ISNhu3
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOIM01000031 | ND | Natrialba hulunbeirensis | Natrialba hulunbeirensis JCM 10989 |
DNA section
IS Length : 1473 bp
Ends
Left end : AAAGAATAGCAGCGCGAGTACCACGGGCCACCGTGCCGTGGGTGAAGCGCGTCACAACACGAACTTTTAACAAGTTTCAAACCATACTAGAATCCAGTGC II struct. : Yes
Right end : GCAACCAGGGATGGGAGCGCGAGAGGAATTAAAGTCCGTTGCGTCAGCAGTGCAGGACTAAACATGGACGCCCCACGCCACCGTGCGCGGGGTACTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCCGACTGAACA | TCTAT | GGGGCGCTCTTC | tcac |
DNA sequence
AAAGAATAGCAGCGCGAGTACCACGGGCCACCGTGCCGTGGGTGAAGCGCGTCACAACACGAACTTTTAACAAGTTTCAAACCATACTAGAATCCAGTGC
AGTCGTCCAAACTCACCCAATCACTGTCGTTTGGACTAGACATCCACACGGGGAGTGGAGACGATCTGCAAACCGGCTGTCTTGAGGCCCGCCGCATCCG
CAACGAAACCAACCGCCTCGACCGCCAAGGTTGGAATTGGAACGAGATTAAATCGGTCGTCGTGGATAACGCCGACCATGTCAACAACACCACCCAACTC
ATCGTTGATAAGGCACTCGGTGAAATCGAAACGTATCACGACAACAAAGATGATGGGTGGGGGCGACCCCACCCATACATCGACGAGTCGTACCCGATGG
TGATGAACCACGGAGAAGGCTACCGCCTGTTCCCTGAAGAGGATGGGACTGTTCGATTCCGTATCACTGCCACAAGAGGCACCCACGTCAAAGGCGACCT
TCGAGGGAGCCCTGATCACTTCGACCGACTCCAAACTGCATTCAACGACAAAGAGTGGCGGGTTGGAACTGCTGAGGTCGTACACAAGCACAACGAGTGG
CGACTCCACGTCACAGTCACACACGAAACTCACAGAGTCGCCAGCAAACACAATGCAGACACAATTGTTGGTTTGGATGTGAACGAGGACTGCATCGCCC
TCGCAGCGATGAGTCGGAGCGGTGCAGTGAAAGACTCTGTGGTGTTCGAGTATCCATCTGTGAAAGAGCAACGCCACGAGTTTTTCACCAAACGCAAGCG
GATGCAGAAAGCCGGGCAGACTGCGTTTGAAACGGTCGTGAAGACTGAAGAACGCGACTACGTTCACGATCGCTTGCACAAAGTATCGCGGGAAGTAGCT
GAATGGATCTCGCAATTTACCGACCCTGTGATCGTCTTTGAAGACCTCAAAGACATGCGAGAGTCCATCGACTACGGAACGCGAATGAACCGTCGGCTAC
ACTCACTGCCGTTCGCAGCTCTCCAAGAGATGGTATCGTACAAAGCTGCGTGGGAAGGGGTTCCTTCAGATGTGGTTGACCCCGAATACACGAGTCAGCG
ATGCCCACGGACGGAGTGCCAGCACACAGACCGAGCGAATCGACAGAAGAAGCGATTCAAATGCAAACGGTGTGGGTTCCAAGACCACGCTGATCGGAAG
GCTGCGGTATGCGTTGTGCAGAATTGGTTAGACGAACAGTATGGAAATGTGCCGTCTCTCGAAACCCTTCCACACGTTCGGACGGTGAGACGGGCGGCAT
CGGGGGCTGGTGGAGGCCCCGACTCTCACGGACACGATTTGTGTTCGGGTGTTGACCGACACGGGACGTCGGTGCAACCAGGGATGGGAGCGCGAGAGGA
ATTAAAGTCCGTTGCGTCAGCAGTGCAGGACTAAACATGGACGCCCCACGCCACCGTGCGCGGGGTACTTCAC
AGTCGTCCAAACTCACCCAATCACTGTCGTTTGGACTAGACATCCACACGGGGAGTGGAGACGATCTGCAAACCGGCTGTCTTGAGGCCCGCCGCATCCG
CAACGAAACCAACCGCCTCGACCGCCAAGGTTGGAATTGGAACGAGATTAAATCGGTCGTCGTGGATAACGCCGACCATGTCAACAACACCACCCAACTC
