ISHaar1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOJJ01000057 | ND | Halorubrum arcis | Halorubrum arcis JCM 13916 |
DNA section
IS Length : 1590 bp
Ends
Left end : CTGAATACAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGTTTTTTATA II struct. : Yes
Right end : CTGCAAAGCGCGTCGTGGAAGCAGGAACTTCCTTCCGCAAGGAGCGAAGCCCCTGCCTCAAGGAGCCGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CAGTGAGGAAGA | TTAG | TAGAGTCGGATC | tcac |
DNA sequence
CTGAATACAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGTTTTTTATA
CACGTGTGTGTTGCAGGCCCACAGGCCCACGTAATCCGAACATATATTAAATACTAAACGTATAATATGCATACGGTGAAACGGAAGACAATCACCATTC
GAGAAGATCAAGAAGAATGGATTCAGGAGAACCACCTGAATCTCTCCTCGTTCGTCCAAGAACAACTGGATGAACTTATCGAAGAACGCGACTCATAGCT
CATGAACTACAACTACAGGTATCGCCTCACGCCGACCGATAGTCAGCGTGAGACCTTGGACTATCACCGCGACACCTGTAGGCAACTCTACAACCACGCC
CTGTACCGATTCAACCAGATTCCTGAATCAGAAGGGACGGTCAAACAGCGTGTTCGGAACATTCGTGACGAGCTTCCAAACCTCAAAGACTGGTGGGACG
CGCTTACCGACGTGTACTCGAAGGTACTTCAGCCCACCGTCATGCGTATTGCGAAGAATATCAAACGCCTCGGACAACTCAAAAAACAGGGCTACAAGGT
TGGTGAACTCCGCTGGAAGTCACCTCGGGAGTTCCGCAGTTTCACCTACAACCAGTCTGGCTTCGAACTCGACAAGAAGGGTGGTCAGACCGTGTTGTCG
CTGTCGAAACTCGCGGATATTCCTATCGAACTCCACCGACCGCTACCCGACGACGCCACAGTCAAGCAAGTCACGCTCAAAAAGGAGAAAACCAGCGAGT
GGTTCGCCATCTTCGGTATCGAAATGGACACAAAATCACCAGCGAAGTCGTCGCTGGAGAATATTGACACTGCCGAGATGGTCGGGATTGACGTGGGCAT
TCTGAAGTATGCCCACGATACAGACGGTACAGCCGTCGAATCACTCAAGCTCTCGGAGGAACGCGACAGGCTTGAACGAGAGCAGCGGAACCTCTCCCGG
AAAGAGCATGGGTCGAATAACTGGGAGAACCAACGTCGGCGTGTCGCTGAGTGCCATTTCGATATCAAGCGCAAACGGCGTGATTTCCTGCACAAACTCT
CGGCATACTACGCTCGGGAGTACGAGCTGGTCGCCGTCGAAGGCCTCGACGTGAAAGGGATGCTCGCATCGCCACGTAACAGCCGCAACACGGCATCATC
AGCGTGGAACACGTTCACCGATCTGCTCGAATACAAGTGCAAGCGTGAAGGCACGCACTTCGTGGAGGTTGACCCGGGCGGGACGACCAAAGAGTGCGCT
CAGTGTGGCGTCGAAACCGACAAGCCGCTGTGGGTACGTGAACACTCCTGTCCGGCCTGTGGCTTCGAGGCGGACAGAGATGCAAACGCAGCGTGGAACA
TTCTTTCTCGCGGACTCACCGATCTAGGAGTGGGACACTCCGAATTACCGCCTGTGGAGACTGCGCTCGCTGTGGACACTGCAGTTGTGTCTGCAAAGCG
CGTCGTGGAAGCAGGAACTTCCTTCCGCAAGGAGCGAAGCCCCTGCCTCAAGGAGCCGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC
CACGTGTGTGTTGCAGGCCCACAGGCCCACGTAATCCGAACATATATTAAATACTAAACGTATAATATGCATACGGTGAAACGGAAGACAATCACCATTC
GAGAAGATCAAGAAGAATGGATTCAGGAGAACCACCTGAATCTCTCCTCGTTCGTCCAAGAACAACTGGATGAACTTATCGAAGAACGCGACTCATAGCT
CATGAACTACAACTACAGGTATCGCCTCACGCCGACCGATAGTCAGCGTGAGACCTTGGACTATCACCGCGACACCTGTAGGCAACTCTACAACCACGCC
