ISHalh1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halorubrum halophilum
Halorubrum halophilum
DNA section
IS Length : 1470 bp

Ends


Left end : CTGAATAGGCGGTAATCCCCCTTCCTCAACGAGCAGCGCAGTCCGCCCAAGCGGACAAGCAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGTCTCTC II struct. : No
Right end : CTGCGGACACTGCGGTTGTGTCTGCAAAGCACGTCGTAGAAACAGGAAGCCCCTGCCTCAAGGAGCCGCCGAAGGCGGTGAGTAGGCAGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ACGAGTCCTCGTTTAGATCGGTCGCTCGtcac

DNA sequence

CTGAATAGGCGGTAATCCCCCTTCCTCAACGAGCAGCGCAGTCCGCCCAAGCGGACAAGCAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGTCTCTC
AGACACGTGCTTGTTGCCGGATCACAGGCCCACGGGGAGACTACTTTCACTCCGGACGGCTAGGGTTGATACGTCTGTCACGTCTCTCTCGAAGTGCGTG
GAATGAACTACAACTACAGGTATCGCCTCAAGCCAACCGAGCGCCAGCGCGAGACGTTAGACTACCACCGCGATACCTGTCGACAACTCTACAACCACGC
CCTGTACCGGTTCAACCAGATCCCCGAACACGAGGGCACCGTTAAACAGCGTGTGCGGAAGATTCGTGACGAGCTTCCTGACCTCAAAGACTGGTGGGAT
GCACTCACCGACGTGTATTCGAAAGTACTTCAGCCCACGGTCATGCGGATTGCCAAGAATATCACCGCTCTCGGGAAGCTCAAAGAACAGGGCTACACCG
TCGGTGAACTTCGGTGGAAGTCGCCTCGGGAGTTTCGCAGTTTCACCTACAACCAGTCTGGCTTCGAACTCGACAAGAAGGGTGGTCAGACCGTGTTATC
TCTGTCGAAACTCGCGGATATCCCCATCGAACACCACCGATCGCTGCCTGACGACGCCACAGTCAAGGAAGTCACGCTCAAACAGGAGAAAACCGGCGAG
TGGTTCGCTATCTTCGGTATCGAGATGGACACAGACCCGCCGGCCAAGCCACCGTTGGAGGATGTTGGCACTGACGAGATGGTCGGGATCGACGTGGGCA
TCCTGAAATATGCCCACGACACTGACGGAACGGCAGTCGAATCGCTCGACCTCTCGGAAGAACGCGACAGACTCGAACGGGAGCAACGGAACCTCTCACG
CAAAGAGTACGAGTCGAACAACTGGGAGAACCAACGTCGGCGTGTCGCTGCGTGTCACCAGAAAATCAAGCGCAAACGGCGTGATTTCCTGCACAAACTC
TCGAACTACTACGCTCGGGAGTACGAACTGGTGGCCGTCGAAGACCTCGAGGTCAAAGGGATGCTCGAATCACCGCGAAACAGCCGCAATACGGCGTCAG
CGGCGTGGAATACCTTCTCCGACATGCTCGAAACGAAGTGTGAGCGTGAAGGCACGTATTTCGCGGAAGTTGGACCCGAAGGAACCACCAAAGAGTGCGC
TCAGTGTGGCGTCGAAACCGACAAGCCGCTGTGGGTGCGTGAACACTCCTGTCCAGCCTGTGGTTTCAAGGCGGACAGAGACGCAAACGCGGCGTGGAAC
ATTCTTTCTCGCGGACTCACCAAACTAGGAGTGGGCTACTCCGAAGGAACGCCTGTGGAGACTGCGCTCCCTGCGGACACTGCGGTTGTGTCTGCAAAGC
ACGTCGTAGAAACAGGAAGCCCCTGCCTCAAGGAGCCGCCGAAGGCGGTGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1263 bp420 aa2031465+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MNYNYRYRLKPTERQRETLDYHRDTCRQLYNHALYRFNQIPEHEGTVKQRVRKIRDELPDLKDWWDALTDVYSKVLQPTVMRIAKNITALGKLKEQGYTV
GELRWKSPREFRSFTYNQSGFELDKKGGQTVLSLSKLADIPIEHHRSLPDDATVKEVTLKQEKTGEWFAIFGIEMDTDPPAKPPLEDVGTDEMVGIDVGI
LKYAHDTDGTAVESLDLSEERDRLEREQRNLSRKEYESNNWENQRRRVAACHQKIKRKRRDFLHKLSNYYAREYELVAVEDLEVKGMLESPRNSRNTASA
AWNTFSDMLETKCEREGTYFAEVGPEGTTKECAQCGVETDKPLWVREHSCPACGFKADRDANAAWNILSRGLTKLGVGYSEGTPVETALPADTAVVSAKH
VVETGSPCLKEPPKAVSRQG

 

Blast result :
Comments
ISHalh1 is 92% (TnpB) aa similar to ISNph20.
References
1] Friedhelm Pfeiffer (2015) Direct submission.