ISNin1
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOHZ01000031 | ND | Natronolimnobius innermongolicus | Natronolimnobius innermongolicus JCM 12255 |
DNA section
IS Length : 1902 bp
Ends
Left end : ACGAAAAACAGCGCGAGTTCCCCGCCCTTCCGAAAACCTGCGGTTTTCGGCTTTCGCAAATCTTCGATTTGCGTCAACACCGTGGGCGGGGGTGAAGCGC II struct. : No
Right end : GCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGCGCACGGCTGAGGGAATTAGAAAAGCCTCGGGCCACCGCGCCCGAGGTTGTTTAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTCGAATCGACG | TCTAA | TTTTCGGCGGGT |
DNA sequence
ACGAAAAACAGCGCGAGTTCCCCGCCCTTCCGAAAACCTGCGGTTTTCGGCTTTCGCAAATCTTCGATTTGCGTCAACACCGTGGGCGGGGGTGAAGCGC
GTCACTCCAGCGCGTGTTCCGTCTCTTCTGTATACCGCTCAACCACTTCCTCCGATACCGCACCTGTCGTTCCCACGTAGTACCCAACCTTCCAGAATCC
ACCGCCCCAGAAATACGACTCCCGAATCTCGGGATACCGCTCCAGCAAGTGCTTACCCGAGTACGACTTGAACTGCCGGGCGAGGTCGGCTGGACTGTGT
TTTGGGTCGCACTGGACGAACAGGTGTACGTGGTCGTCTGCAATCTCCAACGCCAGAATTTTATGCCCGAAGTGGTCGGAGGTCTCACCAAACAACTCTC
GCACATCGTCTTCAACCACGTTGAGAATCGGGTGGCGGTACTTGGGACACCAGACAAAATAACACTTACAGGAACTAACCGAATGTGCATGACTGCGGTA
CTCTTCCATCCCTAATCCCTATATTTATGATGAGTTAGAACGAGTGTCAAAGCATGGGTGAAGAAGCCACGAAGACGATCCGGACGCGCCTCCACATAGC
GTCTGGTGAACGATCGTGGCTTCACAATGCCCGCCTCGCCTCACGCGAAATATTCAACCAAACCATCCGCCTCAAACAACAAGGGTACAATCGCACCGAG
ATACAGAAGGAGGTTGACCGCGACGACTTCCTACGGAACAACAAGTGCGCGGTCGTCGGCAAAGCCCTCCAAACATGGGACTCCTACCAATCACTCAAAG
ACTGGTGGGAGAACCAAGACGAGCCTGACGGAGGGAAGCCGACTCCGCCGAGTACGGACAAATCTGGTGCGTATCCGCTTGTGATGGCGCACACAGAAGG
GTACCGCCTCACCGTAGATGACGACACGAACCGCGTCCAGTTCCGCATCAGCCCGAAACCCTACAAGAAGGTGAAAGGACACCTGCGCGGCGAACCGGAC
GCAATGGACGAACTGCGAGACGCCCTCACGTCTGAAGAAGTGGATATTGGGCAGGCCGAACTCCTGTACCGCGATGGCGTGTACTACCTACACGTCACGG
TCACACGCGAGTTCGACGTCCCCGAACCTGACACCGCCGATACTGTGATTGGCGTGGACATCAACGAGCGCAACGTTGCTTTCACCGCCCTCGACCGCGA
CACGATGCAGACGAAAGGGACACTCGTCCTCGACTACGGACGAGTCAAGCAGGAACGCCAACGCTACCACACTATCACCACTCGCTGTCAAGAACACGGC
AAAACGAGCATCCACCACAGACTCGGTGACAAGGAGGAGCGGTTCACCGAGTGGGTGTTGCATCGGCTTTCCCGTGCTGTCGTGGAGTTTGCAGAGCAGT
TCTCGAACCCGGTTATCGTGTTCGAGAATATGAGCGGTATCCGCGACGAAATTAAGTATGGATCGTATATGAACCGTCGGTTGCACAAACTGCCGTTCCA
CAAGTTCGAGAAGTTCGTCTCGTACAAGGCGACGTGGCGAGAGATTCCTACGGATACGGTAGACGCGTACTACAACTCGAAGACGTGTTCGTGCTGTGGT
GAACGTGGCAGTCGGCAGGGGCGGCGGTTTCGGTGTACGAACGACGAGTGTGATGTGGTGCAAGACCACGCTGACCGGAATGCGTCGGTGAACATCGCGT
GGCGCGAGAAGGCGAAGCTTGACGGTAACGAATCGAATTACCGGACTCACAAAACCCAACCTCAGGTTCGGTTGGTGCGTTTGTCCGGGTCGGGGCGTGT
AAGCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGCGCACGGCTGAGGGAATTAGAAAAGCCTCGGGCCACCGCGCCCGAGGTTGTTT
AC
GTCACTCCAGCGCGTGTTCCGTCTCTTCTGTATACCGCTCAACCACTTCCTCCGATACCGCACCTGTCGTTCCCACGTAGTACCCAACCTTCCAGAATCC
ACCGCCCCAGAAATACGACTCCCGAATCTCGGGATACCGCTCCAGCAAGTGCTTACCCGAGTACGACTTGAACTGCCGGGCGAGGTCGGCTGGACTGTGT
TTTGGGTCGCACTGGACGAACAGGTGTACGTGGTCGTCTGCAATCTCCAACGCCAGAATTTTATGCCCGAAGTGGTCGGAGGTCTCACCAAACAACTCTC
