ISNhu2
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOIM01000007 | ND | Natrialba hulunbeirensis | Natrialba hulunbeirensis JCM 10989 |
DNA section
IS Length : 1433 bp
Ends
Left end : TTGGATATTAGGGCGCTAAGCCCCCGCCTCAAGGAACGAACGGCGTTAGCCGTGAGCGAGTAGGGCGGGGATACAGCGCCCGCACGAGTGACAATTGAGC II struct. : Yes
Right end : TGTGGACCCAATTACGGTGTCTGCAAGCCGTGTCGTCGAAGCAGGAAGCCCCTGCCTCGAGGAGCCAGCTTCCGCTGGCGAGTAGGCAGAGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTGTATATCGAG | TTAG | GTATCGGTACCT | tcac |
DNA sequence
TTGGATATTAGGGCGCTAAGCCCCCGCCTCAAGGAACGAACGGCGTTAGCCGTGAGCGAGTAGGGCGGGGATACAGCGCCCGCACGAGTGACAATTGAGC
CTAATCAGAACAGTTAATTAACCGTAACGAATAGCAGAGGATAAGTCGCATGGAGTACAGTCCACGATTCCGACTCTTCCCCTCGACCACGCAACGGGAG
GGTCTGGACTGGACTCGTGACATCGTGCGACAAGTCTACAACCACGCGCTCCACGAATTCAACAAAATTCCAGAAGGCAAGGGGACGCTCAGACAGCGCG
TCTGGCAAGTTCGAGACGACTTACCCAGTCTCAAACAACAGTGGACTGACCTCAAACAGGTCTATTCCACCGTGTTGCAGAAAGCTGTTGAACGTATCCG
AACCAACATTAACAACCTTGGCAAGCTGAAATCCAAAGGCTATGATGTTGGCTCGTTGAACTGGAAAGGACCGTGTGAGTATCGGAGTTTCACGTATCGG
CAATCGGGCTTCGAACTCGACAAGAAGAGTGGCCCACGAGACCGAGCAATTCTCCGACTCAAAAAAGTCCGCGGTGATACGCTTGAAATCCCAATCCGCT
TGCACCGTGACTTGCCCGAGCACGACGCTATCAAAGAGGTCACAGTGAAGAAAGAACCTACGGGAGCGTGGTACGCCTCGTTCTGCATCAGTACAGATGA
ACCAGTGAAACCTGATGTAGACAACATCGATACAGAGGATACCGTCGGCCTCGACCTTGGCGTCCGTAACTTCATCCACGATTCCGAAGGGCGTTCCATC
GGACGACTCGACCTGGCCGACGAGCGCGACCGCCTCGAACGCGAGCAACGCTCGCTCTCTCGCAAACAGTACGAGTCGAACAACTGGGAGAAACAACGGC
GTCGAGTTGCTGAAGTTCACACTCGCATGTCAAACAAGAAGCGCGATTACAAACATAAACTCGCGTATTTCTACGCGACGAAGTACGATGCCGTGTTTGT
CGAGGACTTGAACGTGAAGTCGATGCTGGAAGGTGATGGGAACGCACGGAACAAAGCCGAAGTGGGGTGGAGTGATTTCCGCAAAATTCTCGAACACCAC
TGTGACAAGCACGGCACGCACTACGTTGAAGTTCCTGCTCAGGGCACGACGAAGGAGTGTGCCAAGTGTGGCGCAGAAACCGAGAAGCCGTTGTGGGTTC
GAGAACACTCGTGCCCAGCGTGTGGGTTCGAGTTGGAGAGGGACTGGAACGCGGCTTTGAACGTAAAGTCGCGTGGTCTAGAGAAACTAGGAGTGGTTCA
CTCCAAAGCAACGCCTGTGGAGACTGCGACCGCTGTGGACCCAATTACGGTGTCTGCAAGCCGTGTCGTCGAAGCAGGAAGCCCCTGCCTCGAGGAGCCA
GCTTCCGCTGGCGAGTAGGCAGAGGTAGTTCAC
CTAATCAGAACAGTTAATTAACCGTAACGAATAGCAGAGGATAAGTCGCATGGAGTACAGTCCACGATTCCGACTCTTCCCCTCGACCACGCAACGGGAG
GGTCTGGACTGGACTCGTGACATCGTGCGACAAGTCTACAACCACGCGCTCCACGAATTCAACAAAATTCCAGAAGGCAAGGGGACGCTCAGACAGCGCG
