ISHaru3
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
BBJO01000022 | ND | Halobellus rufus | Halobellus rufus CBA1103 |
DNA section
IS Length : 1478 bp
Ends
Left end : CGTTTTCGAGGTGGAGCCTCCGGCCTCAAGGAGCGACCGAAGCGTAGCGAAGGGAGTGAGTAGGCCGGAGAGGAAACCGACATGGTACGGCACAACCGGC II struct. : Yes
Right end : CGGCCTATTGCTGGTGACTGATTGCCGGGAGTCCACATCAAAGCCCCACCTTCAAGGACCGAGGCGCGTATGCGCCGAGGGAGCAGGTGGGGTAGTTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GAGCGATAAAAT | TCAG | AGGCTGATGATA | ttac |
DNA sequence
CGTTTTCGAGGTGGAGCCTCCGGCCTCAAGGAGCGACCGAAGCGTAGCGAAGGGAGTGAGTAGGCCGGAGAGGAAACCGACATGGTACGGCACAACCGGC
ACACTGCGACCGACTGACCCCTGAACGTATAAGTACCGTCAGATACTCTCTGAAGTCATGGACGTGCGTCGAACTGCCGTCGTGAAACTCGACCTTTCCG
ACGAGCAACGCGACGTACTCCACCGAACTGCCGAGCAATACCTGTACTGCGCGAACCGAACCGCTGACTACTGTTGGTCCGACACCTCCTACACCGAGTG
CAGAATCAACAAGAGACAGGTTCGTGACGCACTCTACGCCACTCTCCGCAAGGAGACAGAACTACAGGCACAACTCGTCCAAGCCGCCATCAAACGCGCC
ATCGAAGCCGTCAAAGCGTGTGTCGAACGCTGGAAGAAGGGGCAGCGCGTCTCTTGCCCGACGTTCACCGCCGAAACGATGGACTACGACAGGCGAAGCG
CGACCTTCTACCGGAACAAGGTGTCGCTGGCAACTGTTGAGGGCCGAGTCGAACCGTCGTTCGTTCTTCCGGCAGACAGTCCGACACCCTACGAGCGGTA
CGTACTCTCCGAGAACTACGAGTTCCGCGAGAGTACGGTTCGATACGATGCGGTGGACGGCGAGTTCTATATCCAAATCTCAACTCGGCGGATAGACGGT
GACGCAGAGGTTCCGGCAGATACCGGGCACCAAACAGTCCTCGGTATCGACCTCGGAGTCAACAGTCTTGCTGTCTCCTCGACCGGTACGTTCTGGCAGG
GAGACGACTACGACCACTGGTGCCGTGAGTTTGAGAAGCGGCGTGGTGAGATACAACAGCGCGGCACACAATCCGCGCACAACGCCTTGCTCCGCCTCGG
GAAGCGCGAAGAAGCATGGCGCAAACAGTACATCCACACCGTCGCTAACGAACTTGTCGCGGAAGCTGTTGAGAACGACTGCGACGTGATCGTGTTCGAG
GAGTTGACCGACATTCGGGAGCGACTTCCGCAGGCGAAGTGGCACCACGTTTGGGCGTTCCGATGCCTCTACGAGTATGTCTCCTACAAAGCGCCCGAAC
AGGGCGTCTCCGTGGATCAAGTCGAGCCGAACTACACGTCCCAACGCTGTTCTCGGACGGACTGTGGGTTCACGCACGAAGACAACCGCCACGGAGAACA
CTTCTGTTGCCAGAAATGTGGATACGAGGTGAACGCGGACTACAACGGTGCGAAGAATATCGGGCTACGGTACGGACGGAAGCGGACACACAGACTCCGT
TCCTCGCCCAAGTCGGGGAGCGGAGACGCAGAAGTAGACCTGCGTGTGAATGGTGGGACGTTGAACGGCGAGAGTCACCGGCCTATTGCTGGTGACTGAT
TGCCGGGAGTCCACATCAAAGCCCCACCTTCAAGGACCGAGGCGCGTATGCGCCGAGGGAGCAGGTGGGGTAGTTTAC
ACACTGCGACCGACTGACCCCTGAACGTATAAGTACCGTCAGATACTCTCTGAAGTCATGGACGTGCGTCGAACTGCCGTCGTGAAACTCGACCTTTCCG
ACGAGCAACGCGACGTACTCCACCGAACTGCCGAGCAATACCTGTACTGCGCGAACCGAACCGCTGACTACTGTTGGTCCGACACCTCCTACACCGAGTG
