ISHti9

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF571520 ND Halorhabdus tiamatea
Halorhabdus tiamatea SARL4B
DNA section
IS Length : 1587 bp

Ends


Left end : GGAAGATTCGAGGCGAAAGCCTCGCCCTTCAGGGCGGGAATGAAGCCGAAATGATATATCACTTTCTGCGTGACTGTGGCCTTCTGTAATCCTAATGTTT II struct. : No
Right end : AACCCAGCGTCAGCGAACCCGCAAGTTCACAGCCGGGGTAATCGACTGACTGGATTACCCACGGAGGAATCCTCGTGCTTCAGCGCGGGGAGGAAGTCAA II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AGAGTGGTTGGCTTACGCGTCCGTCGGCtcaa

DNA sequence

GGAAGATTCGAGGCGAAAGCCTCGCCCTTCAGGGCGGGAATGAAGCCGAAATGATATATCACTTTCTGCGTGACTGTGGCCTTCTGTAATCCTAATGTTT
ATAATATCTGACTTTGAATAATTGGATGTGAGCGACCGGCCACGGCGAACGAATACGTACACTGCCGACCCGGTCACTGACCGGTATCGGGAGTGCCTGT
TTGACTGGCTGGCCGCACACGCCCCGCTCTGGAACCAGATCACCTACCGTCGCCGTCAACAGTACTTCGACGACGATGGTGACGTGTGGGACGCTGAGTA
CACCGACCTATACGAGAAGTACGCTCCCCTGCTCGGGAAAGCAACGTGCCAGCAACTTGCACGGAAAAACAGCGAAGCCTGGCGGAGCCACTTCGAATTG
CTCTCACTGTACCGTGACGAGTCGAATCAGACTGTGACGGAGAAACCGTCACCACCCGGGTATTGGGGGAATCGCGACGACGGCTACGAGTTGCACGGTC
TCGTCCGGAACGACCTCTACACGTTCGATTGGGATGAGGACAAGAGTACAGTCGAATTCGGCGTCGGTGACGTACTCGAAGATCGCTACGATTTCGACCA
CAACGAACGCATCACCCTCGAAGTCCGAGGCAATCCGCAGTGGCGTGGCGACGACAGTCGATTGGAACTCATCTACGATGAGCACGCTGACCAGCTTCGT
GTCCAGCACCCTGTCCGCATTCAGTCAGACGACGTGCAAGAACAGCGGCAGGATGCCTTCACTCACACACTCAACGACGAGAACACGACGCAGTCAGCCG
CAATCGATGTTGGCGCAAACAATACACTGGCGGTCGTCACGGAAACCGGTAACACTGCCGTATACCACGCCCGGCCCGAGTTCGAACGGTTCCAGGACCA
CTCGGAGCGAATCGCAGCCCTCCAATCCAAACTCCCCGAAGAGCAGTACACGAGTGGTCGGATTCAACGCGTGTCCGATCAGCGGTCACGGCAGCGTGAT
CATAGCCGCGATGCAGCGGTGAAACACGCCGCTGAGTGGCTCCTCAAACAGAACGTTGACACGGTGTACGTCGGTGACTTAACTGACGTACTGGAGACGC
ACTGGTCTGCGGATGTGAATGAGAAGACGCACGCGTTCTGGTCGCACCGCCAACTCGTTGAACGGATCACACTCACGCTTGGTGATGTTGGCATCACCGT
GATGGAGACTGGTGAATACGATTCGAGCAGTGAGTGTCCGATGTGTGGGAGTGGTGCGGTCACTCGGAGCGGTGATTCGTTCCGGTGTGACGCGTGCGAC
TTAGAGGCGCACGCGGATGTTGTGGGGGCATGGAATATCTTGCAGTCTGAAGTTGGGCCGATGGCTCGGCCTGCTGCCCTGTCTGCTGAACGCGGTAGGG
ACGCACCTACGGATGGGGCGTACTGGCAGTGGAACGACCACGAGTGGATACCCGCCAAGTTTGGGGAACAGTCGTGGTCGCTTGACCAACCCAGCGTCAG
CGAACCCGCAAGTTCACAGCCGGGGTAATCGACTGACTGGATTACCCACGGAGGAATCCTCGTGCTTCAGCGCGGGGAGGAAGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1401 bp466 aa1281528+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSDRPRRTNTYTADPVTDRYRECLFDWLAAHAPLWNQITYRRRQQYFDDDGDVWDAEYTDLYEKYAPLLGKATCQQLARKNSEAWRSHFELLSLYRDESN
QTVTEKPSPPGYWGNRDDGYELHGLVRNDLYTFDWDEDKSTVEFGVGDVLEDRYDFDHNERITLEVRGNPQWRGDDSRLELIYDEHADQLRVQHPVRIQS
DDVQEQRQDAFTHTLNDENTTQSAAIDVGANNTLAVVTETGNTAVYHARPEFERFQDHSERIAALQSKLPEEQYTSGRIQRVSDQRSRQRDHSRDAAVKH
AAEWLLKQNVDTVYVGDLTDVLETHWSADVNEKTHAFWSHRQLVERITLTLGDVGITVMETGEYDSSSECPMCGSGAVTRSGDSFRCDACDLEAHADVVG
AWNILQSEVGPMARPAALSAERGRDAPTDGAYWQWNDHEWIPAKFGEQSWSLDQPSVSEPASSQPG

 

Blast result :
Comments
ISHti9 is 88% (TnpB) aa similar to ISNph17.
References
1] Pfeiffer F. (2015) Direct submission to ISfinder
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)