TCTGGCAAGTTCGAGACGACTTACCCAGTCTCAAACAACAGTGGACTGACCTCAAACAGGTCTATTCCACCGTGTTGCAGAAAGCTGTTGAACGTATCCG
AACCAACATTAACAACCTTGGCAAGCTGAAATCCAAAGGCTATGATGTTGGCTCGTTGAACTGGAAAGGACCGTGTGAGTATCGGAGTTTCACGTATCGG
CAATCGGGCTTCGAACTCGACAAGAAGAGTGGCCCACGAGACCGAGCAATTCTCCGACTCAAAAAAGTCCGCGGTGATACGCTTGAAATCCCAATCCGCT
TGCACCGTGACTTGCCCGAGCACGACGCTATCAAAGAGGTCACAGTGAAGAAAGAACCTACGGGAGCGTGGTACGCCTCGTTCTGCATCAGTACAGATGA
ACCAGTGAAACCTGATGTAGACAACATCGATACAGAGGATACCGTCGGCCTCGACCTTGGCGTCCGTAACTTCATCCACGATTCCGAAGGGCGTTCCATC
GGACGACTCGACCTGGCCGACGAGCGCGACCGCCTCGAACGCGAGCAACGCTCGCTCTCTCGCAAACAGTACGAGTCGAACAACTGGGAGAAACAACGGC
GTCGAGTTGCTGAAGTTCACACTCGCATGTCAAACAAGAAGCGCGATTACAAACATAAACTCGCGTATTTCTACGCGACGAAGTACGATGCCGTGTTTGT
CGAGGACTTGAACGTGAAGTCGATGCTGGAAGGTGATGGGAACGCACGGAACAAAGCCGAAGTGGGGTGGAGTGATTTCCGCAAAATTCTCGAACACCAC
TGTGACAAGCACGGCACGCACTACGTTGAAGTTCCTGCTCAGGGCACGACGAAGGAGTGTGCCAAGTGTGGCGCAGAAACCGAGAAGCCGTTGTGGGTTC
GAGAACACTCGTGCCCAGCGTGTGGGTTCGAGTTGGAGAGGGACTGGAACGCGGCTTTGAACGTAAAGTCGCGTGGTCTAGAGAAACTAGGAGTGGTTCA
CTCCAAAGCAACGCCTGTGGAGACTGCGACCGCTGTGGACCCAATTACGGTGTCTGCAAGCCGTGTCGTCGAAGCAGGAAGCCCCTGCCTCGAGGAGCCA
GCTTCCGCTGGCGAGTAGGCAGAGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1269 bp | 422 aa | 150 | 1418 | + | No |
AG : TnpB
ORF sequence :
MEYSPRFRLFPSTTQREGLDWTRDIVRQVYNHALHEFNKIPEGKGTLRQRVWQVRDDLPSLKQQWTDLKQVYSTVLQKAVERIRTNINNLGKLKSKGYDV
GSLNWKGPCEYRSFTYRQSGFELDKKSGPRDRAILRLKKVRGDTLEIPIRLHRDLPEHDAIKEVTVKKEPTGAWYASFCISTDEPVKPDVDNIDTEDTVG
LDLGVRNFIHDSEGRSIGRLDLADERDRLEREQRSLSRKQYESNNWEKQRRRVAEVHTRMSNKKRDYKHKLAYFYATKYDAVFVEDLNVKSMLEGDGNAR
NKAEVGWSDFRKILEHHCDKHGTHYVEVPAQGTTKECAKCGAETEKPLWVREHSCPACGFELERDWNAALNVKSRGLEKLGVVHSKATPVETATAVDPIT
VSASRVVEAGSPCLEEPASAGE
GSLNWKGPCEYRSFTYRQSGFELDKKSGPRDRAILRLKKVRGDTLEIPIRLHRDLPEHDAIKEVTVKKEPTGAWYASFCISTDEPVKPDVDNIDTEDTVG
LDLGVRNFIHDSEGRSIGRLDLADERDRLEREQRSLSRKQYESNNWEKQRRRVAEVHTRMSNKKRDYKHKLAYFYATKYDAVFVEDLNVKSMLEGDGNAR
NKAEVGWSDFRKILEHHCDKHGTHYVEVPAQGTTKECAKCGAETEKPLWVREHSCPACGFELERDWNAALNVKSRGLEKLGVVHSKATPVETATAVDPIT
VSASRVVEAGSPCLEEPASAGE
Blast result :
Comments
ISNhu2 is 84% (TnpB) aa similar to ISHarch10.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.