ISHalh1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halorubrum halophilum | Halorubrum halophilum |
DNA section
IS Length : 1470 bp
Ends
Left end : CTGAATAGGCGGTAATCCCCCTTCCTCAACGAGCAGCGCAGTCCGCCCAAGCGGACAAGCAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGTCTCTC II struct. : No
Right end : CTGCGGACACTGCGGTTGTGTCTGCAAAGCACGTCGTAGAAACAGGAAGCCCCTGCCTCAAGGAGCCGCCGAAGGCGGTGAGTAGGCAGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ACGAGTCCTCGT | TTAG | ATCGGTCGCTCG | tcac |
DNA sequence
CTGAATAGGCGGTAATCCCCCTTCCTCAACGAGCAGCGCAGTCCGCCCAAGCGGACAAGCAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGTCTCTC
AGACACGTGCTTGTTGCCGGATCACAGGCCCACGGGGAGACTACTTTCACTCCGGACGGCTAGGGTTGATACGTCTGTCACGTCTCTCTCGAAGTGCGTG
GAATGAACTACAACTACAGGTATCGCCTCAAGCCAACCGAGCGCCAGCGCGAGACGTTAGACTACCACCGCGATACCTGTCGACAACTCTACAACCACGC
CCTGTACCGGTTCAACCAGATCCCCGAACACGAGGGCACCGTTAAACAGCGTGTGCGGAAGATTCGTGACGAGCTTCCTGACCTCAAAGACTGGTGGGAT
GCACTCACCGACGTGTATTCGAAAGTACTTCAGCCCACGGTCATGCGGATTGCCAAGAATATCACCGCTCTCGGGAAGCTCAAAGAACAGGGCTACACCG
TCGGTGAACTTCGGTGGAAGTCGCCTCGGGAGTTTCGCAGTTTCACCTACAACCAGTCTGGCTTCGAACTCGACAAGAAGGGTGGTCAGACCGTGTTATC
TCTGTCGAAACTCGCGGATATCCCCATCGAACACCACCGATCGCTGCCTGACGACGCCACAGTCAAGGAAGTCACGCTCAAACAGGAGAAAACCGGCGAG
TGGTTCGCTATCTTCGGTATCGAGATGGACACAGACCCGCCGGCCAAGCCACCGTTGGAGGATGTTGGCACTGACGAGATGGTCGGGATCGACGTGGGCA
TCCTGAAATATGCCCACGACACTGACGGAACGGCAGTCGAATCGCTCGACCTCTCGGAAGAACGCGACAGACTCGAACGGGAGCAACGGAACCTCTCACG
CAAAGAGTACGAGTCGAACAACTGGGAGAACCAACGTCGGCGTGTCGCTGCGTGTCACCAGAAAATCAAGCGCAAACGGCGTGATTTCCTGCACAAACTC
TCGAACTACTACGCTCGGGAGTACGAACTGGTGGCCGTCGAAGACCTCGAGGTCAAAGGGATGCTCGAATCACCGCGAAACAGCCGCAATACGGCGTCAG
CGGCGTGGAATACCTTCTCCGACATGCTCGAAACGAAGTGTGAGCGTGAAGGCACGTATTTCGCGGAAGTTGGACCCGAAGGAACCACCAAAGAGTGCGC
TCAGTGTGGCGTCGAAACCGACAAGCCGCTGTGGGTGCGTGAACACTCCTGTCCAGCCTGTGGTTTCAAGGCGGACAGAGACGCAAACGCGGCGTGGAAC
ATTCTTTCTCGCGGACTCACCAAACTAGGAGTGGGCTACTCCGAAGGAACGCCTGTGGAGACTGCGCTCCCTGCGGACACTGCGGTTGTGTCTGCAAAGC
ACGTCGTAGAAACAGGAAGCCCCTGCCTCAAGGAGCCGCCGAAGGCGGTGAGTAGGCAGGGGTAGTTCAC
AGACACGTGCTTGTTGCCGGATCACAGGCCCACGGGGAGACTACTTTCACTCCGGACGGCTAGGGTTGATACGTCTGTCACGTCTCTCTCGAAGTGCGTG
GAATGAACTACAACTACAGGTATCGCCTCAAGCCAACCGAGCGCCAGCGCGAGACGTTAGACTACCACCGCGATACCTGTCGACAACTCTACAACCACGC
