ISHwa27
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM180088 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi DSM 16790 |
DNA section
IS Length : 1488 bp
Ends
Left end : CGCTTCAACACTTGCGAGGTGGAGTCCCCTTCCTCAAGGAGCGAACGGAGTGAGCGAGTAGGGAGGGGAGGAAACCGTCTACGAATATCAACTAAAATCA II struct. : Yes
Right end : AAACGAGGATTCGGGTTAGAGGAAGAGACCACGGACAAGCCCCACCCTCTATCGACCGAATCGGTTTATCCGATGAGGGAAGTAGGGTGGGGTAGTTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGATAACATA | TTAT | CTACCTGTAA | TGac |
DNA sequence
CGCTTCAACACTTGCGAGGTGGAGTCCCCTTCCTCAAGGAGCGAACGGAGTGAGCGAGTAGGGAGGGGAGGAAACCGTCTACGAATATCAACTAAAATCA
TACAATACAAAACAACCGAACTTTCAATAATTACTATTATTTCTATGAAACTACGATGGCATCAGATACTGAGTACTACCGTCGAACCGCAATCACGCGA
CTCGACGGACTCTCCCATCAAGACCACGACCTCCTCAACGCTACGGTGGAAGAGTGGCTTGACGGATGCAACATCGCATCCAACCTAGCGTGGAAGAACG
AACATACTCAGTCTGGTGTCAGAAGTGTTGCTAAAGACGCAGTACGGAGTGATACAGGATTGAACAGTCAGCACTCGATTCTCGCCTGTCACGAGGTTTC
CAGCAGCATCCAATCCTGCATCGAACGCCGAAAGAACGGTGAAAAGGCAACACAACCACACTTCACTTTGAAGTCAATAACGTACGATAGACGAACGCTC
ACCGTGTGCCCAGAAAAAGAACAGGTGTCGCTTACCGTACTTGATGACCACTCTCGTGTGAGAGCATACCTCACACTTCCAAGCAATGAAGACGGCTATC
AGTATCAATACCTAGACGATGAAGACTGGGAATACACAGAGAGTACCCTGCACTATCGAGACGGTGAGTGGTACTTGCATCTCGGCTATCGCAAGGAGAA
GCCTGAGTTGGACCAGCGGGTTGGGTCAACGACACAGAACGGAACGGTTCTGGGTGTTGACCTTGGTGTCAACCAGATAGCTGTGACTAGTACGGCTCGC
TTCTTTAGTGCAGGCAAACTCAACCACGCTCGGAGAGAGTTTGAGAGAACTCGTGGCAACCTACAGGAATGTGGAACGCAGTCAGCACACCGCACTTTGC
AGGAGGTGAGTAGTCGGGAAGATGAATTCGTGAAGCACATCCTACACTCTGTGGCGAACGGAATTGTTCAGGAAGCTATTGAATACGACTGTGACGGAAT
TATCTTCGAGAAGCTGGACGGTATTCGAAAAGAGCTTCCAGAAGCTGACTGGCATTCGATGTGGGCATTCCGTAAACTCAAGAAATTTGTTGAGTACAAA
GCGGAGGAGCGTGGATTGTTTGTGGATACAGTCAATCCGAAGAACACGTCGAAGCGATGCAACGAGTGCGAATGTGTTCGGGACGGTAATCGTCACGGTG
ACGAGTTTGAGTGTCGTCGCTGCGGGAAGCAGAATCACGCCGACTACAACGCAGCGAAGAACGTGGCGGAGTTGTATCTCCTACGAGGCCATCAGCCGTC
TCGTGGGAGGAGCCTCAGTCAATATGCCCTGAAGTCAGGGTCAAGGACTCCGAGTTAGAGCATACAGCTCTCACCCAGCCTTGCTGTGAAACGAGGATTC
GGGTTAGAGGAAGAGACCACGGACAAGCCCCACCCTCTATCGACCGAATCGGTTTATCCGATGAGGGAAGTAGGGTGGGGTAGTTGAC
TACAATACAAAACAACCGAACTTTCAATAATTACTATTATTTCTATGAAACTACGATGGCATCAGATACTGAGTACTACCGTCGAACCGCAATCACGCGA
CTCGACGGACTCTCCCATCAAGACCACGACCTCCTCAACGCTACGGTGGAAGAGTGGCTTGACGGATGCAACATCGCATCCAACCTAGCGTGGAAGAACG
