ISHaru2
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
BBJO01000004 | ND | Halobellus rufus | Halobellus rufus CBA1103 |
DNA section
IS Length : 1536 bp
Ends
Left end : ACGAAATCAAGGAGAATACCTGACCCTTCAGGGTCAGGATGAATCCGATAACTCCTCCACAAACCACCGTCGATGGAGGGGCTGGATATTCTACGTTCTC II struct. : Yes
Right end : CCAACCGCAGGTTCAAGTGGTAGACTGCAAACCGTAATATCCCAATCCAGCGGCGCGGTGCCGTGGGATTCCTCCGCATTCAGGCGGAGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGGCAACATCAA | TTAT | TCCGGAACTTTT | tcaa |
DNA sequence
ACGAAATCAAGGAGAATACCTGACCCTTCAGGGTCAGGATGAATCCGATAACTCCTCCACAAACCACCGTCGATGGAGGGGCTGGATATTCTACGTTCTC
AATACGAACCTTTACAATAAATACGTGTATAACTGATTATACAGACGTTCAGAATGCTGGAAGTCCATCGCACCCACCAAGCCAAAATCCTCAACCACCG
ACAGGTAGAGGAGATGCTCGACCGCCACGGGTGGTCGGCCAGCAAACTCTGGAACGTCGCCAACTACCACTCCCGCCAAGTCTGGGACGAAACCAGCGAG
ATCCCCGACCACGGCGACCTCAAAGACGAGTTGAAGACACATCCAATATACAAGGGACTGCATTCACAGTCCAGTCAGCGCGTTCTGGAGGAACTCGCTG
AGGCCTTCAACTCATGGTACGGTAAGAAACAGTCCGATAATCGAGCGAACCCACCCGGCTACCGCAAGAAAAACTACTACGACACCCAAGGACGCCGCGT
CCACGAAGAACACCCGCGTTCTACCGTGACGTGGAAGCGGAACGGCATCAAACACGACTCGAAGAACAACCGGGTTCGGCTCTCAAAAGGCGCGAATCAC
AAGGAACACCCGAAAGCATGGGAATACATCCTTGTCGAATACGAAACCCGTCCCGGCGTCGTGGTTGAGAACCTGCAACAGGTTCGCGCCGTCTACGACA
AGGCGAAGGGACGCTGGGAACTCCACCTCGTCTGCAAAGACGAAATCGGAACTCCTGACGCTCCCGGCACCGAGTCAGCTGGTGTTGACCTCGGCATTTG
TAACTTCGCGGCAGTTGCGTACAGTACCGAGGACGCCGACCTGTACCCCGGCAATCGTCTGAAACAAGACGGGTACTACTTCCCGAAAGAGATCGCCAAG
TGCGATGACTCGAGTGGCGACAGAGCGACCCGTCTTCACAACAAGTGGTCGGAGCGCCGCACGCACTTCTTCCACAGTCTCGCCAAACACATCGTCCAGC
GGTGTGTCGAGAAAGATGTTGGCCGCATCAACGTCGGGGACTTAGAAGGAGTCCGTGAAGACGGAAATGGTGAGTCGAAAAACTGGGGCACGCACAGCAA
CCTCGACCTGCACGGGTGGGCGTTCGACCGCTTTACCAACATTCTCGAATACAAGGCGAAAGTCGAAGGGATTGATGTCGTAGACGTGTCCGAGCGCGAC
ACGAGCAAGACATGTTGCGTGTGTGGTAAGGAAGACGAGAATCAGCGTGTTGAACGGGGGTTGTACGTCTGTGAGACGTGTGATGCAGCGTTCAACGCTG
ATGTGAACGGGGCGGAGAATATCCGTCTCGACATAAACGAAAGTAACTCCGAGTCTTCGACCAGTTTGGACGAAGATAGGAGTACCGGCTGGTTGGCACA
GCCCGGAGTCTACCTGTATGACTTGTCCAGCGGATTCCAACCGCAGGTTCAAGTGGTAGACTGCAAACCGTAATATCCCAATCCAGCGGCGCGGTGCCGT
GGGATTCCTCCGCATTCAGGCGGAGGAGGATGTCAA
AATACGAACCTTTACAATAAATACGTGTATAACTGATTATACAGACGTTCAGAATGCTGGAAGTCCATCGCACCCACCAAGCCAAAATCCTCAACCACCG
ACAGGTAGAGGAGATGCTCGACCGCCACGGGTGGTCGGCCAGCAAACTCTGGAACGTCGCCAACTACCACTCCCGCCAAGTCTGGGACGAAACCAGCGAG
ATCCCCGACCACGGCGACCTCAAAGACGAGTTGAAGACACATCCAATATACAAGGGACTGCATTCACAGTCCAGTCAGCGCGTTCTGGAGGAACTCGCTG
