ISHlsp1
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CBMA010000054 | ND | Halopiger sp. | Halopiger sp. IIH2 |
DNA section
IS Length : 1852 bp
Ends
Left end : AGAACCTGTGAGGGCGAGTTCCCCGACCCACCGGGGTCGAGGGTGAAGCCCGACACCCGGCCTAGTGTTCTGTCTTCTCGATATACGGTTCAGCAACTTC II struct. : No
Right end : GCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGCACACGGCTGAGGGAACTAGAAAAGCCTCGGGTCACCGCGCCCGAGGCTGTTTAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGCTCCCGGGAG | TCTAA | GGGTTTTGGAAC |
DNA sequence
AGAACCTGTGAGGGCGAGTTCCCCGACCCACCGGGGTCGAGGGTGAAGCCCGACACCCGGCCTAGTGTTCTGTCTTCTCGATATACGGTTCAGCAACTTC
CTCAGACACTGCACCCGTCGTTCCAACGTAGTACCCACTCTTCCAAAATCCGCCACCCCAGAAAGACGATTCTCGAATCTCTGGATACCGTTCCAGTAAG
TGCTTGCCCGAGTACGACTTGAACTGTCGAGCAATATCCGACGGACTGTGTCTCGGGTCGCACTGGGCGAACAAGTGTACGTGGTCGTCCGCGATTTCCA
ACGCCAGAATTTCGTGTCCGAAGTGGTCGGCAGTCTCCGCAAACAACTCTCGAACGTCGTCCTCCACCACACCGAGAACCGGGTGTCGATACTTCGGACA
CCATACGAAATGATACTTGCAGGAACCAACCGAATGTGCATGACTGCGGTGTTCTTCCATCTCTAATCCTAGAATTTATGACTGTTTGGAACGATTGTTA
AAGCATGGGTGAAGAAGCCACGAAGACGATCCAGACGCGCCTCCACATAGCGTCTGGTGAACGATCGTGGCTTCACGACGCCCGCCTCGCATCACGCGAG
ATATTCACCCGAACCATCCGCCTCAAACAACAAGGGTACACTCGCACTGAGATACAGCAGGAGGTCGACCGCGACGACTTCTTGCGGAACAACAAGTGCG
CGGTCGTCGGCAAAGCCCTCCAAACGTGGAACTCCTATCAGTCACTCCTCGACTGGTGGCGCGACCAAGATGACCCTGATGGCGGCAAGCCGACGCCGCC
GAGTACGGACAAATCTGGTGCGTACCCGCTCGTGATGGCACACACGGAAGGTTACCGCCTTACCGTGGACGACGACACGAACCGCGTCCAGTTCCGCATC
AGCCCGAAACCCTACAAGAAGGTGAAAGGTCACCTGCGCGGCGAACCGGACGCGATGGACGAACTCCGAGCCGCCATCACGTCGGATGAGGTGGATGTTG
GGCAGGCCGAACTCCTGTACCGCGATGGCGTGTACTACCTACACGTCACGGTCACACGCGAGTTCGACGTGCCCGAACCCGATACCGCTGATACTGTAGT
TGGCGTGGACATCAACGAGCGCAACGTCGCTCTCACTGCTCTCGACCGCGAGACGATGCGGACGAAGGGCACGCTCGTCCTCGACTACGGACGAGTCAAA
CAGGAACGCCAACGCTACCACACGATCACCACTCGCTGTCAGGAACACGGCAAGACGAGCATCCACCAGAAACTCGGTGACAAGGAGCAGCGATTCACCG
AGTGGGTGTTGCATCGTCTTTTCCGTGCTGTCGTGGAGTTTGCAGAGCAGTTTTCAAATCCGGTCATCGTGTTCGAGGATATGAGCGGTATTCGCGACGA
AATCAAGTATGGGACGTATATGAACCGCCGGTTGCACAAACTCCCGTTCCACAAGTTCGAGACGTTCGTCTCGTACAAGGCGACGTGGCGAGAGATTCCC
ACGGACACGGTGGCCGCCTACCACAACTCGAAGACGTGTTCGTGCTGTGGTGAGCGTGGGGATCGGCAGGGACGGCGGTTCCGGTGTCCGAACGACGAGT
GTGACGTGGTGCAAGACCACGCTGATCGGAATGCGTCAGTGAACATCGCGTGGCGCGAGACGGCGAAACTCGACGGCAACGAATCGAATTACCGGACTCA
CGAAACCCAACCACAGGTCAGGTTGGTGCGTCTGTCCGGGTCGGGGCGCGTAAGCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGCA
CACGGCTGAGGGAACTAGAAAAGCCTCGGGTCACCGCGCCCGAGGCTGTTTAC
CTCAGACACTGCACCCGTCGTTCCAACGTAGTACCCACTCTTCCAAAATCCGCCACCCCAGAAAGACGATTCTCGAATCTCTGGATACCGTTCCAGTAAG
TGCTTGCCCGAGTACGACTTGAACTGTCGAGCAATATCCGACGGACTGTGTCTCGGGTCGCACTGGGCGAACAAGTGTACGTGGTCGTCCGCGATTTCCA
ACGCCAGAATTTCGTGTCCGAAGTGGTCGGCAGTCTCCGCAAACAACTCTCGAACGTCGTCCTCCACCACACCGAGAACCGGGTGTCGATACTTCGGACA
CCATACGAAATGATACTTGCAGGAACCAACCGAATGTGCATGACTGCGGTGTTCTTCCATCTCTAATCCTAGAATTTATGACTGTTTGGAACGATTGTTA
