ISHaar1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOJJ01000057 ND Halorubrum arcis
Halorubrum arcis JCM 13916
DNA section
IS Length : 1590 bp

Ends


Left end : CTGAATACAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGTTTTTTATA II struct. : Yes
Right end : CTGCAAAGCGCGTCGTGGAAGCAGGAACTTCCTTCCGCAAGGAGCGAAGCCCCTGCCTCAAGGAGCCGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CAGTGAGGAAGATTAGTAGAGTCGGATCtcac

DNA sequence

CTGAATACAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGTTTTTTATA
CACGTGTGTGTTGCAGGCCCACAGGCCCACGTAATCCGAACATATATTAAATACTAAACGTATAATATGCATACGGTGAAACGGAAGACAATCACCATTC
GAGAAGATCAAGAAGAATGGATTCAGGAGAACCACCTGAATCTCTCCTCGTTCGTCCAAGAACAACTGGATGAACTTATCGAAGAACGCGACTCATAGCT
CATGAACTACAACTACAGGTATCGCCTCACGCCGACCGATAGTCAGCGTGAGACCTTGGACTATCACCGCGACACCTGTAGGCAACTCTACAACCACGCC
CTGTACCGATTCAACCAGATTCCTGAATCAGAAGGGACGGTCAAACAGCGTGTTCGGAACATTCGTGACGAGCTTCCAAACCTCAAAGACTGGTGGGACG
CGCTTACCGACGTGTACTCGAAGGTACTTCAGCCCACCGTCATGCGTATTGCGAAGAATATCAAACGCCTCGGACAACTCAAAAAACAGGGCTACAAGGT
TGGTGAACTCCGCTGGAAGTCACCTCGGGAGTTCCGCAGTTTCACCTACAACCAGTCTGGCTTCGAACTCGACAAGAAGGGTGGTCAGACCGTGTTGTCG
CTGTCGAAACTCGCGGATATTCCTATCGAACTCCACCGACCGCTACCCGACGACGCCACAGTCAAGCAAGTCACGCTCAAAAAGGAGAAAACCAGCGAGT
GGTTCGCCATCTTCGGTATCGAAATGGACACAAAATCACCAGCGAAGTCGTCGCTGGAGAATATTGACACTGCCGAGATGGTCGGGATTGACGTGGGCAT
TCTGAAGTATGCCCACGATACAGACGGTACAGCCGTCGAATCACTCAAGCTCTCGGAGGAACGCGACAGGCTTGAACGAGAGCAGCGGAACCTCTCCCGG
AAAGAGCATGGGTCGAATAACTGGGAGAACCAACGTCGGCGTGTCGCTGAGTGCCATTTCGATATCAAGCGCAAACGGCGTGATTTCCTGCACAAACTCT
CGGCATACTACGCTCGGGAGTACGAGCTGGTCGCCGTCGAAGGCCTCGACGTGAAAGGGATGCTCGCATCGCCACGTAACAGCCGCAACACGGCATCATC
AGCGTGGAACACGTTCACCGATCTGCTCGAATACAAGTGCAAGCGTGAAGGCACGCACTTCGTGGAGGTTGACCCGGGCGGGACGACCAAAGAGTGCGCT
CAGTGTGGCGTCGAAACCGACAAGCCGCTGTGGGTACGTGAACACTCCTGTCCGGCCTGTGGCTTCGAGGCGGACAGAGATGCAAACGCAGCGTGGAACA
TTCTTTCTCGCGGACTCACCGATCTAGGAGTGGGACACTCCGAATTACCGCCTGTGGAGACTGCGCTCGCTGTGGACACTGCAGTTGTGTCTGCAAAGCG
CGTCGTGGAAGCAGGAACTTCCTTCCGCAAGGAGCGAAGCCCCTGCCTCAAGGAGCCGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
132 bp43 aa167298+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MHTVKRKTITIREDQEEWIQENHLNLSSFVQEQLDELIEERDS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1284 bp427 aa3021585+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MNYNYRYRLTPTDSQRETLDYHRDTCRQLYNHALYRFNQIPESEGTVKQRVRNIRDELPNLKDWWDALTDVYSKVLQPTVMRIAKNIKRLGQLKKQGYKV
GELRWKSPREFRSFTYNQSGFELDKKGGQTVLSLSKLADIPIELHRPLPDDATVKQVTLKKEKTSEWFAIFGIEMDTKSPAKSSLENIDTAEMVGIDVGI
LKYAHDTDGTAVESLKLSEERDRLEREQRNLSRKEHGSNNWENQRRRVAECHFDIKRKRRDFLHKLSAYYAREYELVAVEGLDVKGMLASPRNSRNTASS
AWNTFTDLLEYKCKREGTHFVEVDPGGTTKECAQCGVETDKPLWVREHSCPACGFEADRDANAAWNILSRGLTDLGVGHSELPPVETALAVDTAVVSAKR
VVEAGTSFRKERSPCLKEPPKAASRQG

 

Blast result :
Comments
ISHaar1 is 91% (TnpB) aa similar to ISNph20. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.