ISHaru1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
BBJO01000039 | ND | Halobellus rufus | Halobellus rufus CBA1103 |
DNA section
IS Length : 1488 bp
Ends
Left end : ACAGACTCAAGGAGAATACCTGCGCCTTTAGGCGCAGGATGAATCCGACAATATTCTACACCAGCCACACTTCGATGGCAAGGCCGGATGTTCCACGCCA II struct. : Yes
Right end : CGCCCCACGAGAACAGGTCGTGAACCGCGAACCTTAATATCCCAACTCAGCGGTGCGGTGCCGTGGGAGTCCCGCGTCTTCAGGCGCGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AGCTGAAAATCC | TTAT | CACGCCGAGAAC | tcaa |
DNA sequence
ACAGACTCAAGGAGAATACCTGCGCCTTTAGGCGCAGGATGAATCCGACAATATTCTACACCAGCCACACTTCGATGGCAAGGCCGGATGTTCCACGCCA
ACCGACACTATTAACAAAACAGCATTCATAACCAGTTATGAAGCCAGAAAATGAGTCGAACCGTCCGAACCTTCGAGGCCACGATTACGAACCAGCGACA
GGTTCGTAACGACCTCGACCAACTCGGATGGGCCGCCTCAAAACTCTGGAACGTTGGTCGCTACTACACACAAGAACAGTGGGACGAAACGGGCGAGATT
CCCGATGACGGGGAACTCAAAGCCGAACTGAAAGGCCACGAACGCTACACGGACTTACATTCTCAATCCAGTCAGCGCGTTCTCGAAGAACTCGCTGAAG
CGTTCAACGGCTGGTTCGGCAAGCGTCGGAACGGCGACGACCGTGCCCGACCGCCCGGCTACCGCAAAAACGGAGATTCCCACCCGCGTTCAACCGTGTC
GTTCAAAGCGGCTGGATTCAAGCACGATGCACAGTTCACCCGTGTCCGCCTCTCGAAAGGCCGGAACCTCAAAAAACACCGTTCGGACTTCATCTTGTGC
GAGTGCCAGACTCGCCCGGATGTTGACCTGACCGAGTGGGACGTTCAACAGGTTCGCGCTGTTTACAAGCGCGATGAGTGGCGTTTACAATTCGTCTGTC
GAACCACTATCGACCCGGAAACGCCCGGCGACGAGGTGGCAGGTGTTGACCTTGGGATTTGCAACTTCGCCGCCGTCTCGTTCGGCGGTGAATCGGTGTT
GTACCCCGGTGGCGCACTCAAAGAGGACGAATACTACTTCACGAAGAAGAAAGCAAAGTGCGACGATTCCTCGTCCCGAGAGGCCACTCGTCTTGACCGA
AAGCGAACGGGTCGTCGGACGCACTTCTTGCACGCACTCTCGAAAGCAATCGTAGAGGAGTGCGTGGAACGAGGCGTCGGAACCCTTGTCGTTGGCGACC
TTGGCGGTATCCGAGAAGACGACGAGAACGGCGAACCTCAGAATTGGGGCGACCACGGCAATCTAGACTTGCACGGGTGGGCGTTCGACCGCTTCACGAC
GCTACTTGATTACAAGGCGGAAGCCGAGGGCATCGACGTGGAGTTGGTGTCCGAACACGATACGTCGAAGTCGTGTTCGGCGTGCGGTCAGACGGACAAC
AATCAGCGCGTTGAACGCGGGCTGTACGTGTGTGAGGAGTGCGACACGGTGGCGAATGCGGACGTGAATGGTGCGGAGAATATTCGGCAAAAGGTACTCC
CGAGTCTCGCCACGGACGGCGGTGATAGGGATAACGGCTGGTTGGCACAGCCAGCGGTTCACCTGTTCGACCGTAGTGAGGGCCGTTTCGCCCCACGAGA
ACAGGTCGTGAACCGCGAACCTTAATATCCCAACTCAGCGGTGCGGTGCCGTGGGAGTCCCGCGTCTTCAGGCGCGGGAGGATGTCAA
ACCGACACTATTAACAAAACAGCATTCATAACCAGTTATGAAGCCAGAAAATGAGTCGAACCGTCCGAACCTTCGAGGCCACGATTACGAACCAGCGACA
GGTTCGTAACGACCTCGACCAACTCGGATGGGCCGCCTCAAAACTCTGGAACGTTGGTCGCTACTACACACAAGAACAGTGGGACGAAACGGGCGAGATT
