ISHaru3

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BBJO01000022 ND Halobellus rufus
Halobellus rufus CBA1103
DNA section
IS Length : 1478 bp

Ends


Left end : CGTTTTCGAGGTGGAGCCTCCGGCCTCAAGGAGCGACCGAAGCGTAGCGAAGGGAGTGAGTAGGCCGGAGAGGAAACCGACATGGTACGGCACAACCGGC II struct. : Yes
Right end : CGGCCTATTGCTGGTGACTGATTGCCGGGAGTCCACATCAAAGCCCCACCTTCAAGGACCGAGGCGCGTATGCGCCGAGGGAGCAGGTGGGGTAGTTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GAGCGATAAAATTCAGAGGCTGATGATAttac

DNA sequence

CGTTTTCGAGGTGGAGCCTCCGGCCTCAAGGAGCGACCGAAGCGTAGCGAAGGGAGTGAGTAGGCCGGAGAGGAAACCGACATGGTACGGCACAACCGGC
ACACTGCGACCGACTGACCCCTGAACGTATAAGTACCGTCAGATACTCTCTGAAGTCATGGACGTGCGTCGAACTGCCGTCGTGAAACTCGACCTTTCCG
ACGAGCAACGCGACGTACTCCACCGAACTGCCGAGCAATACCTGTACTGCGCGAACCGAACCGCTGACTACTGTTGGTCCGACACCTCCTACACCGAGTG
CAGAATCAACAAGAGACAGGTTCGTGACGCACTCTACGCCACTCTCCGCAAGGAGACAGAACTACAGGCACAACTCGTCCAAGCCGCCATCAAACGCGCC
ATCGAAGCCGTCAAAGCGTGTGTCGAACGCTGGAAGAAGGGGCAGCGCGTCTCTTGCCCGACGTTCACCGCCGAAACGATGGACTACGACAGGCGAAGCG
CGACCTTCTACCGGAACAAGGTGTCGCTGGCAACTGTTGAGGGCCGAGTCGAACCGTCGTTCGTTCTTCCGGCAGACAGTCCGACACCCTACGAGCGGTA
CGTACTCTCCGAGAACTACGAGTTCCGCGAGAGTACGGTTCGATACGATGCGGTGGACGGCGAGTTCTATATCCAAATCTCAACTCGGCGGATAGACGGT
GACGCAGAGGTTCCGGCAGATACCGGGCACCAAACAGTCCTCGGTATCGACCTCGGAGTCAACAGTCTTGCTGTCTCCTCGACCGGTACGTTCTGGCAGG
GAGACGACTACGACCACTGGTGCCGTGAGTTTGAGAAGCGGCGTGGTGAGATACAACAGCGCGGCACACAATCCGCGCACAACGCCTTGCTCCGCCTCGG
GAAGCGCGAAGAAGCATGGCGCAAACAGTACATCCACACCGTCGCTAACGAACTTGTCGCGGAAGCTGTTGAGAACGACTGCGACGTGATCGTGTTCGAG
GAGTTGACCGACATTCGGGAGCGACTTCCGCAGGCGAAGTGGCACCACGTTTGGGCGTTCCGATGCCTCTACGAGTATGTCTCCTACAAAGCGCCCGAAC
AGGGCGTCTCCGTGGATCAAGTCGAGCCGAACTACACGTCCCAACGCTGTTCTCGGACGGACTGTGGGTTCACGCACGAAGACAACCGCCACGGAGAACA
CTTCTGTTGCCAGAAATGTGGATACGAGGTGAACGCGGACTACAACGGTGCGAAGAATATCGGGCTACGGTACGGACGGAAGCGGACACACAGACTCCGT
TCCTCGCCCAAGTCGGGGAGCGGAGACGCAGAAGTAGACCTGCGTGTGAATGGTGGGACGTTGAACGGCGAGAGTCACCGGCCTATTGCTGGTGACTGAT
TGCCGGGAGTCCACATCAAAGCCCCACCTTCAAGGACCGAGGCGCGTATGCGCCGAGGGAGCAGGTGGGGTAGTTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1242 bp413 aa1581399+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MDVRRTAVVKLDLSDEQRDVLHRTAEQYLYCANRTADYCWSDTSYTECRINKRQVRDALYATLRKETELQAQLVQAAIKRAIEAVKACVERWKKGQRVSC
PTFTAETMDYDRRSATFYRNKVSLATVEGRVEPSFVLPADSPTPYERYVLSENYEFRESTVRYDAVDGEFYIQISTRRIDGDAEVPADTGHQTVLGIDLG
VNSLAVSSTGTFWQGDDYDHWCREFEKRRGEIQQRGTQSAHNALLRLGKREEAWRKQYIHTVANELVAEAVENDCDVIVFEELTDIRERLPQAKWHHVWA
FRCLYEYVSYKAPEQGVSVDQVEPNYTSQRCSRTDCGFTHEDNRHGEHFCCQKCGYEVNADYNGAKNIGLRYGRKRTHRLRSSPKSGSGDAEVDLRVNGG
TLNGESHRPIAGD

 

Blast result :
Comments
ISHaru3 is 92% (TnpB) aa similar to ISHwa28.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Roh,S.W. and Nam,Y.-D.(2014) Direct submission GenBank.