AACATACTCAGTCTGGTGTCAGAAGTGTTGCTAAAGACGCAGTACGGAGTGATACAGGATTGAACAGTCAGCACTCGATTCTCGCCTGTCACGAGGTTTC
CAGCAGCATCCAATCCTGCATCGAACGCCGAAAGAACGGTGAAAAGGCAACACAACCACACTTCACTTTGAAGTCAATAACGTACGATAGACGAACGCTC
ACCGTGTGCCCAGAAAAAGAACAGGTGTCGCTTACCGTACTTGATGACCACTCTCGTGTGAGAGCATACCTCACACTTCCAAGCAATGAAGACGGCTATC
AGTATCAATACCTAGACGATGAAGACTGGGAATACACAGAGAGTACCCTGCACTATCGAGACGGTGAGTGGTACTTGCATCTCGGCTATCGCAAGGAGAA
GCCTGAGTTGGACCAGCGGGTTGGGTCAACGACACAGAACGGAACGGTTCTGGGTGTTGACCTTGGTGTCAACCAGATAGCTGTGACTAGTACGGCTCGC
TTCTTTAGTGCAGGCAAACTCAACCACGCTCGGAGAGAGTTTGAGAGAACTCGTGGCAACCTACAGGAATGTGGAACGCAGTCAGCACACCGCACTTTGC
AGGAGGTGAGTAGTCGGGAAGATGAATTCGTGAAGCACATCCTACACTCTGTGGCGAACGGAATTGTTCAGGAAGCTATTGAATACGACTGTGACGGAAT
TATCTTCGAGAAGCTGGACGGTATTCGAAAAGAGCTTCCAGAAGCTGACTGGCATTCGATGTGGGCATTCCGTAAACTCAAGAAATTTGTTGAGTACAAA
GCGGAGGAGCGTGGATTGTTTGTGGATACAGTCAATCCGAAGAACACGTCGAAGCGATGCAACGAGTGCGAATGTGTTCGGGACGGTAATCGTCACGGTG
ACGAGTTTGAGTGTCGTCGCTGCGGGAAGCAGAATCACGCCGACTACAACGCAGCGAAGAACGTGGCGGAGTTGTATCTCCTACGAGGCCATCAGCCGTC
TCGTGGGAGGAGCCTCAGTCAATATGCCCTGAAGTCAGGGTCAAGGACTCCGAGTTAGAGCATACAGCTCTCACCCAGCCTTGCTGTGAAACGAGGATTC
GGGTTAGAGGAAGAGACCACGGACAAGCCCCACCCTCTATCGACCGAATCGGTTTATCCGATGAGGGAAGTAGGGTGGGGTAGTTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1203 bp | 400 aa | 156 | 1358 | + | No |
AG : TnpB
ORF sequence :
MASDTEYYRRTAITRLDGLSHQDHDLLNATVEEWLDGCNIASNLAWKNEHTQSGVRSVAKDAVRSDTGLNSQHSILACHEVSSSIQSCIERRKNGEKATQ
PHFTLKSITYDRRTLTVCPEKEQVSLTVLDDHSRVRAYLTLPSNEDGYQYQYLDDEDWEYTESTLHYRDGEWYLHLGYRKEKPELDQRVGSTTQNGTVLG
VDLGVNQIAVTSTARFFSAGKLNHARREFERTRGNLQECGTQSAHRTLQEVSSREDEFVKHILHSVANGIVQEAIEYDCDGIIFEKLDGIRKELPEADWH
SMWAFRKLKKFVEYKAEERGLFVDTVNPKNTSKRCNECECVRDGNRHGDEFECRRCGKQNHADYNAAKNVAELYLLRGHQPSRGRSLSQYALKSGSRTPS
PHFTLKSITYDRRTLTVCPEKEQVSLTVLDDHSRVRAYLTLPSNEDGYQYQYLDDEDWEYTESTLHYRDGEWYLHLGYRKEKPELDQRVGSTTQNGTVLG
VDLGVNQIAVTSTARFFSAGKLNHARREFERTRGNLQECGTQSAHRTLQEVSSREDEFVKHILHSVANGIVQEAIEYDCDGIIFEKLDGIRKELPEADWH
SMWAFRKLKKFVEYKAEERGLFVDTVNPKNTSKRCNECECVRDGNRHGDEFECRRCGKQNHADYNAAKNVAELYLLRGHQPSRGRSLSQYALKSGSRTPS
Blast result :
Comments
ISHwa27 is 59% (TnpB) aa similar to ISNph21.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169