAACACCCGAAAGCGTGGGAGTATATGCTGGTCGAATACGAAACCCGG
CCTGACGCGACTGTTGAGAACGTCCAACAGGTGCGTGCCGTCTACAACCGTGCGAAAGGTCAGTGGGAGCTTCACATCGTCTGCAAAGACGAGATTGAAC
CCCCAGACGCTCCCGGTGATGAAACCGCTGGCATCGACCTCGGCATCTGCAATTTCGCCGCCGTTGCCTACAGTACCGAAGAAGCCGACCTGTATCCGGG
CAACCGTCTGAAACAAGACGGGTACTACTTCCCGAAAGAAATCGCCAAGTGCGACGACTCAGGCGGCAAGCGAGCAACCCGACTCCATGCGAAATGGAGT
GAACGCCGCACCCACTTCTTCCACAGTCTCGCCAAGCACATCGTTGAGCGGTGTGTTGAGAAACAGGTTGGCCGAATCAATGTTGGTGACTTGGAAGGAG
TGCGTGAAGACGGCGATGGCGAGGCGAAAAACTGGGGTCGGCACGGCAACCTCGACTTGCACGGCTGGGCGTTCGACCGCCTCACTTCGATTCTCACGTA
CAAGGCGAAAGTGGAAGGTATCGAAGTGAACGAAGTGGACGAACGCGATACCAGTAAGACGTGTTGCGTGTGCGGGAAAACAGATGAGAATCAGCGTGTT
GAACGTGGTCTGTACGTGTGCGAGGAACACGATGATGCGTTCAACGCGGATGTGAATGGGGCGGAGAACATCCGTCTCGAGATAAACAGCGACGATGAAA
GTAACTCCGAGTCTTCCGGGCAGTTGTCCGGGGATAGGTGTACCGGCTGGTTGGCACAGCCTTCAGTCTACCTGTACGACCTCTCCTGCGGATTCCAACC
GCAGACAGAGGTGGTGGACTGTAGATCTTAATATCCCCACGCTTGGGATTCCTCCGCGTTCACGCGGAGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1329 bp442 aa2031531+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLEVHRTHQAKICNHSQVAESLDRHGWSASKLWNVANYHARNVWDETGEIPDHEDLKRELKDHTKYNGLHSQSSQRVLEELAESFHSWYQKRKSDDRANP
PGYRKRNYYDQDGNRVHEEHPRSTVTWKQNGFKHDKKHNKIRLSKGANHKEHPKAWEYMLVEYETRPDATVENVQQVRAVYNRAKGQWELHIVCKDEIEP
PDAPGDETAGIDLGICNFAAVAYSTEEADLYPGNRLKQDGYYFPKEIAKCDDSGGKRATRLHAKWSERRTHFFHSLAKHIVERCVEKQVGRINVGDLEGV
REDGDGEAKNWGRHGNLDLHGWAFDRLTSILTYKAKVEGIEVNEVDERDTSKTCCVCGKTDENQRVERGLYVCEEHDDAFNADVNGAENIRLEINSDDES
NSESSGQLSGDRCTGWLAQPSVYLYDLSCGFQPQTEVVDCRS

 

Blast result :
Comments
ISHam2 is 91% (TnpB) aa similar to ISHarch11.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.