CTGTACCGATTCAACCAGATTCCTGAATCAGAAGGGACGGTCAAACAGCGTGTTCGGAACATTCGTGACGAGCTTCCAAACCTCAAAGACTGGTGGGACG
CGCTTACCGACGTGTACTCGAAGGTACTTCAGCCCACCGTCATGCGTATTGCGAAGAATATCAAACGCCTCGGACAACTCAAAAAACAGGGCTACAAGGT
TGGTGAACTCCGCTGGAAGTCACCTCGGGAGTTCCGCAGTTTCACCTACAACCAGTCTGGCTTCGAACTCGACAAGAAGGGTGGTCAGACCGTGTTGTCG
CTGTCGAAACTCGCGGATATTCCTATCGAACTCCACCGACCGCTACCCGACGACGCCACAGTCAAGCAAGTCACGCTCAAAAAGGAGAAAACCAGCGAGT
GGTTCGCCATCTTCGGTATCGAAATGGACACAAAATCACCAGCGAAGTCGTCGCTGGAGAATATTGACACTGCCGAGATGGTCGGGATTGACGTGGGCAT
TCTGAAGTATGCCCACGATACAGACGGTACAGCCGTCGAATCACTCAAGCTCTCGGAGGAACGCGACAGGCTTGAACGAGAGCAGCGGAACCTCTCCCGG
AAAGAGCATGGGTCGAATAACTGGGAGAACCAACGTCGGCGTGTCGCTGAGTGCCATTTCGATATCAAGCGCAAACGGCGTGATTTCCTGCACAAACTCT
CGGCATACTACGCTCGGGAGTACGAGCTGGTCGCCGTCGAAGGCCTCGACGTGAAAGGGATGCTCGCATCGCCACGTAACAGCCGCAACACGGCATCATC
AGCGTGGAACACGTTCACCGATCTGCTCGAATACAAGTGCAAGCGTGAAGGCACGCACTTCGTGGAGGTTGACCCGGGCGGGACGACCAAAGAGTGCGCT
CAGTGTGGCGTCGAAACCGACAAGCCGCTGTGGGTACGTGAACACTCCTGTCCGGCCTGTGGCTTCGAGGCGGACAGAGATGCAAACGCAGCGTGGAACA
TTCTTTCTCGCGGACTCACCGATCTAGGAGTGGGACACTCCGAATTACCGCCTGTGGAGACTGCGCTCGCTGTGGACACTGCAGTTGTGTCTGCAAAGCG
CGTCGTGGAAGCAGGAACTTCCTTCCGCAAGGAGCGAAGCCCCTGCCTCAAGGAGCCGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
132 bp | 43 aa | 167 | 298 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MHTVKRKTITIREDQEEWIQENHLNLSSFVQEQLDELIEERDS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1284 bp | 427 aa | 302 | 1585 | + | No |
AG : TnpB
ORF sequence :
MNYNYRYRLTPTDSQRETLDYHRDTCRQLYNHALYRFNQIPESEGTVKQRVRNIRDELPNLKDWWDALTDVYSKVLQPTVMRIAKNIKRLGQLKKQGYKV
GELRWKSPREFRSFTYNQSGFELDKKGGQTVLSLSKLADIPIELHRPLPDDATVKQVTLKKEKTSEWFAIFGIEMDTKSPAKSSLENIDTAEMVGIDVGI
LKYAHDTDGTAVESLKLSEERDRLEREQRNLSRKEHGSNNWENQRRRVAECHFDIKRKRRDFLHKLSAYYAREYELVAVEGLDVKGMLASPRNSRNTASS
AWNTFTDLLEYKCKREGTHFVEVDPGGTTKECAQCGVETDKPLWVREHSCPACGFEADRDANAAWNILSRGLTDLGVGHSELPPVETALAVDTAVVSAKR
VVEAGTSFRKERSPCLKEPPKAASRQG
GELRWKSPREFRSFTYNQSGFELDKKGGQTVLSLSKLADIPIELHRPLPDDATVKQVTLKKEKTSEWFAIFGIEMDTKSPAKSSLENIDTAEMVGIDVGI
LKYAHDTDGTAVESLKLSEERDRLEREQRNLSRKEHGSNNWENQRRRVAECHFDIKRKRRDFLHKLSAYYAREYELVAVEGLDVKGMLASPRNSRNTASS
AWNTFTDLLEYKCKREGTHFVEVDPGGTTKECAQCGVETDKPLWVREHSCPACGFEADRDANAAWNILSRGLTDLGVGHSELPPVETALAVDTAVVSAKR
VVEAGTSFRKERSPCLKEPPKAASRQG
Blast result :
Comments
ISHaar1 is 91% (TnpB) aa similar to ISNph20. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.