ATCGTTGATAAGGCACTCGGTGAAATCGAAACGTATCACGACAACAAAGATGATGGGTGGGGGCGACCCCACCCATACATCGACGAGTCGTACCCGATGG
TGATGAACCACGGAGAAGGCTACCGCCTGTTCCCTGAAGAGGATGGGACTGTTCGATTCCGTATCACTGCCACAAGAGGCACCCACGTCAAAGGCGACCT
TCGAGGGAGCCCTGATCACTTCGACCGACTCCAAACTGCATTCAACGACAAAGAGTGGCGGGTTGGAACTGCTGAGGTCGTACACAAGCACAACGAGTGG
CGACTCCACGTCACAGTCACACACGAAACTCACAGAGTCGCCAGCAAACACAATGCAGACACAATTGTTGGTTTGGATGTGAACGAGGACTGCATCGCCC
TCGCAGCGATGAGTCGGAGCGGTGCAGTGAAAGACTCTGTGGTGTTCGAGTATCCATCTGTGAAAGAGCAACGCCACGAGTTTTTCACCAAACGCAAGCG
GATGCAGAAAGCCGGGCAGACTGCGTTTGAAACGGTCGTGAAGACTGAAGAACGCGACTACGTTCACGATCGCTTGCACAAAGTATCGCGGGAAGTAGCT
GAATGGATCTCGCAATTTACCGACCCTGTGATCGTCTTTGAAGACCTCAAAGACATGCGAGAGTCCATCGACTACGGAACGCGAATGAACCGTCGGCTAC
ACTCACTGCCGTTCGCAGCTCTCCAAGAGATGGTATCGTACAAAGCTGCGTGGGAAGGGGTTCCTTCAGATGTGGTTGACCCCGAATACACGAGTCAGCG
ATGCCCACGGACGGAGTGCCAGCACACAGACCGAGCGAATCGACAGAAGAAGCGATTCAAATGCAAACGGTGTGGGTTCCAAGACCACGCTGATCGGAAG
GCTGCGGTATGCGTTGTGCAGAATTGGTTAGACGAACAGTATGGAAATGTGCCGTCTCTCGAAACCCTTCCACACGTTCGGACGGTGAGACGGGCGGCAT
CGGGGGCTGGTGGAGGCCCCGACTCTCACGGACACGATTTGTGTTCGGGTGTTGACCGACACGGGACGTCGGTGCAACCAGGGATGGGAGCGCGAGAGGA
ATTAAAGTCCGTTGCGTCAGCAGTGCAGGACTAAACATGGACGCCCCACGCCACCGTGCGCGGGGTACTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 97 | 1434 | + | No |
AG : TnpB
ORF sequence :
MQSSKLTQSLSFGLDIHTGSGDDLQTGCLEARRIRNETNRLDRQGWNWNEIKSVVVDNADHVNNTTQLIVDKALGEIETYHDNKDDGWGRPHPYIDESYP
MVMNHGEGYRLFPEEDGTVRFRITATRGTHVKGDLRGSPDHFDRLQTAFNDKEWRVGTAEVVHKHNEWRLHVTVTHETHRVASKHNADTIVGLDVNEDCI
ALAAMSRSGAVKDSVVFEYPSVKEQRHEFFTKRKRMQKAGQTAFETVVKTEERDYVHDRLHKVSREVAEWISQFTDPVIVFEDLKDMRESIDYGTRMNRR
LHSLPFAALQEMVSYKAAWEGVPSDVVDPEYTSQRCPRTECQHTDRANRQKKRFKCKRCGFQDHADRKAAVCVVQNWLDEQYGNVPSLETLPHVRTVRRA
ASGAGGGPDSHGHDLCSGVDRHGTSVQPGMGAREELKSVASAVQD
MVMNHGEGYRLFPEEDGTVRFRITATRGTHVKGDLRGSPDHFDRLQTAFNDKEWRVGTAEVVHKHNEWRLHVTVTHETHRVASKHNADTIVGLDVNEDCI
ALAAMSRSGAVKDSVVFEYPSVKEQRHEFFTKRKRMQKAGQTAFETVVKTEERDYVHDRLHKVSREVAEWISQFTDPVIVFEDLKDMRESIDYGTRMNRR
LHSLPFAALQEMVSYKAAWEGVPSDVVDPEYTSQRCPRTECQHTDRANRQKKRFKCKRCGFQDHADRKAAVCVVQNWLDEQYGNVPSLETLPHVRTVRRA
ASGAGGGPDSHGHDLCSGVDRHGTSVQPGMGAREELKSVASAVQD
Blast result :
Comments
ISNhu3 is 96% (TnpB) aa similar to ISNma15.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.