GCACATCGTCTTCAACCACGTTGAGAATCGGGTGGCGGTACTTGGGACACCAGACAAAATAACACTTACAGGAACTAACCGAATGTGCATGACTGCGGTA
CTCTTCCATCCCTAATCCCTATATTTATGATGAGTTAGAACGAGTGTCAAAGCATGGGTGAAGAAGCCACGAAGACGATCCGGACGCGCCTCCACATAGC
GTCTGGTGAACGATCGTGGCTTCACAATGCCCGCCTCGCCTCACGCGAAATATTCAACCAAACCATCCGCCTCAAACAACAAGGGTACAATCGCACCGAG
ATACAGAAGGAGGTTGACCGCGACGACTTCCTACGGAACAACAAGTGCGCGGTCGTCGGCAAAGCCCTCCAAACATGGGACTCCTACCAATCACTCAAAG
ACTGGTGGGAGAACCAAGACGAGCCTGACGGAGGGAAGCCGACTCCGCCGAGTACGGACAAATCTGGTGCGTATCCGCTTGTGATGGCGCACACAGAAGG
GTACCGCCTCACCGTAGATGACGACACGAACCGCGTCCAGTTCCGCATCAGCCCGAAACCCTACAAGAAGGTGAAAGGACACCTGCGCGGCGAACCGGAC
GCAATGGACGAACTGCGAGACGCCCTCACGTCTGAAGAAGTGGATATTGGGCAGGCCGAACTCCTGTACCGCGATGGCGTGTACTACCTACACGTCACGG
TCACACGCGAGTTCGACGTCCCCGAACCTGACACCGCCGATACTGTGATTGGCGTGGACATCAACGAGCGCAACGTTGCTTTCACCGCCCTCGACCGCGA
CACGATGCAGACGAAAGGGACACTCGTCCTCGACTACGGACGAGTCAAGCAGGAACGCCAACGCTACCACACTATCACCACTCGCTGTCAAGAACACGGC
AAAACGAGCATCCACCACAGACTCGGTGACAAGGAGGAGCGGTTCACCGAGTGGGTGTTGCATCGGCTTTCCCGTGCTGTCGTGGAGTTTGCAGAGCAGT
TCTCGAACCCGGTTATCGTGTTCGAGAATATGAGCGGTATCCGCGACGAAATTAAGTATGGATCGTATATGAACCGTCGGTTGCACAAACTGCCGTTCCA
CAAGTTCGAGAAGTTCGTCTCGTACAAGGCGACGTGGCGAGAGATTCCTACGGATACGGTAGACGCGTACTACAACTCGAAGACGTGTTCGTGCTGTGGT
GAACGTGGCAGTCGGCAGGGGCGGCGGTTTCGGTGTACGAACGACGAGTGTGATGTGGTGCAAGACCACGCTGACCGGAATGCGTCGGTGAACATCGCGT
GGCGCGAGAAGGCGAAGCTTGACGGTAACGAATCGAATTACCGGACTCACAAAACCCAACCTCAGGTTCGGTTGGTGCGTTTGTCCGGGTCGGGGCGTGT
AAGCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGCGCACGGCTGAGGGAATTAGAAAAGCCTCGGGCCACCGCGCCCGAGGTTGTTT
AC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
408 bp | 135 aa | 509 | 102 | - | No |
Chemistry : Y1
ORF sequence :
MEEYRSHAHSVSSCKCYFVWCPKYRHPILNVVEDDVRELFGETSDHFGHKILALEIADDHVHLFVQCDPKHSPADLARQFKSYSGKHLLERYPEIRESYF
WGGGFWKVGYYVGTTGAVSEEVVERYTEETEHALE
WGGGFWKVGYYVGTTGAVSEEVVERYTEETEHALE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 554 | 1858 | + | No |
AG : TnpB
ORF sequence :
MGEEATKTIRTRLHIASGERSWLHNARLASREIFNQTIRLKQQGYNRTEIQKEVDRDDFLRNNKCAVVGKALQTWDSYQSLKDWWENQDEPDGGKPTPPS
TDKSGAYPLVMAHTEGYRLTVDDDTNRVQFRISPKPYKKVKGHLRGEPDAMDELRDALTSEEVDIGQAELLYRDGVYYLHVTVTREFDVPEPDTADTVIG
VDINERNVAFTALDRDTMQTKGTLVLDYGRVKQERQRYHTITTRCQEHGKTSIHHRLGDKEERFTEWVLHRLSRAVVEFAEQFSNPVIVFENMSGIRDEI
KYGSYMNRRLHKLPFHKFEKFVSYKATWREIPTDTVDAYYNSKTCSCCGERGSRQGRRFRCTNDECDVVQDHADRNASVNIAWREKAKLDGNESNYRTHK
TQPQVRLVRLSGSGRVSRPTSSRSLAEQGVLAHG
TDKSGAYPLVMAHTEGYRLTVDDDTNRVQFRISPKPYKKVKGHLRGEPDAMDELRDALTSEEVDIGQAELLYRDGVYYLHVTVTREFDVPEPDTADTVIG
VDINERNVAFTALDRDTMQTKGTLVLDYGRVKQERQRYHTITTRCQEHGKTSIHHRLGDKEERFTEWVLHRLSRAVVEFAEQFSNPVIVFENMSGIRDEI
KYGSYMNRRLHKLPFHKFEKFVSYKATWREIPTDTVDAYYNSKTCSCCGERGSRQGRRFRCTNDECDVVQDHADRNASVNIAWREKAKLDGNESNYRTHK
TQPQVRLVRLSGSGRVSRPTSSRSLAEQGVLAHG
Blast result :
Comments
ISNin1 is 96% aa similar to ISH34 (TnpA : the transposase) and 97% (TnpB) aa similar to ISNph6.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.