ISHti9
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF571520 | ND | Halorhabdus tiamatea | Halorhabdus tiamatea SARL4B |
DNA section
IS Length : 1587 bp
Ends
Left end : GGAAGATTCGAGGCGAAAGCCTCGCCCTTCAGGGCGGGAATGAAGCCGAAATGATATATCACTTTCTGCGTGACTGTGGCCTTCTGTAATCCTAATGTTT II struct. : No
Right end : AACCCAGCGTCAGCGAACCCGCAAGTTCACAGCCGGGGTAATCGACTGACTGGATTACCCACGGAGGAATCCTCGTGCTTCAGCGCGGGGAGGAAGTCAA II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AGAGTGGTTGGC | TTAC | GCGTCCGTCGGC | tcaa |
DNA sequence
GGAAGATTCGAGGCGAAAGCCTCGCCCTTCAGGGCGGGAATGAAGCCGAAATGATATATCACTTTCTGCGTGACTGTGGCCTTCTGTAATCCTAATGTTT
ATAATATCTGACTTTGAATAATTGGATGTGAGCGACCGGCCACGGCGAACGAATACGTACACTGCCGACCCGGTCACTGACCGGTATCGGGAGTGCCTGT
TTGACTGGCTGGCCGCACACGCCCCGCTCTGGAACCAGATCACCTACCGTCGCCGTCAACAGTACTTCGACGACGATGGTGACGTGTGGGACGCTGAGTA
CACCGACCTATACGAGAAGTACGCTCCCCTGCTCGGGAAAGCAACGTGCCAGCAACTTGCACGGAAAAACAGCGAAGCCTGGCGGAGCCACTTCGAATTG
CTCTCACTGTACCGTGACGAGTCGAATCAGACTGTGACGGAGAAACCGTCACCACCCGGGTATTGGGGGAATCGCGACGACGGCTACGAGTTGCACGGTC
TCGTCCGGAACGACCTCTACACGTTCGATTGGGATGAGGACAAGAGTACAGTCGAATTCGGCGTCGGTGACGTACTCGAAGATCGCTACGATTTCGACCA
CAACGAACGCATCACCCTCGAAGTCCGAGGCAATCCGCAGTGGCGTGGCGACGACAGTCGATTGGAACTCATCTACGATGAGCACGCTGACCAGCTTCGT
GTCCAGCACCCTGTCCGCATTCAGTCAGACGACGTGCAAGAACAGCGGCAGGATGCCTTCACTCACACACTCAACGACGAGAACACGACGCAGTCAGCCG
CAATCGATGTTGGCGCAAACAATACACTGGCGGTCGTCACGGAAACCGGTAACACTGCCGTATACCACGCCCGGCCCGAGTTCGAACGGTTCCAGGACCA
CTCGGAGCGAATCGCAGCCCTCCAATCCAAACTCCCCGAAGAGCAGTACACGAGTGGTCGGATTCAACGCGTGTCCGATCAGCGGTCACGGCAGCGTGAT
CATAGCCGCGATGCAGCGGTGAAACACGCCGCTGAGTGGCTCCTCAAACAGAACGTTGACACGGTGTACGTCGGTGACTTAACTGACGTACTGGAGACGC
ACTGGTCTGCGGATGTGAATGAGAAGACGCACGCGTTCTGGTCGCACCGCCAACTCGTTGAACGGATCACACTCACGCTTGGTGATGTTGGCATCACCGT
GATGGAGACTGGTGAATACGATTCGAGCAGTGAGTGTCCGATGTGTGGGAGTGGTGCGGTCACTCGGAGCGGTGATTCGTTCCGGTGTGACGCGTGCGAC
TTAGAGGCGCACGCGGATGTTGTGGGGGCATGGAATATCTTGCAGTCTGAAGTTGGGCCGATGGCTCGGCCTGCTGCCCTGTCTGCTGAACGCGGTAGGG
ACGCACCTACGGATGGGGCGTACTGGCAGTGGAACGACCACGAGTGGATACCCGCCAAGTTTGGGGAACAGTCGTGGTCGCTTGACCAACCCAGCGTCAG
CGAACCCGCAAGTTCACAGCCGGGGTAATCGACTGACTGGATTACCCACGGAGGAATCCTCGTGCTTCAGCGCGGGGAGGAAGTCAA
ATAATATCTGACTTTGAATAATTGGATGTGAGCGACCGGCCACGGCGAACGAATACGTACACTGCCGACCCGGTCACTGACCGGTATCGGGAGTGCCTGT
TTGACTGGCTGGCCGCACACGCCCCGCTCTGGAACCAGATCACCTACCGTCGCCGTCAACAGTACTTCGACGACGATGGTGACGTGTGGGACGCTGAGTA
CACCGACCTATACGAGAAGTACGCTCCCCTGCTCGGGAAAGCAACGTGCCAGCAACTTGCACGGAAAAACAGCGAAGCCTGGCGGAGCCACTTCGAATTG
