ISHaru1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BBJO01000039 ND Halobellus rufus
Halobellus rufus CBA1103
DNA section
IS Length : 1488 bp

Ends


Left end : ACAGACTCAAGGAGAATACCTGCGCCTTTAGGCGCAGGATGAATCCGACAATATTCTACACCAGCCACACTTCGATGGCAAGGCCGGATGTTCCACGCCA II struct. : Yes
Right end : CGCCCCACGAGAACAGGTCGTGAACCGCGAACCTTAATATCCCAACTCAGCGGTGCGGTGCCGTGGGAGTCCCGCGTCTTCAGGCGCGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AGCTGAAAATCCTTATCACGCCGAGAACtcaa

DNA sequence

ACAGACTCAAGGAGAATACCTGCGCCTTTAGGCGCAGGATGAATCCGACAATATTCTACACCAGCCACACTTCGATGGCAAGGCCGGATGTTCCACGCCA
ACCGACACTATTAACAAAACAGCATTCATAACCAGTTATGAAGCCAGAAAATGAGTCGAACCGTCCGAACCTTCGAGGCCACGATTACGAACCAGCGACA
GGTTCGTAACGACCTCGACCAACTCGGATGGGCCGCCTCAAAACTCTGGAACGTTGGTCGCTACTACACACAAGAACAGTGGGACGAAACGGGCGAGATT
CCCGATGACGGGGAACTCAAAGCCGAACTGAAAGGCCACGAACGCTACACGGACTTACATTCTCAATCCAGTCAGCGCGTTCTCGAAGAACTCGCTGAAG
CGTTCAACGGCTGGTTCGGCAAGCGTCGGAACGGCGACGACCGTGCCCGACCGCCCGGCTACCGCAAAAACGGAGATTCCCACCCGCGTTCAACCGTGTC
GTTCAAAGCGGCTGGATTCAAGCACGATGCACAGTTCACCCGTGTCCGCCTCTCGAAAGGCCGGAACCTCAAAAAACACCGTTCGGACTTCATCTTGTGC
GAGTGCCAGACTCGCCCGGATGTTGACCTGACCGAGTGGGACGTTCAACAGGTTCGCGCTGTTTACAAGCGCGATGAGTGGCGTTTACAATTCGTCTGTC
GAACCACTATCGACCCGGAAACGCCCGGCGACGAGGTGGCAGGTGTTGACCTTGGGATTTGCAACTTCGCCGCCGTCTCGTTCGGCGGTGAATCGGTGTT
GTACCCCGGTGGCGCACTCAAAGAGGACGAATACTACTTCACGAAGAAGAAAGCAAAGTGCGACGATTCCTCGTCCCGAGAGGCCACTCGTCTTGACCGA
AAGCGAACGGGTCGTCGGACGCACTTCTTGCACGCACTCTCGAAAGCAATCGTAGAGGAGTGCGTGGAACGAGGCGTCGGAACCCTTGTCGTTGGCGACC
TTGGCGGTATCCGAGAAGACGACGAGAACGGCGAACCTCAGAATTGGGGCGACCACGGCAATCTAGACTTGCACGGGTGGGCGTTCGACCGCTTCACGAC
GCTACTTGATTACAAGGCGGAAGCCGAGGGCATCGACGTGGAGTTGGTGTCCGAACACGATACGTCGAAGTCGTGTTCGGCGTGCGGTCAGACGGACAAC
AATCAGCGCGTTGAACGCGGGCTGTACGTGTGTGAGGAGTGCGACACGGTGGCGAATGCGGACGTGAATGGTGCGGAGAATATTCGGCAAAAGGTACTCC
CGAGTCTCGCCACGGACGGCGGTGATAGGGATAACGGCTGGTTGGCACAGCCAGCGGTTCACCTGTTCGACCGTAGTGAGGGCCGTTTCGCCCCACGAGA
ACAGGTCGTGAACCGCGAACCTTAATATCCCAACTCAGCGGTGCGGTGCCGTGGGAGTCCCGCGTCTTCAGGCGCGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1275 bp424 aa1511425+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSRTVRTFEATITNQRQVRNDLDQLGWAASKLWNVGRYYTQEQWDETGEIPDDGELKAELKGHERYTDLHSQSSQRVLEELAEAFNGWFGKRRNGDDRAR
PPGYRKNGDSHPRSTVSFKAAGFKHDAQFTRVRLSKGRNLKKHRSDFILCECQTRPDVDLTEWDVQQVRAVYKRDEWRLQFVCRTTIDPETPGDEVAGVD
LGICNFAAVSFGGESVLYPGGALKEDEYYFTKKKAKCDDSSSREATRLDRKRTGRRTHFLHALSKAIVEECVERGVGTLVVGDLGGIREDDENGEPQNWG
DHGNLDLHGWAFDRFTTLLDYKAEAEGIDVELVSEHDTSKSCSACGQTDNNQRVERGLYVCEECDTVANADVNGAENIRQKVLPSLATDGGDRDNGWLAQ
PAVHLFDRSEGRFAPREQVVNREP

 

Blast result :
Comments
ISHaru1 is 96% (TnpB) aa similar to ISHtu4.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Roh,S.W. and Nam,Y.-D.(2014) Direct submission GenBank.