ISNhu4

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOIM01000037 ND Natrialba hulunbeirensis
Natrialba hulunbeirensis JCM 10989
DNA section
IS Length : 1474 bp

Ends


Left end : ACGCGGTCAAGGCAGAGTACCACGGGTCACCTGACCCGTGGGTGAATGCCGACAAATCGCCATCTTTACAACAATTAACGACAATTAAATTATTGTGCAA II struct. : Yes
Right end : GCAAGACTCACAGAGTCGAGCGCGAGCGGAATTAAAGCCTGTTGCGTCCACGGCGGACTAGACACAGACGCCCCGTGTCACCCGACGCGGGGTACTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGCGATTGCTGGTCTATGCGGGGCTGCCGtcac

DNA sequence

ACGCGGTCAAGGCAGAGTACCACGGGTCACCTGACCCGTGGGTGAATGCCGACAAATCGCCATCTTTACAACAATTAACGACAATTAAATTATTGTGCAA
GATGCAGGACTAACCCAGACACTCTCCTTTGGACTCACCCTCCAAACAGGTAGTTCTGACAACTTGCACGAAGGCTGTCTCGAAGCCAGACGGGTCCGCA
ACGAAGTCAACCGACTCGACAAAGAAGGCTGGGACTGGAACGATATCCACGACACCGTTGTGGACAACTCCTACCACGTCAAAAACACCACGCAACTTCT
CGTCAAAAAAGCTCTCAAAGAGCTTGAGACGTACCACGACCACAAAGACGACGAGTGGGGCCGACCATACCCGTACATCCACGAAACGTATCCCCTACGG
ATGAACCACAACGAGGGCTACGCCCTCACCGTGGACGATTCAGGAGACATTCAGTTCCGAATCAGCTACAAACCGTACAACTACGTCAAAGGCGTGCTTC
GAGGCAGTCCAGACCACCTTGAACAAGTAAAAACTGCACTTCGCTCTGATGCGTGGCGAGTAGGTGTAGCTGAACTCGTGTACAAACACGACGAGTGGCG
ACTCCACGTCTCAGTCACGCATAAAAGCCGTACTGTAGCACCTCCAGACAATGCTGGCACGGTTGTTGGAGTGGACATTAACGAGGATTGCGTCGCACTC
GCCGCGATGAATCGAGACACAGGAGATGTGCTCGACTCGGTGGTCATCGAATACCCTGAGATCAAGCGCATTCGTCATGAGTTCTTCACGAAGCGCAAGC
GGATGCAAAAGGTCGGTCAAACAGCGTTCGAGAACGTTGTCCGCACAGAGGAACGGGACTTCGTTCACGACCACCTCCACAAAGTATCCCGTGACGTAAC
CAGATGGGTTTCCCAATTCAACGACCCGGTACTCGTCTTTGAAGACCTCAAAGACATGCGAGACTCACTCGATTACGGCACGCGGATGAACCGCCGCTTA
CACTCACTGCCGTTCGCGGCGCTCCGCGACACGGTGACGTACAAAACTGCATGGAACGGTGTTCCCTCAGATGACGTGAACCCCGAGTACACGTCCCAGC
GGTGCCCTCGCACGGAGTGTTTGCACACGGAGCGAGCGAATCGTCGTCGGAAGCGGTTCAAGTGCAAGTCCTGTGGGTTTCAAGACCACTCGGATAGGAA
GGCAGCGGTGTGTGTGGCGCAAGAATGGGTTGCTGACCACGATGTAAATGTGCCGTCTCTCAAAACCCTTCCGCGAGTGTGGAAGGTGAGACGGACGGCA
TCGGGCCTGTGTGAAGGGGCCGACGCTCACGGAGCAGTTTTTGCTTCGGGTGTTACCGACATCGGAACGTCGGCGCAAGACTCACAGAGTCGAGCGCGAG
CGGAATTAAAGCCTGTTGCGTCCACGGCGGACTAGACACAGACGCCCCGTGTCACCCGACGCGGGGTACTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1341 bp446 aa951435+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MQDAGLTQTLSFGLTLQTGSSDNLHEGCLEARRVRNEVNRLDKEGWDWNDIHDTVVDNSYHVKNTTQLLVKKALKELETYHDHKDDEWGRPYPYIHETYP
LRMNHNEGYALTVDDSGDIQFRISYKPYNYVKGVLRGSPDHLEQVKTALRSDAWRVGVAELVYKHDEWRLHVSVTHKSRTVAPPDNAGTVVGVDINEDCV
ALAAMNRDTGDVLDSVVIEYPEIKRIRHEFFTKRKRMQKVGQTAFENVVRTEERDFVHDHLHKVSRDVTRWVSQFNDPVLVFEDLKDMRDSLDYGTRMNR
RLHSLPFAALRDTVTYKTAWNGVPSDDVNPEYTSQRCPRTECLHTERANRRRKRFKCKSCGFQDHSDRKAAVCVAQEWVADHDVNVPSLKTLPRVWKVRR
TASGLCEGADAHGAVFASGVTDIGTSAQDSQSRARAELKPVASTAD

 

Blast result :
Comments
ISNhu4 is 79% (TnpB) aa similar to ISNma13.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.