ISNhu4
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOIM01000037 | ND | Natrialba hulunbeirensis | Natrialba hulunbeirensis JCM 10989 |
DNA section
IS Length : 1474 bp
Ends
Left end : ACGCGGTCAAGGCAGAGTACCACGGGTCACCTGACCCGTGGGTGAATGCCGACAAATCGCCATCTTTACAACAATTAACGACAATTAAATTATTGTGCAA II struct. : Yes
Right end : GCAAGACTCACAGAGTCGAGCGCGAGCGGAATTAAAGCCTGTTGCGTCCACGGCGGACTAGACACAGACGCCCCGTGTCACCCGACGCGGGGTACTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGCGATTGCTGG | TCTAT | GCGGGGCTGCCG | tcac |
DNA sequence
ACGCGGTCAAGGCAGAGTACCACGGGTCACCTGACCCGTGGGTGAATGCCGACAAATCGCCATCTTTACAACAATTAACGACAATTAAATTATTGTGCAA
GATGCAGGACTAACCCAGACACTCTCCTTTGGACTCACCCTCCAAACAGGTAGTTCTGACAACTTGCACGAAGGCTGTCTCGAAGCCAGACGGGTCCGCA
ACGAAGTCAACCGACTCGACAAAGAAGGCTGGGACTGGAACGATATCCACGACACCGTTGTGGACAACTCCTACCACGTCAAAAACACCACGCAACTTCT
CGTCAAAAAAGCTCTCAAAGAGCTTGAGACGTACCACGACCACAAAGACGACGAGTGGGGCCGACCATACCCGTACATCCACGAAACGTATCCCCTACGG
ATGAACCACAACGAGGGCTACGCCCTCACCGTGGACGATTCAGGAGACATTCAGTTCCGAATCAGCTACAAACCGTACAACTACGTCAAAGGCGTGCTTC
GAGGCAGTCCAGACCACCTTGAACAAGTAAAAACTGCACTTCGCTCTGATGCGTGGCGAGTAGGTGTAGCTGAACTCGTGTACAAACACGACGAGTGGCG
ACTCCACGTCTCAGTCACGCATAAAAGCCGTACTGTAGCACCTCCAGACAATGCTGGCACGGTTGTTGGAGTGGACATTAACGAGGATTGCGTCGCACTC
GCCGCGATGAATCGAGACACAGGAGATGTGCTCGACTCGGTGGTCATCGAATACCCTGAGATCAAGCGCATTCGTCATGAGTTCTTCACGAAGCGCAAGC
GGATGCAAAAGGTCGGTCAAACAGCGTTCGAGAACGTTGTCCGCACAGAGGAACGGGACTTCGTTCACGACCACCTCCACAAAGTATCCCGTGACGTAAC
CAGATGGGTTTCCCAATTCAACGACCCGGTACTCGTCTTTGAAGACCTCAAAGACATGCGAGACTCACTCGATTACGGCACGCGGATGAACCGCCGCTTA
CACTCACTGCCGTTCGCGGCGCTCCGCGACACGGTGACGTACAAAACTGCATGGAACGGTGTTCCCTCAGATGACGTGAACCCCGAGTACACGTCCCAGC
GGTGCCCTCGCACGGAGTGTTTGCACACGGAGCGAGCGAATCGTCGTCGGAAGCGGTTCAAGTGCAAGTCCTGTGGGTTTCAAGACCACTCGGATAGGAA
GGCAGCGGTGTGTGTGGCGCAAGAATGGGTTGCTGACCACGATGTAAATGTGCCGTCTCTCAAAACCCTTCCGCGAGTGTGGAAGGTGAGACGGACGGCA
TCGGGCCTGTGTGAAGGGGCCGACGCTCACGGAGCAGTTTTTGCTTCGGGTGTTACCGACATCGGAACGTCGGCGCAAGACTCACAGAGTCGAGCGCGAG
CGGAATTAAAGCCTGTTGCGTCCACGGCGGACTAGACACAGACGCCCCGTGTCACCCGACGCGGGGTACTTCAC
GATGCAGGACTAACCCAGACACTCTCCTTTGGACTCACCCTCCAAACAGGTAGTTCTGACAACTTGCACGAAGGCTGTCTCGAAGCCAGACGGGTCCGCA
ACGAAGTCAACCGACTCGACAAAGAAGGCTGGGACTGGAACGATATCCACGACACCGTTGTGGACAACTCCTACCACGTCAAAAACACCACGCAACTTCT