CCCGATGACGGGGAACTCAAAGCCGAACTGAAAGGCCACGAACGCTACACGGACTTACATTCTCAATCCAGTCAGCGCGTTCTCGAAGAACTCGCTGAAG
CGTTCAACGGCTGGTTCGGCAAGCGTCGGAACGGCGACGACCGTGCCCGACCGCCCGGCTACCGCAAAAACGGAGATTCCCACCCGCGTTCAACCGTGTC
GTTCAAAGCGGCTGGATTCAAGCACGATGCACAGTTCACCCGTGTCCGCCTCTCGAAAGGCCGGAACCTCAAAAAACACCGTTCGGACTTCATCTTGTGC
GAGTGCCAGACTCGCCCGGATGTTGACCTGACCGAGTGGGACGTTCAACAGGTTCGCGCTGTTTACAAGCGCGATGAGTGGCGTTTACAATTCGTCTGTC
GAACCACTATCGACCCGGAAACGCCCGGCGACGAGGTGGCAGGTGTTGACCTTGGGATTTGCAACTTCGCCGCCGTCTCGTTCGGCGGTGAATCGGTGTT
GTACCCCGGTGGCGCACTCAAAGAGGACGAATACTACTTCACGAAGAAGAAAGCAAAGTGCGACGATTCCTCGTCCCGAGAGGCCACTCGTCTTGACCGA
AAGCGAACGGGTCGTCGGACGCACTTCTTGCACGCACTCTCGAAAGCAATCGTAGAGGAGTGCGTGGAACGAGGCGTCGGAACCCTTGTCGTTGGCGACC
TTGGCGGTATCCGAGAAGACGACGAGAACGGCGAACCTCAGAATTGGGGCGACCACGGCAATCTAGACTTGCACGGGTGGGCGTTCGACCGCTTCACGAC
GCTACTTGATTACAAGGCGGAAGCCGAGGGCATCGACGTGGAGTTGGTGTCCGAACACGATACGTCGAAGTCGTGTTCGGCGTGCGGTCAGACGGACAAC
AATCAGCGCGTTGAACGCGGGCTGTACGTGTGTGAGGAGTGCGACACGGTGGCGAATGCGGACGTGAATGGTGCGGAGAATATTCGGCAAAAGGTACTCC
CGAGTCTCGCCACGGACGGCGGTGATAGGGATAACGGCTGGTTGGCACAGCCAGCGGTTCACCTGTTCGACCGTAGTGAGGGCCGTTTCGCCCCACGAGA
ACAGGTCGTGAACCGCGAACCTTAATATCCCAACTCAGCGGTGCGGTGCCGTGGGAGTCCCGCGTCTTCAGGCGCGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 151 | 1425 | + | No |
AG : TnpB
ORF sequence :
MSRTVRTFEATITNQRQVRNDLDQLGWAASKLWNVGRYYTQEQWDETGEIPDDGELKAELKGHERYTDLHSQSSQRVLEELAEAFNGWFGKRRNGDDRAR
PPGYRKNGDSHPRSTVSFKAAGFKHDAQFTRVRLSKGRNLKKHRSDFILCECQTRPDVDLTEWDVQQVRAVYKRDEWRLQFVCRTTIDPETPGDEVAGVD
LGICNFAAVSFGGESVLYPGGALKEDEYYFTKKKAKCDDSSSREATRLDRKRTGRRTHFLHALSKAIVEECVERGVGTLVVGDLGGIREDDENGEPQNWG
DHGNLDLHGWAFDRFTTLLDYKAEAEGIDVELVSEHDTSKSCSACGQTDNNQRVERGLYVCEECDTVANADVNGAENIRQKVLPSLATDGGDRDNGWLAQ
PAVHLFDRSEGRFAPREQVVNREP
PPGYRKNGDSHPRSTVSFKAAGFKHDAQFTRVRLSKGRNLKKHRSDFILCECQTRPDVDLTEWDVQQVRAVYKRDEWRLQFVCRTTIDPETPGDEVAGVD
LGICNFAAVSFGGESVLYPGGALKEDEYYFTKKKAKCDDSSSREATRLDRKRTGRRTHFLHALSKAIVEECVERGVGTLVVGDLGGIREDDENGEPQNWG
DHGNLDLHGWAFDRFTTLLDYKAEAEGIDVELVSEHDTSKSCSACGQTDNNQRVERGLYVCEECDTVANADVNGAENIRQKVLPSLATDGGDRDNGWLAQ
PAVHLFDRSEGRFAPREQVVNREP
Blast result :
Comments
ISHaru1 is 96% (TnpB) aa similar to ISHtu4.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Roh,S.W. and Nam,Y.-D.(2014) Direct submission GenBank.
2] Roh,S.W. and Nam,Y.-D.(2014) Direct submission GenBank.