CTCTCACTGTACCGTGACGAGTCGAATCAGACTGTGACGGAGAAACCGTCACCACCCGGGTATTGGGGGAATCGCGACGACGGCTACGAGTTGCACGGTC
TCGTCCGGAACGACCTCTACACGTTCGATTGGGATGAGGACAAGAGTACAGTCGAATTCGGCGTCGGTGACGTACTCGAAGATCGCTACGATTTCGACCA
CAACGAACGCATCACCCTCGAAGTCCGAGGCAATCCGCAGTGGCGTGGCGACGACAGTCGATTGGAACTCATCTACGATGAGCACGCTGACCAGCTTCGT
GTCCAGCACCCTGTCCGCATTCAGTCAGACGACGTGCAAGAACAGCGGCAGGATGCCTTCACTCACACACTCAACGACGAGAACACGACGCAGTCAGCCG
CAATCGATGTTGGCGCAAACAATACACTGGCGGTCGTCACGGAAACCGGTAACACTGCCGTATACCACGCCCGGCCCGAGTTCGAACGGTTCCAGGACCA
CTCGGAGCGAATCGCAGCCCTCCAATCCAAACTCCCCGAAGAGCAGTACACGAGTGGTCGGATTCAACGCGTGTCCGATCAGCGGTCACGGCAGCGTGAT
CATAGCCGCGATGCAGCGGTGAAACACGCCGCTGAGTGGCTCCTCAAACAGAACGTTGACACGGTGTACGTCGGTGACTTAACTGACGTACTGGAGACGC
ACTGGTCTGCGGATGTGAATGAGAAGACGCACGCGTTCTGGTCGCACCGCCAACTCGTTGAACGGATCACACTCACGCTTGGTGATGTTGGCATCACCGT
GATGGAGACTGGTGAATACGATTCGAGCAGTGAGTGTCCGATGTGTGGGAGTGGTGCGGTCACTCGGAGCGGTGATTCGTTCCGGTGTGACGCGTGCGAC
TTAGAGGCGCACGCGGATGTTGTGGGGGCATGGAATATCTTGCAGTCTGAAGTTGGGCCGATGGCTCGGCCTGCTGCCCTGTCTGCTGAACGCGGTAGGG
ACGCACCTACGGATGGGGCGTACTGGCAGTGGAACGACCACGAGTGGATACCCGCCAAGTTTGGGGAACAGTCGTGGTCGCTTGACCAACCCAGCGTCAG
CGAACCCGCAAGTTCACAGCCGGGGTAATCGACTGACTGGATTACCCACGGAGGAATCCTCGTGCTTCAGCGCGGGGAGGAAGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1401 bp | 466 aa | 128 | 1528 | + | No |
AG : TnpB
ORF sequence :
MSDRPRRTNTYTADPVTDRYRECLFDWLAAHAPLWNQITYRRRQQYFDDDGDVWDAEYTDLYEKYAPLLGKATCQQLARKNSEAWRSHFELLSLYRDESN
QTVTEKPSPPGYWGNRDDGYELHGLVRNDLYTFDWDEDKSTVEFGVGDVLEDRYDFDHNERITLEVRGNPQWRGDDSRLELIYDEHADQLRVQHPVRIQS
DDVQEQRQDAFTHTLNDENTTQSAAIDVGANNTLAVVTETGNTAVYHARPEFERFQDHSERIAALQSKLPEEQYTSGRIQRVSDQRSRQRDHSRDAAVKH
AAEWLLKQNVDTVYVGDLTDVLETHWSADVNEKTHAFWSHRQLVERITLTLGDVGITVMETGEYDSSSECPMCGSGAVTRSGDSFRCDACDLEAHADVVG
AWNILQSEVGPMARPAALSAERGRDAPTDGAYWQWNDHEWIPAKFGEQSWSLDQPSVSEPASSQPG
QTVTEKPSPPGYWGNRDDGYELHGLVRNDLYTFDWDEDKSTVEFGVGDVLEDRYDFDHNERITLEVRGNPQWRGDDSRLELIYDEHADQLRVQHPVRIQS
DDVQEQRQDAFTHTLNDENTTQSAAIDVGANNTLAVVTETGNTAVYHARPEFERFQDHSERIAALQSKLPEEQYTSGRIQRVSDQRSRQRDHSRDAAVKH
AAEWLLKQNVDTVYVGDLTDVLETHWSADVNEKTHAFWSHRQLVERITLTLGDVGITVMETGEYDSSSECPMCGSGAVTRSGDSFRCDACDLEAHADVVG
AWNILQSEVGPMARPAALSAERGRDAPTDGAYWQWNDHEWIPAKFGEQSWSLDQPSVSEPASSQPG
Blast result :
Comments
ISHti9 is 88% (TnpB) aa similar to ISNph17.
References
1] Pfeiffer F. (2015) Direct submission to ISfinder
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)