CGTCAAAAAAGCTCTCAAAGAGCTTGAGACGTACCACGACCACAAAGACGACGAGTGGGGCCGACCATACCCGTACATCCACGAAACGTATCCCCTACGG
ATGAACCACAACGAGGGCTACGCCCTCACCGTGGACGATTCAGGAGACATTCAGTTCCGAATCAGCTACAAACCGTACAACTACGTCAAAGGCGTGCTTC
GAGGCAGTCCAGACCACCTTGAACAAGTAAAAACTGCACTTCGCTCTGATGCGTGGCGAGTAGGTGTAGCTGAACTCGTGTACAAACACGACGAGTGGCG
ACTCCACGTCTCAGTCACGCATAAAAGCCGTACTGTAGCACCTCCAGACAATGCTGGCACGGTTGTTGGAGTGGACATTAACGAGGATTGCGTCGCACTC
GCCGCGATGAATCGAGACACAGGAGATGTGCTCGACTCGGTGGTCATCGAATACCCTGAGATCAAGCGCATTCGTCATGAGTTCTTCACGAAGCGCAAGC
GGATGCAAAAGGTCGGTCAAACAGCGTTCGAGAACGTTGTCCGCACAGAGGAACGGGACTTCGTTCACGACCACCTCCACAAAGTATCCCGTGACGTAAC
CAGATGGGTTTCCCAATTCAACGACCCGGTACTCGTCTTTGAAGACCTCAAAGACATGCGAGACTCACTCGATTACGGCACGCGGATGAACCGCCGCTTA
CACTCACTGCCGTTCGCGGCGCTCCGCGACACGGTGACGTACAAAACTGCATGGAACGGTGTTCCCTCAGATGACGTGAACCCCGAGTACACGTCCCAGC
GGTGCCCTCGCACGGAGTGTTTGCACACGGAGCGAGCGAATCGTCGTCGGAAGCGGTTCAAGTGCAAGTCCTGTGGGTTTCAAGACCACTCGGATAGGAA
GGCAGCGGTGTGTGTGGCGCAAGAATGGGTTGCTGACCACGATGTAAATGTGCCGTCTCTCAAAACCCTTCCGCGAGTGTGGAAGGTGAGACGGACGGCA
TCGGGCCTGTGTGAAGGGGCCGACGCTCACGGAGCAGTTTTTGCTTCGGGTGTTACCGACATCGGAACGTCGGCGCAAGACTCACAGAGTCGAGCGCGAG
CGGAATTAAAGCCTGTTGCGTCCACGGCGGACTAGACACAGACGCCCCGTGTCACCCGACGCGGGGTACTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1341 bp | 446 aa | 95 | 1435 | + | No |
AG : TnpB
ORF sequence :
MQDAGLTQTLSFGLTLQTGSSDNLHEGCLEARRVRNEVNRLDKEGWDWNDIHDTVVDNSYHVKNTTQLLVKKALKELETYHDHKDDEWGRPYPYIHETYP
LRMNHNEGYALTVDDSGDIQFRISYKPYNYVKGVLRGSPDHLEQVKTALRSDAWRVGVAELVYKHDEWRLHVSVTHKSRTVAPPDNAGTVVGVDINEDCV
ALAAMNRDTGDVLDSVVIEYPEIKRIRHEFFTKRKRMQKVGQTAFENVVRTEERDFVHDHLHKVSRDVTRWVSQFNDPVLVFEDLKDMRDSLDYGTRMNR
RLHSLPFAALRDTVTYKTAWNGVPSDDVNPEYTSQRCPRTECLHTERANRRRKRFKCKSCGFQDHSDRKAAVCVAQEWVADHDVNVPSLKTLPRVWKVRR
TASGLCEGADAHGAVFASGVTDIGTSAQDSQSRARAELKPVASTAD
LRMNHNEGYALTVDDSGDIQFRISYKPYNYVKGVLRGSPDHLEQVKTALRSDAWRVGVAELVYKHDEWRLHVSVTHKSRTVAPPDNAGTVVGVDINEDCV
ALAAMNRDTGDVLDSVVIEYPEIKRIRHEFFTKRKRMQKVGQTAFENVVRTEERDFVHDHLHKVSRDVTRWVSQFNDPVLVFEDLKDMRDSLDYGTRMNR
RLHSLPFAALRDTVTYKTAWNGVPSDDVNPEYTSQRCPRTECLHTERANRRRKRFKCKSCGFQDHSDRKAAVCVAQEWVADHDVNVPSLKTLPRVWKVRR
TASGLCEGADAHGAVFASGVTDIGTSAQDSQSRARAELKPVASTAD
Blast result :
Comments
ISNhu4 is 79% (TnpB) aa similar to ISNma13.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.