AGGCCTTCAACTCATGGTACGGTAAGAAACAGTCCGATAATCGAGCGAACCCACCCGGCTACCGCAAGAAAAACTACTACGACACCCAAGGACGCCGCGT
CCACGAAGAACACCCGCGTTCTACCGTGACGTGGAAGCGGAACGGCATCAAACACGACTCGAAGAACAACCGGGTTCGGCTCTCAAAAGGCGCGAATCAC
AAGGAACACCCGAAAGCATGGGAATACATCCTTGTCGAATACGAAACCCGTCCCGGCGTCGTGGTTGAGAACCTGCAACAGGTTCGCGCCGTCTACGACA
AGGCGAAGGGACGCTGGGAACTCCACCTCGTCTGCAAAGACGAAATCGGAACTCCTGACGCTCCCGGCACCGAGTCAGCTGGTGTTGACCTCGGCATTTG
TAACTTCGCGGCAGTTGCGTACAGTACCGAGGACGCCGACCTGTACCCCGGCAATCGTCTGAAACAAGACGGGTACTACTTCCCGAAAGAGATCGCCAAG
TGCGATGACTCGAGTGGCGACAGAGCGACCCGTCTTCACAACAAGTGGTCGGAGCGCCGCACGCACTTCTTCCACAGTCTCGCCAAACACATCGTCCAGC
GGTGTGTCGAGAAAGATGTTGGCCGCATCAACGTCGGGGACTTAGAAGGAGTCCGTGAAGACGGAAATGGTGAGTCGAAAAACTGGGGCACGCACAGCAA
CCTCGACCTGCACGGGTGGGCGTTCGACCGCTTTACCAACATTCTCGAATACAAGGCGAAAGTCGAAGGGATTGATGTCGTAGACGTGTCCGAGCGCGAC
ACGAGCAAGACATGTTGCGTGTGTGGTAAGGAAGACGAGAATCAGCGTGTTGAACGGGGGTTGTACGTCTGTGAGACGTGTGATGCAGCGTTCAACGCTG
ATGTGAACGGGGCGGAGAATATCCGTCTCGACATAAACGAAAGTAACTCCGAGTCTTCGACCAGTTTGGACGAAGATAGGAGTACCGGCTGGTTGGCACA
GCCCGGAGTCTACCTGTATGACTTGTCCAGCGGATTCCAACCGCAGGTTCAAGTGGTAGACTGCAAACCGTAATATCCCAATCCAGCGGCGCGGTGCCGT
GGGATTCCTCCGCATTCAGGCGGAGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1320 bp | 439 aa | 154 | 1473 | + | No |
AG : TnpB
ORF sequence :
MLEVHRTHQAKILNHRQVEEMLDRHGWSASKLWNVANYHSRQVWDETSEIPDHGDLKDELKTHPIYKGLHSQSSQRVLEELAEAFNSWYGKKQSDNRANP
PGYRKKNYYDTQGRRVHEEHPRSTVTWKRNGIKHDSKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVVVENLQQVRAVYDKAKGRWELHLVCKDEIGT
PDAPGTESAGVDLGICNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIAKCDDSSGDRATRLHNKWSERRTHFFHSLAKHIVQRCVEKDVGRINVGDLEGV
REDGNGESKNWGTHSNLDLHGWAFDRFTNILEYKAKVEGIDVVDVSERDTSKTCCVCGKEDENQRVERGLYVCETCDAAFNADVNGAENIRLDINESNSE
SSTSLDEDRSTGWLAQPGVYLYDLSSGFQPQVQVVDCKP
PGYRKKNYYDTQGRRVHEEHPRSTVTWKRNGIKHDSKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVVVENLQQVRAVYDKAKGRWELHLVCKDEIGT
PDAPGTESAGVDLGICNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIAKCDDSSGDRATRLHNKWSERRTHFFHSLAKHIVQRCVEKDVGRINVGDLEGV
REDGNGESKNWGTHSNLDLHGWAFDRFTNILEYKAKVEGIDVVDVSERDTSKTCCVCGKEDENQRVERGLYVCETCDAAFNADVNGAENIRLDINESNSE
SSTSLDEDRSTGWLAQPGVYLYDLSSGFQPQVQVVDCKP
Blast result :
Comments
ISHaru2 is 93% (TnpB) aa similar to ISHbo10.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Roh,S.W. and Nam,Y.-D.(2014) Direct submission GenBank.
2] Roh,S.W. and Nam,Y.-D.(2014) Direct submission GenBank.