ISHwa27

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM180088 ND Haloquadratum walsbyi
Haloquadratum walsbyi DSM 16790
DNA section
IS Length : 1488 bp

Ends


Left end : CGCTTCAACACTTGCGAGGTGGAGTCCCCTTCCTCAAGGAGCGAACGGAGTGAGCGAGTAGGGAGGGGAGGAAACCGTCTACGAATATCAACTAAAATCA II struct. : Yes
Right end : AAACGAGGATTCGGGTTAGAGGAAGAGACCACGGACAAGCCCCACCCTCTATCGACCGAATCGGTTTATCCGATGAGGGAAGTAGGGTGGGGTAGTTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGATAACATATTATCTACCTGTAATGac

DNA sequence

CGCTTCAACACTTGCGAGGTGGAGTCCCCTTCCTCAAGGAGCGAACGGAGTGAGCGAGTAGGGAGGGGAGGAAACCGTCTACGAATATCAACTAAAATCA
TACAATACAAAACAACCGAACTTTCAATAATTACTATTATTTCTATGAAACTACGATGGCATCAGATACTGAGTACTACCGTCGAACCGCAATCACGCGA
CTCGACGGACTCTCCCATCAAGACCACGACCTCCTCAACGCTACGGTGGAAGAGTGGCTTGACGGATGCAACATCGCATCCAACCTAGCGTGGAAGAACG
AACATACTCAGTCTGGTGTCAGAAGTGTTGCTAAAGACGCAGTACGGAGTGATACAGGATTGAACAGTCAGCACTCGATTCTCGCCTGTCACGAGGTTTC
CAGCAGCATCCAATCCTGCATCGAACGCCGAAAGAACGGTGAAAAGGCAACACAACCACACTTCACTTTGAAGTCAATAACGTACGATAGACGAACGCTC
ACCGTGTGCCCAGAAAAAGAACAGGTGTCGCTTACCGTACTTGATGACCACTCTCGTGTGAGAGCATACCTCACACTTCCAAGCAATGAAGACGGCTATC
AGTATCAATACCTAGACGATGAAGACTGGGAATACACAGAGAGTACCCTGCACTATCGAGACGGTGAGTGGTACTTGCATCTCGGCTATCGCAAGGAGAA
GCCTGAGTTGGACCAGCGGGTTGGGTCAACGACACAGAACGGAACGGTTCTGGGTGTTGACCTTGGTGTCAACCAGATAGCTGTGACTAGTACGGCTCGC
TTCTTTAGTGCAGGCAAACTCAACCACGCTCGGAGAGAGTTTGAGAGAACTCGTGGCAACCTACAGGAATGTGGAACGCAGTCAGCACACCGCACTTTGC
AGGAGGTGAGTAGTCGGGAAGATGAATTCGTGAAGCACATCCTACACTCTGTGGCGAACGGAATTGTTCAGGAAGCTATTGAATACGACTGTGACGGAAT
TATCTTCGAGAAGCTGGACGGTATTCGAAAAGAGCTTCCAGAAGCTGACTGGCATTCGATGTGGGCATTCCGTAAACTCAAGAAATTTGTTGAGTACAAA
GCGGAGGAGCGTGGATTGTTTGTGGATACAGTCAATCCGAAGAACACGTCGAAGCGATGCAACGAGTGCGAATGTGTTCGGGACGGTAATCGTCACGGTG
ACGAGTTTGAGTGTCGTCGCTGCGGGAAGCAGAATCACGCCGACTACAACGCAGCGAAGAACGTGGCGGAGTTGTATCTCCTACGAGGCCATCAGCCGTC
TCGTGGGAGGAGCCTCAGTCAATATGCCCTGAAGTCAGGGTCAAGGACTCCGAGTTAGAGCATACAGCTCTCACCCAGCCTTGCTGTGAAACGAGGATTC
GGGTTAGAGGAAGAGACCACGGACAAGCCCCACCCTCTATCGACCGAATCGGTTTATCCGATGAGGGAAGTAGGGTGGGGTAGTTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1203 bp400 aa1561358+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MASDTEYYRRTAITRLDGLSHQDHDLLNATVEEWLDGCNIASNLAWKNEHTQSGVRSVAKDAVRSDTGLNSQHSILACHEVSSSIQSCIERRKNGEKATQ
PHFTLKSITYDRRTLTVCPEKEQVSLTVLDDHSRVRAYLTLPSNEDGYQYQYLDDEDWEYTESTLHYRDGEWYLHLGYRKEKPELDQRVGSTTQNGTVLG
VDLGVNQIAVTSTARFFSAGKLNHARREFERTRGNLQECGTQSAHRTLQEVSSREDEFVKHILHSVANGIVQEAIEYDCDGIIFEKLDGIRKELPEADWH
SMWAFRKLKKFVEYKAEERGLFVDTVNPKNTSKRCNECECVRDGNRHGDEFECRRCGKQNHADYNAAKNVAELYLLRGHQPSRGRSLSQYALKSGSRTPS

 

Blast result :
Comments
ISHwa27 is 59% (TnpB) aa similar to ISNph21.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169