AAGCATGGGTGAAGAAGCCACGAAGACGATCCAGACGCGCCTCCACATAGCGTCTGGTGAACGATCGTGGCTTCACGACGCCCGCCTCGCATCACGCGAG
ATATTCACCCGAACCATCCGCCTCAAACAACAAGGGTACACTCGCACTGAGATACAGCAGGAGGTCGACCGCGACGACTTCTTGCGGAACAACAAGTGCG
CGGTCGTCGGCAAAGCCCTCCAAACGTGGAACTCCTATCAGTCACTCCTCGACTGGTGGCGCGACCAAGATGACCCTGATGGCGGCAAGCCGACGCCGCC
GAGTACGGACAAATCTGGTGCGTACCCGCTCGTGATGGCACACACGGAAGGTTACCGCCTTACCGTGGACGACGACACGAACCGCGTCCAGTTCCGCATC
AGCCCGAAACCCTACAAGAAGGTGAAAGGTCACCTGCGCGGCGAACCGGACGCGATGGACGAACTCCGAGCCGCCATCACGTCGGATGAGGTGGATGTTG
GGCAGGCCGAACTCCTGTACCGCGATGGCGTGTACTACCTACACGTCACGGTCACACGCGAGTTCGACGTGCCCGAACCCGATACCGCTGATACTGTAGT
TGGCGTGGACATCAACGAGCGCAACGTCGCTCTCACTGCTCTCGACCGCGAGACGATGCGGACGAAGGGCACGCTCGTCCTCGACTACGGACGAGTCAAA
CAGGAACGCCAACGCTACCACACGATCACCACTCGCTGTCAGGAACACGGCAAGACGAGCATCCACCAGAAACTCGGTGACAAGGAGCAGCGATTCACCG
AGTGGGTGTTGCATCGTCTTTTCCGTGCTGTCGTGGAGTTTGCAGAGCAGTTTTCAAATCCGGTCATCGTGTTCGAGGATATGAGCGGTATTCGCGACGA
AATCAAGTATGGGACGTATATGAACCGCCGGTTGCACAAACTCCCGTTCCACAAGTTCGAGACGTTCGTCTCGTACAAGGCGACGTGGCGAGAGATTCCC
ACGGACACGGTGGCCGCCTACCACAACTCGAAGACGTGTTCGTGCTGTGGTGAGCGTGGGGATCGGCAGGGACGGCGGTTCCGGTGTCCGAACGACGAGT
GTGACGTGGTGCAAGACCACGCTGATCGGAATGCGTCAGTGAACATCGCGTGGCGCGAGACGGCGAAACTCGACGGCAACGAATCGAATTACCGGACTCA
CGAAACCCAACCACAGGTCAGGTTGGTGCGTCTGTCCGGGTCGGGGCGCGTAAGCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGCA
CACGGCTGAGGGAACTAGAAAAGCCTCGGGTCACCGCGCCCGAGGCTGTTTAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 459 | 61 | - | No |
Chemistry : Y1
ORF sequence :
MEEHRSHAHSVGSCKYHFVWCPKYRHPVLGVVEDDVRELFAETADHFGHEILALEIADDHVHLFAQCDPRHSPSDIARQFKSYSGKHLLERYPEIRESSF
WGGGFWKSGYYVGTTGAVSEEVAEPYIEKTEH
WGGGFWKSGYYVGTTGAVSEEVAEPYIEKTEH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 504 | 1808 | + | No |
AG : TnpB
ORF sequence :
MGEEATKTIQTRLHIASGERSWLHDARLASREIFTRTIRLKQQGYTRTEIQQEVDRDDFLRNNKCAVVGKALQTWNSYQSLLDWWRDQDDPDGGKPTPPS
TDKSGAYPLVMAHTEGYRLTVDDDTNRVQFRISPKPYKKVKGHLRGEPDAMDELRAAITSDEVDVGQAELLYRDGVYYLHVTVTREFDVPEPDTADTVVG
VDINERNVALTALDRETMRTKGTLVLDYGRVKQERQRYHTITTRCQEHGKTSIHQKLGDKEQRFTEWVLHRLFRAVVEFAEQFSNPVIVFEDMSGIRDEI
KYGTYMNRRLHKLPFHKFETFVSYKATWREIPTDTVAAYHNSKTCSCCGERGDRQGRRFRCPNDECDVVQDHADRNASVNIAWRETAKLDGNESNYRTHE
TQPQVRLVRLSGSGRVSRPTSSRSLAEQGVLAHG
TDKSGAYPLVMAHTEGYRLTVDDDTNRVQFRISPKPYKKVKGHLRGEPDAMDELRAAITSDEVDVGQAELLYRDGVYYLHVTVTREFDVPEPDTADTVVG
VDINERNVALTALDRETMRTKGTLVLDYGRVKQERQRYHTITTRCQEHGKTSIHQKLGDKEQRFTEWVLHRLFRAVVEFAEQFSNPVIVFEDMSGIRDEI
KYGTYMNRRLHKLPFHKFETFVSYKATWREIPTDTVAAYHNSKTCSCCGERGDRQGRRFRCPNDECDVVQDHADRNASVNIAWRETAKLDGNESNYRTHE
TQPQVRLVRLSGSGRVSRPTSSRSLAEQGVLAHG
Blast result :
Comments
ISHlsp1 is 93% (TnpA : the transposase) aa similar to ISH34 and 97% (TnpB) aa similar to ISNin1.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Hassani,I. and Raoult,D. (2013) Direct submission GenBank.
2] Hassani,I. and Raoult,D. (2013) Direct submission GenBank.