ISHlsp1

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CBMA010000054 ND Halopiger sp.
Halopiger sp. IIH2
DNA section
IS Length : 1852 bp

Ends


Left end : AGAACCTGTGAGGGCGAGTTCCCCGACCCACCGGGGTCGAGGGTGAAGCCCGACACCCGGCCTAGTGTTCTGTCTTCTCGATATACGGTTCAGCAACTTC II struct. : No
Right end : GCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGCACACGGCTGAGGGAACTAGAAAAGCCTCGGGTCACCGCGCCCGAGGCTGTTTAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGCTCCCGGGAGTCTAAGGGTTTTGGAAC

DNA sequence

AGAACCTGTGAGGGCGAGTTCCCCGACCCACCGGGGTCGAGGGTGAAGCCCGACACCCGGCCTAGTGTTCTGTCTTCTCGATATACGGTTCAGCAACTTC
CTCAGACACTGCACCCGTCGTTCCAACGTAGTACCCACTCTTCCAAAATCCGCCACCCCAGAAAGACGATTCTCGAATCTCTGGATACCGTTCCAGTAAG
TGCTTGCCCGAGTACGACTTGAACTGTCGAGCAATATCCGACGGACTGTGTCTCGGGTCGCACTGGGCGAACAAGTGTACGTGGTCGTCCGCGATTTCCA
ACGCCAGAATTTCGTGTCCGAAGTGGTCGGCAGTCTCCGCAAACAACTCTCGAACGTCGTCCTCCACCACACCGAGAACCGGGTGTCGATACTTCGGACA
CCATACGAAATGATACTTGCAGGAACCAACCGAATGTGCATGACTGCGGTGTTCTTCCATCTCTAATCCTAGAATTTATGACTGTTTGGAACGATTGTTA
AAGCATGGGTGAAGAAGCCACGAAGACGATCCAGACGCGCCTCCACATAGCGTCTGGTGAACGATCGTGGCTTCACGACGCCCGCCTCGCATCACGCGAG
ATATTCACCCGAACCATCCGCCTCAAACAACAAGGGTACACTCGCACTGAGATACAGCAGGAGGTCGACCGCGACGACTTCTTGCGGAACAACAAGTGCG
CGGTCGTCGGCAAAGCCCTCCAAACGTGGAACTCCTATCAGTCACTCCTCGACTGGTGGCGCGACCAAGATGACCCTGATGGCGGCAAGCCGACGCCGCC
GAGTACGGACAAATCTGGTGCGTACCCGCTCGTGATGGCACACACGGAAGGTTACCGCCTTACCGTGGACGACGACACGAACCGCGTCCAGTTCCGCATC
AGCCCGAAACCCTACAAGAAGGTGAAAGGTCACCTGCGCGGCGAACCGGACGCGATGGACGAACTCCGAGCCGCCATCACGTCGGATGAGGTGGATGTTG
GGCAGGCCGAACTCCTGTACCGCGATGGCGTGTACTACCTACACGTCACGGTCACACGCGAGTTCGACGTGCCCGAACCCGATACCGCTGATACTGTAGT
TGGCGTGGACATCAACGAGCGCAACGTCGCTCTCACTGCTCTCGACCGCGAGACGATGCGGACGAAGGGCACGCTCGTCCTCGACTACGGACGAGTCAAA
CAGGAACGCCAACGCTACCACACGATCACCACTCGCTGTCAGGAACACGGCAAGACGAGCATCCACCAGAAACTCGGTGACAAGGAGCAGCGATTCACCG
AGTGGGTGTTGCATCGTCTTTTCCGTGCTGTCGTGGAGTTTGCAGAGCAGTTTTCAAATCCGGTCATCGTGTTCGAGGATATGAGCGGTATTCGCGACGA
AATCAAGTATGGGACGTATATGAACCGCCGGTTGCACAAACTCCCGTTCCACAAGTTCGAGACGTTCGTCTCGTACAAGGCGACGTGGCGAGAGATTCCC
ACGGACACGGTGGCCGCCTACCACAACTCGAAGACGTGTTCGTGCTGTGGTGAGCGTGGGGATCGGCAGGGACGGCGGTTCCGGTGTCCGAACGACGAGT
GTGACGTGGTGCAAGACCACGCTGATCGGAATGCGTCAGTGAACATCGCGTGGCGCGAGACGGCGAAACTCGACGGCAACGAATCGAATTACCGGACTCA
CGAAACCCAACCACAGGTCAGGTTGGTGCGTCTGTCCGGGTCGGGGCGCGTAAGCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGCA
CACGGCTGAGGGAACTAGAAAAGCCTCGGGTCACCGCGCCCGAGGCTGTTTAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
399 bp132 aa45961-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MEEHRSHAHSVGSCKYHFVWCPKYRHPVLGVVEDDVRELFAETADHFGHEILALEIADDHVHLFAQCDPRHSPSDIARQFKSYSGKHLLERYPEIRESSF
WGGGFWKSGYYVGTTGAVSEEVAEPYIEKTEH

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1305 bp434 aa5041808+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MGEEATKTIQTRLHIASGERSWLHDARLASREIFTRTIRLKQQGYTRTEIQQEVDRDDFLRNNKCAVVGKALQTWNSYQSLLDWWRDQDDPDGGKPTPPS
TDKSGAYPLVMAHTEGYRLTVDDDTNRVQFRISPKPYKKVKGHLRGEPDAMDELRAAITSDEVDVGQAELLYRDGVYYLHVTVTREFDVPEPDTADTVVG
VDINERNVALTALDRETMRTKGTLVLDYGRVKQERQRYHTITTRCQEHGKTSIHQKLGDKEQRFTEWVLHRLFRAVVEFAEQFSNPVIVFEDMSGIRDEI
KYGTYMNRRLHKLPFHKFETFVSYKATWREIPTDTVAAYHNSKTCSCCGERGDRQGRRFRCPNDECDVVQDHADRNASVNIAWRETAKLDGNESNYRTHE
TQPQVRLVRLSGSGRVSRPTSSRSLAEQGVLAHG

 

Blast result :
Comments
ISHlsp1 is 93% (TnpA : the transposase) aa similar to ISH34 and 97% (TnpB) aa similar to ISNin1.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Hassani,I. and Raoult,D. (2013) Direct submission GenBank.