ISHwa29

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM180088 ND Haloquadratum walsbyi
Haloquadratum walsbyi DSM 16790
DNA section
IS Length : 1670 bp

Ends


Left end : CTTTAATCAGCGAGAGAATCCCGCCGTTTACGGCGGGCGTGAATCGCGTCACTTGACTACGCAAACTACGAGCGACAGCCCGCTGAATACCCCACGCCAA II struct. : No
Right end : GACCGGTGGCACGCATACGTCTTGAAACCTCAATCCAGCACCTTGCTGGTATTCCACCCGTGGTGGAAGCCCCGGCGTTTACGCCGGGCGAGGATGTCAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TTAGACATAACTATGAGTCCCCGA

DNA sequence

CTTTAATCAGCGAGAGAATCCCGCCGTTTACGGCGGGCGTGAATCGCGTCACTTGACTACGCAAACTACGAGCGACAGCCCGCTGAATACCCCACGCCAA
TACAAAACTTTTATAGTACGATAAAACATACTCTAAAACAGATGCGGGTTGACATCGCCATCGAACGTGGAAGCGATCTCCATGAGCGAGTGAAAGAGTA
CTCCCGCGAGAACGGCCTGCGAATGGACTTCGCATACGCCGAACTCGTCGAACAAGGACTCGACGCTACTGAAGAATGAGTGAGGAGTGCAAGACGCTCG
AAGCGTATCTTGCCCCACCCACTCAGCACAAACAGCGCAAGCTCCGCGACGAACACGACCGATACGAAACACTGCTTCGTCGCAGTTTCAACGACAAGTG
CGACACGATGACTGCCGTCAACGAGGTTGTCAGCGGTGAAGACCTCAACTGGCACTCCAAAAACGCACTCAAACAATACGTCCCCCACCTTCTCGATGAA
GACACATATGATGCGAAGCAACTCGCAGACACCCATCCAATCCGCTACGCCAACACCGCAGCCGTTTTCGACCACGATGAAGCCCGTCGCCACGAAATCT
GCTGGGAGGTTCCGCTCCCCGGTCGCGGGACGAACTTCTGGATACCACTCCAGTTGAATCCCGAGCAAGAATACTGGTGGCACTCTCTGATTGACGACAA
AGACGACAGCGTGTGGGCAGGCGAACTCCGCCTACAACTCGACGGTGACAGATGGGTATTGCACGTCACCGCAAACTACGAAGTCGAAGCAGACCACAAA
TGTTCGTGTGACAGTGACAATGTGACACCAGTCGGGTTCGACGTTGGTGAATCCAAACTCTTGGTGGGCTGTGCCCTCCGAGACGACACGCCTGTTGACC
CGTTGTTCGTGGATGGAGGTCGTGTCCGACACCTCCGACAGAAACAAGCCAGTGCTGAAGATCGGTTGAAATCACGATATGCGTCGAACCTCTTGGACAA
TCTCGTGTGGGGTCGGTGGCAAGACGCCATCGAAGACGAAATCGAGAAGGCCTCGGCGCGAGCAGTCGAATACGCATCCCAGTTCGAGAACCCAGTCATC
GTCCTCGAATACCTCGACGGTATCACGGACGAAGATATTGGGAAGTACTGGAATCGACGCCTCGGCAAATGGTTGTTCTCCCGGTTGCAGTCACGTATCG
AGGATAAGGCAGCGGAGCGCGGTATTCCTGTGGAATACGTGTATCCGCATCACACGTCGAAAACGTGCAATGCGTATCAACACGTTGGGTACAGGCCGCA
TCAGGGCACGTTCAATTGTACGAACGAGTCGTGCTGGGTCGGGGAGTACCAAGCGGATCTGAACGCAGCAGCGAACATAGCCAATCGGCTAAATCCGTGG
GGAGAGAGCCTGCCTTGGAAATCGGCAGGCGATGACTCGCCACAGAGCGGGGGCCAGTGGCAGGCCCACAAAGACACGTCACTGAGCGAGGGACTCTCGT
CCGAGAGGCGGACTTCCGATGACAAGGTTTCGTCTAGCTCACCAGCAGTGGGAGCGGGGACGGAGCCGGAGACCGGTGGCACGCATACGTCTTGAAACCT
CAATCCAGCACCTTGCTGGTATTCCACCCGTGGTGGAAGCCCCGGCGTTTACGCCGGGCGAGGATGTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1320 bp439 aa2761595+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSEECKTLEAYLAPPTQHKQRKLRDEHDRYETLLRRSFNDKCDTMTAVNEVVSGEDLNWHSKNALKQYVPHLLDEDTYDAKQLADTHPIRYANTAAVFDH
DEARRHEICWEVPLPGRGTNFWIPLQLNPEQEYWWHSLIDDKDDSVWAGELRLQLDGDRWVLHVTANYEVEADHKCSCDSDNVTPVGFDVGESKLLVGCA
LRDDTPVDPLFVDGGRVRHLRQKQASAEDRLKSRYASNLLDNLVWGRWQDAIEDEIEKASARAVEYASQFENPVIVLEYLDGITDEDIGKYWNRRLGKWL
FSRLQSRIEDKAAERGIPVEYVYPHHTSKTCNAYQHVGYRPHQGTFNCTNESCWVGEYQADLNAAANIANRLNPWGESLPWKSAGDDSPQSGGQWQAHKD
TSLSEGLSSERRTSDDKVSSSSPAVGAGTEPETGGTHTS

 

Blast result :
Comments
ISHwa29 is 63% (TnpB) aa similar to ISNamo26.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169