CAGAATCAACAAGAGACAGGTTCGTGACGCACTCTACGCCACTCTCCGCAAGGAGACAGAACTACAGGCACAACTCGTCCAAGCCGCCATCAAACGCGCC
ATCGAAGCCGTCAAAGCGTGTGTCGAACGCTGGAAGAAGGGGCAGCGCGTCTCTTGCCCGACGTTCACCGCCGAAACGATGGACTACGACAGGCGAAGCG
CGACCTTCTACCGGAACAAGGTGTCGCTGGCAACTGTTGAGGGCCGAGTCGAACCGTCGTTCGTTCTTCCGGCAGACAGTCCGACACCCTACGAGCGGTA
CGTACTCTCCGAGAACTACGAGTTCCGCGAGAGTACGGTTCGATACGATGCGGTGGACGGCGAGTTCTATATCCAAATCTCAACTCGGCGGATAGACGGT
GACGCAGAGGTTCCGGCAGATACCGGGCACCAAACAGTCCTCGGTATCGACCTCGGAGTCAACAGTCTTGCTGTCTCCTCGACCGGTACGTTCTGGCAGG
GAGACGACTACGACCACTGGTGCCGTGAGTTTGAGAAGCGGCGTGGTGAGATACAACAGCGCGGCACACAATCCGCGCACAACGCCTTGCTCCGCCTCGG
GAAGCGCGAAGAAGCATGGCGCAAACAGTACATCCACACCGTCGCTAACGAACTTGTCGCGGAAGCTGTTGAGAACGACTGCGACGTGATCGTGTTCGAG
GAGTTGACCGACATTCGGGAGCGACTTCCGCAGGCGAAGTGGCACCACGTTTGGGCGTTCCGATGCCTCTACGAGTATGTCTCCTACAAAGCGCCCGAAC
AGGGCGTCTCCGTGGATCAAGTCGAGCCGAACTACACGTCCCAACGCTGTTCTCGGACGGACTGTGGGTTCACGCACGAAGACAACCGCCACGGAGAACA
CTTCTGTTGCCAGAAATGTGGATACGAGGTGAACGCGGACTACAACGGTGCGAAGAATATCGGGCTACGGTACGGACGGAAGCGGACACACAGACTCCGT
TCCTCGCCCAAGTCGGGGAGCGGAGACGCAGAAGTAGACCTGCGTGTGAATGGTGGGACGTTGAACGGCGAGAGTCACCGGCCTATTGCTGGTGACTGAT
TGCCGGGAGTCCACATCAAAGCCCCACCTTCAAGGACCGAGGCGCGTATGCGCCGAGGGAGCAGGTGGGGTAGTTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 158 | 1399 | + | No |
AG : TnpB
ORF sequence :
MDVRRTAVVKLDLSDEQRDVLHRTAEQYLYCANRTADYCWSDTSYTECRINKRQVRDALYATLRKETELQAQLVQAAIKRAIEAVKACVERWKKGQRVSC
PTFTAETMDYDRRSATFYRNKVSLATVEGRVEPSFVLPADSPTPYERYVLSENYEFRESTVRYDAVDGEFYIQISTRRIDGDAEVPADTGHQTVLGIDLG
VNSLAVSSTGTFWQGDDYDHWCREFEKRRGEIQQRGTQSAHNALLRLGKREEAWRKQYIHTVANELVAEAVENDCDVIVFEELTDIRERLPQAKWHHVWA
FRCLYEYVSYKAPEQGVSVDQVEPNYTSQRCSRTDCGFTHEDNRHGEHFCCQKCGYEVNADYNGAKNIGLRYGRKRTHRLRSSPKSGSGDAEVDLRVNGG
TLNGESHRPIAGD
PTFTAETMDYDRRSATFYRNKVSLATVEGRVEPSFVLPADSPTPYERYVLSENYEFRESTVRYDAVDGEFYIQISTRRIDGDAEVPADTGHQTVLGIDLG
VNSLAVSSTGTFWQGDDYDHWCREFEKRRGEIQQRGTQSAHNALLRLGKREEAWRKQYIHTVANELVAEAVENDCDVIVFEELTDIRERLPQAKWHHVWA
FRCLYEYVSYKAPEQGVSVDQVEPNYTSQRCSRTDCGFTHEDNRHGEHFCCQKCGYEVNADYNGAKNIGLRYGRKRTHRLRSSPKSGSGDAEVDLRVNGG
TLNGESHRPIAGD
Blast result :
Comments
ISHaru3 is 92% (TnpB) aa similar to ISHwa28.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Roh,S.W. and Nam,Y.-D.(2014) Direct submission GenBank.
2] Roh,S.W. and Nam,Y.-D.(2014) Direct submission GenBank.