ISNhu3

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOIM01000031 ND Natrialba hulunbeirensis
Natrialba hulunbeirensis JCM 10989
DNA section
IS Length : 1473 bp

Ends


Left end : AAAGAATAGCAGCGCGAGTACCACGGGCCACCGTGCCGTGGGTGAAGCGCGTCACAACACGAACTTTTAACAAGTTTCAAACCATACTAGAATCCAGTGC II struct. : Yes
Right end : GCAACCAGGGATGGGAGCGCGAGAGGAATTAAAGTCCGTTGCGTCAGCAGTGCAGGACTAAACATGGACGCCCCACGCCACCGTGCGCGGGGTACTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CCCGACTGAACATCTATGGGGCGCTCTTCtcac

DNA sequence

AAAGAATAGCAGCGCGAGTACCACGGGCCACCGTGCCGTGGGTGAAGCGCGTCACAACACGAACTTTTAACAAGTTTCAAACCATACTAGAATCCAGTGC
AGTCGTCCAAACTCACCCAATCACTGTCGTTTGGACTAGACATCCACACGGGGAGTGGAGACGATCTGCAAACCGGCTGTCTTGAGGCCCGCCGCATCCG
CAACGAAACCAACCGCCTCGACCGCCAAGGTTGGAATTGGAACGAGATTAAATCGGTCGTCGTGGATAACGCCGACCATGTCAACAACACCACCCAACTC
ATCGTTGATAAGGCACTCGGTGAAATCGAAACGTATCACGACAACAAAGATGATGGGTGGGGGCGACCCCACCCATACATCGACGAGTCGTACCCGATGG
TGATGAACCACGGAGAAGGCTACCGCCTGTTCCCTGAAGAGGATGGGACTGTTCGATTCCGTATCACTGCCACAAGAGGCACCCACGTCAAAGGCGACCT
TCGAGGGAGCCCTGATCACTTCGACCGACTCCAAACTGCATTCAACGACAAAGAGTGGCGGGTTGGAACTGCTGAGGTCGTACACAAGCACAACGAGTGG
CGACTCCACGTCACAGTCACACACGAAACTCACAGAGTCGCCAGCAAACACAATGCAGACACAATTGTTGGTTTGGATGTGAACGAGGACTGCATCGCCC
TCGCAGCGATGAGTCGGAGCGGTGCAGTGAAAGACTCTGTGGTGTTCGAGTATCCATCTGTGAAAGAGCAACGCCACGAGTTTTTCACCAAACGCAAGCG
GATGCAGAAAGCCGGGCAGACTGCGTTTGAAACGGTCGTGAAGACTGAAGAACGCGACTACGTTCACGATCGCTTGCACAAAGTATCGCGGGAAGTAGCT
GAATGGATCTCGCAATTTACCGACCCTGTGATCGTCTTTGAAGACCTCAAAGACATGCGAGAGTCCATCGACTACGGAACGCGAATGAACCGTCGGCTAC
ACTCACTGCCGTTCGCAGCTCTCCAAGAGATGGTATCGTACAAAGCTGCGTGGGAAGGGGTTCCTTCAGATGTGGTTGACCCCGAATACACGAGTCAGCG
ATGCCCACGGACGGAGTGCCAGCACACAGACCGAGCGAATCGACAGAAGAAGCGATTCAAATGCAAACGGTGTGGGTTCCAAGACCACGCTGATCGGAAG
GCTGCGGTATGCGTTGTGCAGAATTGGTTAGACGAACAGTATGGAAATGTGCCGTCTCTCGAAACCCTTCCACACGTTCGGACGGTGAGACGGGCGGCAT
CGGGGGCTGGTGGAGGCCCCGACTCTCACGGACACGATTTGTGTTCGGGTGTTGACCGACACGGGACGTCGGTGCAACCAGGGATGGGAGCGCGAGAGGA
ATTAAAGTCCGTTGCGTCAGCAGTGCAGGACTAAACATGGACGCCCCACGCCACCGTGCGCGGGGTACTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa971434+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MQSSKLTQSLSFGLDIHTGSGDDLQTGCLEARRIRNETNRLDRQGWNWNEIKSVVVDNADHVNNTTQLIVDKALGEIETYHDNKDDGWGRPHPYIDESYP
MVMNHGEGYRLFPEEDGTVRFRITATRGTHVKGDLRGSPDHFDRLQTAFNDKEWRVGTAEVVHKHNEWRLHVTVTHETHRVASKHNADTIVGLDVNEDCI
ALAAMSRSGAVKDSVVFEYPSVKEQRHEFFTKRKRMQKAGQTAFETVVKTEERDYVHDRLHKVSREVAEWISQFTDPVIVFEDLKDMRESIDYGTRMNRR
LHSLPFAALQEMVSYKAAWEGVPSDVVDPEYTSQRCPRTECQHTDRANRQKKRFKCKRCGFQDHADRKAAVCVVQNWLDEQYGNVPSLETLPHVRTVRRA
ASGAGGGPDSHGHDLCSGVDRHGTSVQPGMGAREELKSVASAVQD

 

Blast result :
Comments
ISNhu3 is 96% (TnpB) aa similar to ISNma15.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.