ISNhu2

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOIM01000007 ND Natrialba hulunbeirensis
Natrialba hulunbeirensis JCM 10989
DNA section
IS Length : 1433 bp

Ends


Left end : TTGGATATTAGGGCGCTAAGCCCCCGCCTCAAGGAACGAACGGCGTTAGCCGTGAGCGAGTAGGGCGGGGATACAGCGCCCGCACGAGTGACAATTGAGC II struct. : Yes
Right end : TGTGGACCCAATTACGGTGTCTGCAAGCCGTGTCGTCGAAGCAGGAAGCCCCTGCCTCGAGGAGCCAGCTTCCGCTGGCGAGTAGGCAGAGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTGTATATCGAGTTAGGTATCGGTACCTtcac

DNA sequence

TTGGATATTAGGGCGCTAAGCCCCCGCCTCAAGGAACGAACGGCGTTAGCCGTGAGCGAGTAGGGCGGGGATACAGCGCCCGCACGAGTGACAATTGAGC
CTAATCAGAACAGTTAATTAACCGTAACGAATAGCAGAGGATAAGTCGCATGGAGTACAGTCCACGATTCCGACTCTTCCCCTCGACCACGCAACGGGAG
GGTCTGGACTGGACTCGTGACATCGTGCGACAAGTCTACAACCACGCGCTCCACGAATTCAACAAAATTCCAGAAGGCAAGGGGACGCTCAGACAGCGCG
TCTGGCAAGTTCGAGACGACTTACCCAGTCTCAAACAACAGTGGACTGACCTCAAACAGGTCTATTCCACCGTGTTGCAGAAAGCTGTTGAACGTATCCG
AACCAACATTAACAACCTTGGCAAGCTGAAATCCAAAGGCTATGATGTTGGCTCGTTGAACTGGAAAGGACCGTGTGAGTATCGGAGTTTCACGTATCGG
CAATCGGGCTTCGAACTCGACAAGAAGAGTGGCCCACGAGACCGAGCAATTCTCCGACTCAAAAAAGTCCGCGGTGATACGCTTGAAATCCCAATCCGCT
TGCACCGTGACTTGCCCGAGCACGACGCTATCAAAGAGGTCACAGTGAAGAAAGAACCTACGGGAGCGTGGTACGCCTCGTTCTGCATCAGTACAGATGA
ACCAGTGAAACCTGATGTAGACAACATCGATACAGAGGATACCGTCGGCCTCGACCTTGGCGTCCGTAACTTCATCCACGATTCCGAAGGGCGTTCCATC
GGACGACTCGACCTGGCCGACGAGCGCGACCGCCTCGAACGCGAGCAACGCTCGCTCTCTCGCAAACAGTACGAGTCGAACAACTGGGAGAAACAACGGC
GTCGAGTTGCTGAAGTTCACACTCGCATGTCAAACAAGAAGCGCGATTACAAACATAAACTCGCGTATTTCTACGCGACGAAGTACGATGCCGTGTTTGT
CGAGGACTTGAACGTGAAGTCGATGCTGGAAGGTGATGGGAACGCACGGAACAAAGCCGAAGTGGGGTGGAGTGATTTCCGCAAAATTCTCGAACACCAC
TGTGACAAGCACGGCACGCACTACGTTGAAGTTCCTGCTCAGGGCACGACGAAGGAGTGTGCCAAGTGTGGCGCAGAAACCGAGAAGCCGTTGTGGGTTC
GAGAACACTCGTGCCCAGCGTGTGGGTTCGAGTTGGAGAGGGACTGGAACGCGGCTTTGAACGTAAAGTCGCGTGGTCTAGAGAAACTAGGAGTGGTTCA
CTCCAAAGCAACGCCTGTGGAGACTGCGACCGCTGTGGACCCAATTACGGTGTCTGCAAGCCGTGTCGTCGAAGCAGGAAGCCCCTGCCTCGAGGAGCCA
GCTTCCGCTGGCGAGTAGGCAGAGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1269 bp422 aa1501418+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEYSPRFRLFPSTTQREGLDWTRDIVRQVYNHALHEFNKIPEGKGTLRQRVWQVRDDLPSLKQQWTDLKQVYSTVLQKAVERIRTNINNLGKLKSKGYDV
GSLNWKGPCEYRSFTYRQSGFELDKKSGPRDRAILRLKKVRGDTLEIPIRLHRDLPEHDAIKEVTVKKEPTGAWYASFCISTDEPVKPDVDNIDTEDTVG
LDLGVRNFIHDSEGRSIGRLDLADERDRLEREQRSLSRKQYESNNWEKQRRRVAEVHTRMSNKKRDYKHKLAYFYATKYDAVFVEDLNVKSMLEGDGNAR
NKAEVGWSDFRKILEHHCDKHGTHYVEVPAQGTTKECAKCGAETEKPLWVREHSCPACGFELERDWNAALNVKSRGLEKLGVVHSKATPVETATAVDPIT
VSASRVVEAGSPCLEEPASAGE

 

Blast result :
Comments
ISNhu2 is 84% (TnpB) aa similar to ISHarch10.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.