ISHwa29
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM180088 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi DSM 16790 |
DNA section
IS Length : 1670 bp
Ends
Left end : CTTTAATCAGCGAGAGAATCCCGCCGTTTACGGCGGGCGTGAATCGCGTCACTTGACTACGCAAACTACGAGCGACAGCCCGCTGAATACCCCACGCCAA II struct. : No
Right end : GACCGGTGGCACGCATACGTCTTGAAACCTCAATCCAGCACCTTGCTGGTATTCCACCCGTGGTGGAAGCCCCGGCGTTTACGCCGGGCGAGGATGTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTAGACATAA | CTAT | GAGTCCCCGA |
DNA sequence
CTTTAATCAGCGAGAGAATCCCGCCGTTTACGGCGGGCGTGAATCGCGTCACTTGACTACGCAAACTACGAGCGACAGCCCGCTGAATACCCCACGCCAA
TACAAAACTTTTATAGTACGATAAAACATACTCTAAAACAGATGCGGGTTGACATCGCCATCGAACGTGGAAGCGATCTCCATGAGCGAGTGAAAGAGTA
CTCCCGCGAGAACGGCCTGCGAATGGACTTCGCATACGCCGAACTCGTCGAACAAGGACTCGACGCTACTGAAGAATGAGTGAGGAGTGCAAGACGCTCG
AAGCGTATCTTGCCCCACCCACTCAGCACAAACAGCGCAAGCTCCGCGACGAACACGACCGATACGAAACACTGCTTCGTCGCAGTTTCAACGACAAGTG
CGACACGATGACTGCCGTCAACGAGGTTGTCAGCGGTGAAGACCTCAACTGGCACTCCAAAAACGCACTCAAACAATACGTCCCCCACCTTCTCGATGAA
GACACATATGATGCGAAGCAACTCGCAGACACCCATCCAATCCGCTACGCCAACACCGCAGCCGTTTTCGACCACGATGAAGCCCGTCGCCACGAAATCT
GCTGGGAGGTTCCGCTCCCCGGTCGCGGGACGAACTTCTGGATACCACTCCAGTTGAATCCCGAGCAAGAATACTGGTGGCACTCTCTGATTGACGACAA
AGACGACAGCGTGTGGGCAGGCGAACTCCGCCTACAACTCGACGGTGACAGATGGGTATTGCACGTCACCGCAAACTACGAAGTCGAAGCAGACCACAAA
TGTTCGTGTGACAGTGACAATGTGACACCAGTCGGGTTCGACGTTGGTGAATCCAAACTCTTGGTGGGCTGTGCCCTCCGAGACGACACGCCTGTTGACC
CGTTGTTCGTGGATGGAGGTCGTGTCCGACACCTCCGACAGAAACAAGCCAGTGCTGAAGATCGGTTGAAATCACGATATGCGTCGAACCTCTTGGACAA
TCTCGTGTGGGGTCGGTGGCAAGACGCCATCGAAGACGAAATCGAGAAGGCCTCGGCGCGAGCAGTCGAATACGCATCCCAGTTCGAGAACCCAGTCATC
GTCCTCGAATACCTCGACGGTATCACGGACGAAGATATTGGGAAGTACTGGAATCGACGCCTCGGCAAATGGTTGTTCTCCCGGTTGCAGTCACGTATCG
AGGATAAGGCAGCGGAGCGCGGTATTCCTGTGGAATACGTGTATCCGCATCACACGTCGAAAACGTGCAATGCGTATCAACACGTTGGGTACAGGCCGCA
TCAGGGCACGTTCAATTGTACGAACGAGTCGTGCTGGGTCGGGGAGTACCAAGCGGATCTGAACGCAGCAGCGAACATAGCCAATCGGCTAAATCCGTGG
GGAGAGAGCCTGCCTTGGAAATCGGCAGGCGATGACTCGCCACAGAGCGGGGGCCAGTGGCAGGCCCACAAAGACACGTCACTGAGCGAGGGACTCTCGT
CCGAGAGGCGGACTTCCGATGACAAGGTTTCGTCTAGCTCACCAGCAGTGGGAGCGGGGACGGAGCCGGAGACCGGTGGCACGCATACGTCTTGAAACCT
CAATCCAGCACCTTGCTGGTATTCCACCCGTGGTGGAAGCCCCGGCGTTTACGCCGGGCGAGGATGTCAC
TACAAAACTTTTATAGTACGATAAAACATACTCTAAAACAGATGCGGGTTGACATCGCCATCGAACGTGGAAGCGATCTCCATGAGCGAGTGAAAGAGTA
CTCCCGCGAGAACGGCCTGCGAATGGACTTCGCATACGCCGAACTCGTCGAACAAGGACTCGACGCTACTGAAGAATGAGTGAGGAGTGCAAGACGCTCG