CCTGTACCGGTTCAACCAGATCCCCGAACACGAGGGCACCGTTAAACAGCGTGTGCGGAAGATTCGTGACGAGCTTCCTGACCTCAAAGACTGGTGGGAT
GCACTCACCGACGTGTATTCGAAAGTACTTCAGCCCACGGTCATGCGGATTGCCAAGAATATCACCGCTCTCGGGAAGCTCAAAGAACAGGGCTACACCG
TCGGTGAACTTCGGTGGAAGTCGCCTCGGGAGTTTCGCAGTTTCACCTACAACCAGTCTGGCTTCGAACTCGACAAGAAGGGTGGTCAGACCGTGTTATC
TCTGTCGAAACTCGCGGATATCCCCATCGAACACCACCGATCGCTGCCTGACGACGCCACAGTCAAGGAAGTCACGCTCAAACAGGAGAAAACCGGCGAG
TGGTTCGCTATCTTCGGTATCGAGATGGACACAGACCCGCCGGCCAAGCCACCGTTGGAGGATGTTGGCACTGACGAGATGGTCGGGATCGACGTGGGCA
TCCTGAAATATGCCCACGACACTGACGGAACGGCAGTCGAATCGCTCGACCTCTCGGAAGAACGCGACAGACTCGAACGGGAGCAACGGAACCTCTCACG
CAAAGAGTACGAGTCGAACAACTGGGAGAACCAACGTCGGCGTGTCGCTGCGTGTCACCAGAAAATCAAGCGCAAACGGCGTGATTTCCTGCACAAACTC
TCGAACTACTACGCTCGGGAGTACGAACTGGTGGCCGTCGAAGACCTCGAGGTCAAAGGGATGCTCGAATCACCGCGAAACAGCCGCAATACGGCGTCAG
CGGCGTGGAATACCTTCTCCGACATGCTCGAAACGAAGTGTGAGCGTGAAGGCACGTATTTCGCGGAAGTTGGACCCGAAGGAACCACCAAAGAGTGCGC
TCAGTGTGGCGTCGAAACCGACAAGCCGCTGTGGGTGCGTGAACACTCCTGTCCAGCCTGTGGTTTCAAGGCGGACAGAGACGCAAACGCGGCGTGGAAC
ATTCTTTCTCGCGGACTCACCAAACTAGGAGTGGGCTACTCCGAAGGAACGCCTGTGGAGACTGCGCTCCCTGCGGACACTGCGGTTGTGTCTGCAAAGC
ACGTCGTAGAAACAGGAAGCCCCTGCCTCAAGGAGCCGCCGAAGGCGGTGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1263 bp | 420 aa | 203 | 1465 | + | No |
AG : TnpB
ORF sequence :
MNYNYRYRLKPTERQRETLDYHRDTCRQLYNHALYRFNQIPEHEGTVKQRVRKIRDELPDLKDWWDALTDVYSKVLQPTVMRIAKNITALGKLKEQGYTV
GELRWKSPREFRSFTYNQSGFELDKKGGQTVLSLSKLADIPIEHHRSLPDDATVKEVTLKQEKTGEWFAIFGIEMDTDPPAKPPLEDVGTDEMVGIDVGI
LKYAHDTDGTAVESLDLSEERDRLEREQRNLSRKEYESNNWENQRRRVAACHQKIKRKRRDFLHKLSNYYAREYELVAVEDLEVKGMLESPRNSRNTASA
AWNTFSDMLETKCEREGTYFAEVGPEGTTKECAQCGVETDKPLWVREHSCPACGFKADRDANAAWNILSRGLTKLGVGYSEGTPVETALPADTAVVSAKH
VVETGSPCLKEPPKAVSRQG
GELRWKSPREFRSFTYNQSGFELDKKGGQTVLSLSKLADIPIEHHRSLPDDATVKEVTLKQEKTGEWFAIFGIEMDTDPPAKPPLEDVGTDEMVGIDVGI
LKYAHDTDGTAVESLDLSEERDRLEREQRNLSRKEYESNNWENQRRRVAACHQKIKRKRRDFLHKLSNYYAREYELVAVEDLEVKGMLESPRNSRNTASA
AWNTFSDMLETKCEREGTYFAEVGPEGTTKECAQCGVETDKPLWVREHSCPACGFKADRDANAAWNILSRGLTKLGVGYSEGTPVETALPADTAVVSAKH
VVETGSPCLKEPPKAVSRQG
Blast result :
Comments
ISHalh1 is 92% (TnpB) aa similar to ISNph20.
References
1] Friedhelm Pfeiffer (2015) Direct submission.