ISHaru2

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BBJO01000004 ND Halobellus rufus
Halobellus rufus CBA1103
DNA section
IS Length : 1536 bp

Ends


Left end : ACGAAATCAAGGAGAATACCTGACCCTTCAGGGTCAGGATGAATCCGATAACTCCTCCACAAACCACCGTCGATGGAGGGGCTGGATATTCTACGTTCTC II struct. : Yes
Right end : CCAACCGCAGGTTCAAGTGGTAGACTGCAAACCGTAATATCCCAATCCAGCGGCGCGGTGCCGTGGGATTCCTCCGCATTCAGGCGGAGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGGCAACATCAATTATTCCGGAACTTTTtcaa

DNA sequence

ACGAAATCAAGGAGAATACCTGACCCTTCAGGGTCAGGATGAATCCGATAACTCCTCCACAAACCACCGTCGATGGAGGGGCTGGATATTCTACGTTCTC
AATACGAACCTTTACAATAAATACGTGTATAACTGATTATACAGACGTTCAGAATGCTGGAAGTCCATCGCACCCACCAAGCCAAAATCCTCAACCACCG
ACAGGTAGAGGAGATGCTCGACCGCCACGGGTGGTCGGCCAGCAAACTCTGGAACGTCGCCAACTACCACTCCCGCCAAGTCTGGGACGAAACCAGCGAG
ATCCCCGACCACGGCGACCTCAAAGACGAGTTGAAGACACATCCAATATACAAGGGACTGCATTCACAGTCCAGTCAGCGCGTTCTGGAGGAACTCGCTG
AGGCCTTCAACTCATGGTACGGTAAGAAACAGTCCGATAATCGAGCGAACCCACCCGGCTACCGCAAGAAAAACTACTACGACACCCAAGGACGCCGCGT
CCACGAAGAACACCCGCGTTCTACCGTGACGTGGAAGCGGAACGGCATCAAACACGACTCGAAGAACAACCGGGTTCGGCTCTCAAAAGGCGCGAATCAC
AAGGAACACCCGAAAGCATGGGAATACATCCTTGTCGAATACGAAACCCGTCCCGGCGTCGTGGTTGAGAACCTGCAACAGGTTCGCGCCGTCTACGACA
AGGCGAAGGGACGCTGGGAACTCCACCTCGTCTGCAAAGACGAAATCGGAACTCCTGACGCTCCCGGCACCGAGTCAGCTGGTGTTGACCTCGGCATTTG
TAACTTCGCGGCAGTTGCGTACAGTACCGAGGACGCCGACCTGTACCCCGGCAATCGTCTGAAACAAGACGGGTACTACTTCCCGAAAGAGATCGCCAAG
TGCGATGACTCGAGTGGCGACAGAGCGACCCGTCTTCACAACAAGTGGTCGGAGCGCCGCACGCACTTCTTCCACAGTCTCGCCAAACACATCGTCCAGC
GGTGTGTCGAGAAAGATGTTGGCCGCATCAACGTCGGGGACTTAGAAGGAGTCCGTGAAGACGGAAATGGTGAGTCGAAAAACTGGGGCACGCACAGCAA
CCTCGACCTGCACGGGTGGGCGTTCGACCGCTTTACCAACATTCTCGAATACAAGGCGAAAGTCGAAGGGATTGATGTCGTAGACGTGTCCGAGCGCGAC
ACGAGCAAGACATGTTGCGTGTGTGGTAAGGAAGACGAGAATCAGCGTGTTGAACGGGGGTTGTACGTCTGTGAGACGTGTGATGCAGCGTTCAACGCTG
ATGTGAACGGGGCGGAGAATATCCGTCTCGACATAAACGAAAGTAACTCCGAGTCTTCGACCAGTTTGGACGAAGATAGGAGTACCGGCTGGTTGGCACA
GCCCGGAGTCTACCTGTATGACTTGTCCAGCGGATTCCAACCGCAGGTTCAAGTGGTAGACTGCAAACCGTAATATCCCAATCCAGCGGCGCGGTGCCGT
GGGATTCCTCCGCATTCAGGCGGAGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1320 bp439 aa1541473+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLEVHRTHQAKILNHRQVEEMLDRHGWSASKLWNVANYHSRQVWDETSEIPDHGDLKDELKTHPIYKGLHSQSSQRVLEELAEAFNSWYGKKQSDNRANP
PGYRKKNYYDTQGRRVHEEHPRSTVTWKRNGIKHDSKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVVVENLQQVRAVYDKAKGRWELHLVCKDEIGT
PDAPGTESAGVDLGICNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIAKCDDSSGDRATRLHNKWSERRTHFFHSLAKHIVQRCVEKDVGRINVGDLEGV
REDGNGESKNWGTHSNLDLHGWAFDRFTNILEYKAKVEGIDVVDVSERDTSKTCCVCGKEDENQRVERGLYVCETCDAAFNADVNGAENIRLDINESNSE
SSTSLDEDRSTGWLAQPGVYLYDLSSGFQPQVQVVDCKP

 

Blast result :
Comments
ISHaru2 is 93% (TnpB) aa similar to ISHbo10.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Roh,S.W. and Nam,Y.-D.(2014) Direct submission GenBank.