AAGCGTATCTTGCCCCACCCACTCAGCACAAACAGCGCAAGCTCCGCGACGAACACGACCGATACGAAACACTGCTTCGTCGCAGTTTCAACGACAAGTG
CGACACGATGACTGCCGTCAACGAGGTTGTCAGCGGTGAAGACCTCAACTGGCACTCCAAAAACGCACTCAAACAATACGTCCCCCACCTTCTCGATGAA
GACACATATGATGCGAAGCAACTCGCAGACACCCATCCAATCCGCTACGCCAACACCGCAGCCGTTTTCGACCACGATGAAGCCCGTCGCCACGAAATCT
GCTGGGAGGTTCCGCTCCCCGGTCGCGGGACGAACTTCTGGATACCACTCCAGTTGAATCCCGAGCAAGAATACTGGTGGCACTCTCTGATTGACGACAA
AGACGACAGCGTGTGGGCAGGCGAACTCCGCCTACAACTCGACGGTGACAGATGGGTATTGCACGTCACCGCAAACTACGAAGTCGAAGCAGACCACAAA
TGTTCGTGTGACAGTGACAATGTGACACCAGTCGGGTTCGACGTTGGTGAATCCAAACTCTTGGTGGGCTGTGCCCTCCGAGACGACACGCCTGTTGACC
CGTTGTTCGTGGATGGAGGTCGTGTCCGACACCTCCGACAGAAACAAGCCAGTGCTGAAGATCGGTTGAAATCACGATATGCGTCGAACCTCTTGGACAA
TCTCGTGTGGGGTCGGTGGCAAGACGCCATCGAAGACGAAATCGAGAAGGCCTCGGCGCGAGCAGTCGAATACGCATCCCAGTTCGAGAACCCAGTCATC
GTCCTCGAATACCTCGACGGTATCACGGACGAAGATATTGGGAAGTACTGGAATCGACGCCTCGGCAAATGGTTGTTCTCCCGGTTGCAGTCACGTATCG
AGGATAAGGCAGCGGAGCGCGGTATTCCTGTGGAATACGTGTATCCGCATCACACGTCGAAAACGTGCAATGCGTATCAACACGTTGGGTACAGGCCGCA
TCAGGGCACGTTCAATTGTACGAACGAGTCGTGCTGGGTCGGGGAGTACCAAGCGGATCTGAACGCAGCAGCGAACATAGCCAATCGGCTAAATCCGTGG
GGAGAGAGCCTGCCTTGGAAATCGGCAGGCGATGACTCGCCACAGAGCGGGGGCCAGTGGCAGGCCCACAAAGACACGTCACTGAGCGAGGGACTCTCGT
CCGAGAGGCGGACTTCCGATGACAAGGTTTCGTCTAGCTCACCAGCAGTGGGAGCGGGGACGGAGCCGGAGACCGGTGGCACGCATACGTCTTGAAACCT
CAATCCAGCACCTTGCTGGTATTCCACCCGTGGTGGAAGCCCCGGCGTTTACGCCGGGCGAGGATGTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1320 bp | 439 aa | 276 | 1595 | + | No |
AG : TnpB
ORF sequence :
MSEECKTLEAYLAPPTQHKQRKLRDEHDRYETLLRRSFNDKCDTMTAVNEVVSGEDLNWHSKNALKQYVPHLLDEDTYDAKQLADTHPIRYANTAAVFDH
DEARRHEICWEVPLPGRGTNFWIPLQLNPEQEYWWHSLIDDKDDSVWAGELRLQLDGDRWVLHVTANYEVEADHKCSCDSDNVTPVGFDVGESKLLVGCA
LRDDTPVDPLFVDGGRVRHLRQKQASAEDRLKSRYASNLLDNLVWGRWQDAIEDEIEKASARAVEYASQFENPVIVLEYLDGITDEDIGKYWNRRLGKWL
FSRLQSRIEDKAAERGIPVEYVYPHHTSKTCNAYQHVGYRPHQGTFNCTNESCWVGEYQADLNAAANIANRLNPWGESLPWKSAGDDSPQSGGQWQAHKD
TSLSEGLSSERRTSDDKVSSSSPAVGAGTEPETGGTHTS
DEARRHEICWEVPLPGRGTNFWIPLQLNPEQEYWWHSLIDDKDDSVWAGELRLQLDGDRWVLHVTANYEVEADHKCSCDSDNVTPVGFDVGESKLLVGCA
LRDDTPVDPLFVDGGRVRHLRQKQASAEDRLKSRYASNLLDNLVWGRWQDAIEDEIEKASARAVEYASQFENPVIVLEYLDGITDEDIGKYWNRRLGKWL
FSRLQSRIEDKAAERGIPVEYVYPHHTSKTCNAYQHVGYRPHQGTFNCTNESCWVGEYQADLNAAANIANRLNPWGESLPWKSAGDDSPQSGGQWQAHKD
TSLSEGLSSERRTSDDKVSSSSPAVGAGTEPETGGTHTS
Blast result :
Comments
ISHwa29 is 63% (TnpB) aa similar to ISNamo26.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169